##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546712_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1755099 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46854735829717 31.0 31.0 33.0 30.0 34.0 2 31.852237395155488 31.0 31.0 34.0 30.0 34.0 3 31.98165915426993 31.0 31.0 34.0 30.0 34.0 4 35.6805456558291 37.0 35.0 37.0 33.0 37.0 5 35.61837651323373 37.0 35.0 37.0 33.0 37.0 6 35.65241675825694 37.0 35.0 37.0 33.0 37.0 7 35.992169102711586 37.0 35.0 37.0 35.0 37.0 8 18.645925956313576 32.0 0.0 37.0 0.0 37.0 9 28.01013162220479 31.0 17.0 39.0 17.0 39.0 10 33.59385481958567 32.0 32.0 39.0 27.0 39.0 11 35.73737492870772 37.0 35.0 39.0 32.0 39.0 12 36.40828010271785 37.0 35.0 39.0 32.0 39.0 13 36.61003225459077 39.0 35.0 39.0 33.0 39.0 14 37.68095702863485 39.0 36.0 41.0 33.0 41.0 15 37.919269511292526 40.0 36.0 41.0 33.0 41.0 16 37.99959774348911 40.0 36.0 41.0 33.0 41.0 17 37.958524846746535 40.0 36.0 41.0 33.0 41.0 18 37.95301119765894 40.0 36.0 41.0 33.0 41.0 19 37.952052847161326 40.0 36.0 41.0 33.0 41.0 20 37.86613575644451 40.0 36.0 41.0 33.0 41.0 21 37.712320501578546 40.0 36.0 41.0 33.0 41.0 22 37.720022631202 40.0 36.0 41.0 33.0 41.0 23 37.57437557653443 39.0 36.0 41.0 33.0 41.0 24 37.43159388729639 39.0 35.0 41.0 32.0 41.0 25 37.263825573372216 39.0 35.0 41.0 32.0 41.0 26 37.242841002131506 39.0 35.0 41.0 32.0 41.0 27 37.0994593467377 39.0 35.0 41.0 32.0 41.0 28 37.109129456514985 39.0 35.0 41.0 32.0 41.0 29 37.00155660734808 39.0 35.0 41.0 32.0 41.0 30 36.87288295418093 39.0 35.0 40.0 31.0 41.0 31 36.879491698189106 39.0 35.0 41.0 31.0 41.0 32 36.701847588084775 39.0 35.0 41.0 31.0 41.0 33 36.63139002415248 39.0 35.0 41.0 31.0 41.0 34 36.49267933033977 39.0 35.0 41.0 30.0 41.0 35 36.31909539006062 39.0 35.0 41.0 30.0 41.0 36 36.178115308595125 39.0 35.0 41.0 30.0 41.0 37 36.11275774187097 39.0 35.0 40.0 30.0 41.0 38 36.002294457463655 38.0 35.0 40.0 30.0 41.0 39 35.93010080912815 38.0 35.0 40.0 29.0 41.0 40 35.83180777836464 38.0 35.0 40.0 29.0 41.0 41 35.79492324934377 38.0 35.0 40.0 29.0 41.0 42 35.62746488944498 38.0 35.0 40.0 28.0 41.0 43 35.610318278342135 38.0 35.0 40.0 28.0 41.0 44 35.33942244853424 38.0 34.0 40.0 27.0 41.0 45 35.21640830517253 37.0 34.0 40.0 27.0 41.0 46 35.193264881354274 37.0 34.0 40.0 27.0 41.0 47 35.042379375750315 37.0 34.0 40.0 27.0 41.0 48 35.00326078471927 37.0 34.0 40.0 27.0 41.0 49 34.959774348911374 37.0 34.0 40.0 27.0 41.0 50 34.355454592589936 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 1.0 11 3.0 12 4.0 13 9.0 14 19.0 15 29.0 16 80.0 17 225.0 18 472.0 19 1099.0 20 1965.0 21 3431.0 22 5112.0 23 7699.0 24 11022.0 25 15744.0 26 21099.0 27 25353.0 28 29044.0 29 34470.0 30 42315.0 31 53895.0 32 70158.0 33 92881.0 34 138923.0 35 199871.0 36 200470.0 37 284838.0 38 286100.0 39 228766.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.191175540525066 24.89403731641349 28.65513569320021 14.259651449861233 2 30.934038478741083 25.681742169530036 29.273334438684085 14.11088491304479 3 28.57850183949737 25.624366488727983 31.519532516399362 14.277599155375281 4 25.712851525754388 28.228721000923596 30.442328324499073 15.616099148822943 5 23.438962702388867 30.86378603144324 29.88731689779323 15.809934368374662 6 21.65553054272152 39.722944403706 27.133227242451852 11.488297811120626 7 85.79288119929417 4.410406478494945 7.637688814135271 2.1590235080756126 8 44.46535494578938 49.936556285428914 3.7301599510910783 1.867928817690626 9 80.1698935501644 5.1972566789679675 10.220620033399825 4.412229737467801 10 46.15044507460833 23.771365603877616 15.54163041515037 14.536558906363686 11 36.66750422625732 23.408138230379027 23.38272655844485 16.541630984918797 12 30.8919895686796 21.019270138037797 28.118527786751628 19.97021250653097 13 23.628638612408757 27.543517488187273 29.94395187963756 18.883892019766407 14 20.130602319299367 28.854326735984692 31.69849677995372 19.316574164762216 15 19.174644849093983 21.52841520620774 39.447290437747384 19.84964950695089 16 22.856089599504074 19.853979747011422 36.06121364093992 21.228717012544593 17 23.070721366714924 21.27224732052152 28.237552411573365 27.419478901190192 18 25.572346631158698 21.20729371961354 30.66294266021461 22.557416989013156 19 28.42249924363241 24.307574672425886 25.668010750390717 21.601915333550988 20 30.010899670047102 23.31065085217415 24.79649296136571 21.881956516413034 21 26.083030074086988 26.02257764376824 26.935232713368308 20.95915956877646 22 25.91922165074449 22.161655838217673 26.26592573980157 25.653196771236264 23 23.63353862089831 26.839283709921773 25.51235001558317 24.014827653596747 24 23.39583123231225 23.574225727437597 31.425862586668902 21.60408045358125 25 23.786521444089477 23.759001628967937 29.071237576911617 23.38323935003097 26 21.990668332669554 26.356461943172437 27.24814953458466 24.40472018957335 27 22.908337364444968 24.92548853369525 28.082746329409336 24.083427772450445 28 21.484030245587284 24.9172838683174 30.84823135333107 22.75045453276425 29 22.619236863561543 23.709773636700834 29.78424578898398 23.88674371075364 30 24.718605617119035 23.977963636239323 28.55747738446663 22.745953362175012 31 28.727610237371227 23.291734540330776 25.30250430317606 22.678150919121943 32 28.499190074178156 23.013003824855463 25.608697856930007 22.879108244036374 33 27.463920838653543 22.945543242859802 25.365919529325698 24.224616389160953 34 22.82486628959392 24.062118433205193 28.67308339871426 24.439931878486625 35 23.501010484308864 24.815523226894893 29.51417555362974 22.169290735166506 36 27.00480143855133 24.538159955649224 25.521124449390037 22.93591415640941 37 23.409733581980277 26.18433490076628 27.50671044767275 22.89922106958069 38 23.50391630329685 27.74014457304118 25.5133755987554 23.242563524906572 39 23.284669411810956 25.967651967210966 25.61975136445295 25.12792725652513 40 25.69889219924346 23.268601942112667 26.267065276659608 24.76544058198426 41 21.303926445174888 23.448420858310556 26.51952966755721 28.72812302895734 42 24.18296631699978 24.071006820697864 25.567560576354953 26.178466285947405 43 23.616673475399395 22.749314995906214 27.417712619060236 26.216298909634155 44 23.232820484770375 24.674163679655678 27.980074058500403 24.112941777073544 45 22.273729288205395 25.951698451198478 26.52420176867516 25.25037049192097 46 23.876146017973916 25.068671339907322 27.045881742283484 24.009300899835278 47 23.173849452367072 24.2916211564134 28.16536275161686 24.369166639602664 48 24.495484300315823 23.351104410634385 28.466599320038355 23.686811969011433 49 24.27663624673024 21.994428804301066 29.20359478297236 24.525340165996333 50 22.301192126484032 25.402954477211825 28.079042834620726 24.216810561683417 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 653.0 1 1271.5 2 1890.0 3 10042.0 4 18194.0 5 12193.0 6 6192.0 7 6307.0 8 6422.0 9 6763.0 10 7104.0 11 7227.5 12 7351.0 13 7328.0 14 7305.0 15 6899.5 16 6494.0 17 6470.5 18 6447.0 19 6318.0 20 6189.0 21 6580.5 22 6972.0 23 7466.5 24 7961.0 25 8920.0 26 9879.0 27 11496.0 28 13113.0 29 15935.5 30 18758.0 31 21497.0 32 24236.0 33 26785.0 34 29334.0 35 33755.0 36 38176.0 37 44335.5 38 50495.0 39 61476.5 40 72458.0 41 84186.5 42 95915.0 43 104820.0 44 113725.0 45 124334.5 46 134944.0 47 141754.0 48 148564.0 49 145714.0 50 142864.0 51 131660.5 52 120457.0 53 114305.0 54 108153.0 55 103490.0 56 98827.0 57 95990.0 58 93153.0 59 88757.5 60 84362.0 61 79082.5 62 73803.0 63 65809.0 64 57815.0 65 50688.0 66 43561.0 67 37984.0 68 32407.0 69 27632.0 70 22857.0 71 19040.0 72 15223.0 73 12692.0 74 10161.0 75 8394.5 76 6628.0 77 4982.5 78 3337.0 79 2416.5 80 1496.0 81 1095.0 82 694.0 83 502.0 84 310.0 85 235.0 86 160.0 87 101.5 88 43.0 89 26.5 90 10.0 91 6.0 92 2.0 93 3.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1755099.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.382093410742304 #Duplication Level Percentage of deduplicated Percentage of total 1 74.28100514762974 21.82531431891487 2 6.637465083559162 3.9004523819135155 3 2.7407954866960775 2.4159092702953524 4 1.7812991555886764 2.093531927279315 5 1.418009748585983 2.0832047445148283 6 1.1509377921787645 2.029017703184998 7 0.9531155997396715 1.9603172107950688 8 0.8391802401475936 1.9725497763572601 9 0.7889593656141195 2.0863149999978643 >10 9.239889214526533 54.43704371907041 >50 0.1440370033635489 2.713135483597922 >100 0.02291503999846108 1.30360718707918 >500 0.001793341778765753 0.3617022379046281 >1k 1.9926019764063922E-4 0.12845171737823796 >5k 3.9852039528127844E-4 0.6894473217165589 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6086 0.3467610658999863 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5690 0.32419823611089743 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2194 0.12500719332641633 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05031055228223593 0.0 2 0.0 0.0 0.0 0.16608749705857048 0.0 3 0.0 0.0 0.0 0.26266324577701883 0.0 4 0.0 0.0 0.0 0.4231670122312189 0.0 5 0.0 0.0 0.0 0.70195470454943 0.0 6 0.0 0.0 0.0 1.206028833701119 0.0 7 0.0 0.0 0.0 1.4734211574389822 0.0 8 0.0 0.0 0.0 2.194178220145986 0.0 9 0.0 0.0 0.0 2.892942221492919 0.0 10 0.0 0.0 0.0 3.855509005474905 0.0 11 0.0 0.0 0.0 4.488293822741623 0.0 12 0.0 0.0 0.0 5.032308718767431 0.0 13 0.0 0.0 0.0 5.314913859560059 0.0 14 0.0 0.0 0.0 5.457868758400523 0.0 15 0.0 0.0 0.0 5.591479455005103 0.0 16 0.0 0.0 0.0 5.82593916354576 0.0 17 0.0 0.0 0.0 6.07390238385413 0.0 18 0.0 0.0 0.0 6.439579761597494 0.0 19 0.0 0.0 0.0 6.610282382931105 0.0 20 0.0 0.0 0.0 6.814601341576743 0.0 21 0.0 0.0 0.0 7.029176131944694 0.0 22 0.0 0.0 0.0 7.244320690741662 0.0 23 0.0 0.0 0.0 7.479976912983256 0.0 24 0.0 0.0 0.0 7.675350507293321 0.0 25 0.0 0.0 0.0 7.844913591768897 0.0 26 0.0 0.0 0.0 8.00649991823823 0.0 27 0.0 0.0 0.0 8.183526969133935 0.0 28 0.0 0.0 0.0 8.347506323005142 0.0 29 0.0 0.0 0.0 8.530857803462938 0.0 30 0.0 0.0 0.0 8.764975650946186 0.0 31 0.0 0.0 0.0 8.956816680996342 0.0 32 0.0 0.0 0.0 9.169739142920143 0.0 33 0.0 0.0 0.0 9.370582514148774 0.0 34 0.0 0.0 0.0 9.580884041299095 0.0 35 0.0 0.0 0.0 9.80280884440137 0.0 36 0.0 0.0 0.0 9.99311149969318 0.0 37 0.0 0.0 0.0 10.195721153051766 0.0 38 0.0 0.0 0.0 10.443741350203037 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATATCG 25 4.443802E-5 44.0 1 CGTAAGA 115 0.0 44.0 2 TGATTCG 160 0.0 42.625004 15 ATTGCGA 150 0.0 42.533333 2 AGCGATA 385 0.0 40.571426 8 CGTTAGG 120 0.0 40.333332 2 CGTTTTT 6250 0.0 40.268803 1 TATAGCG 55 7.8216544E-11 40.0 1 CGCATCG 45 2.3521352E-8 39.11111 21 GAGCGAT 1925 0.0 39.085712 7 TATGCGA 130 0.0 38.923077 2 CTATCTC 860 0.0 38.883724 6 GTTTTTA 3475 0.0 38.04892 2 CCGTTTA 35 7.2924013E-6 37.714287 13 TCGTAAG 65 1.0913936E-11 37.230766 1 TATCACG 60 1.9826984E-10 36.666664 1 ATTACCG 30 1.3013753E-4 36.666664 1 ATTCGGC 190 0.0 35.894737 17 GCGTTAG 190 0.0 35.894737 1 AACCGTT 405 0.0 35.851852 44 >>END_MODULE