##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546711_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2255356 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43831262115604 31.0 31.0 33.0 30.0 34.0 2 31.81615274927772 31.0 31.0 34.0 30.0 34.0 3 31.91854722713399 31.0 31.0 34.0 30.0 34.0 4 35.63849254840478 37.0 35.0 37.0 33.0 37.0 5 35.587542720528376 37.0 35.0 37.0 33.0 37.0 6 35.61093104591914 37.0 35.0 37.0 33.0 37.0 7 35.97467849864944 37.0 35.0 37.0 35.0 37.0 8 18.410413699655397 30.0 0.0 37.0 0.0 37.0 9 27.856349064183217 28.0 17.0 39.0 17.0 39.0 10 33.46215675041989 32.0 32.0 39.0 27.0 39.0 11 35.6807178112901 37.0 34.0 39.0 32.0 39.0 12 36.46682829673009 37.0 35.0 39.0 32.0 39.0 13 36.72306278920046 39.0 35.0 39.0 33.0 39.0 14 37.8405577656033 40.0 37.0 41.0 33.0 41.0 15 38.03903951305249 40.0 37.0 41.0 33.0 41.0 16 38.09281239857477 40.0 37.0 41.0 33.0 41.0 17 38.03841034408759 40.0 37.0 41.0 33.0 41.0 18 37.99241228435777 40.0 37.0 41.0 33.0 41.0 19 37.981759864074675 40.0 37.0 41.0 33.0 41.0 20 37.87399638904014 40.0 36.0 41.0 33.0 41.0 21 37.730438564909484 40.0 36.0 41.0 33.0 41.0 22 37.72280251986826 40.0 36.0 41.0 33.0 41.0 23 37.5454970301806 39.0 36.0 41.0 33.0 41.0 24 37.34244793283189 39.0 35.0 41.0 32.0 41.0 25 37.180973203343505 39.0 35.0 41.0 32.0 41.0 26 37.146321467653 39.0 35.0 41.0 32.0 41.0 27 37.015383380716834 39.0 35.0 41.0 32.0 41.0 28 36.97520391459264 39.0 35.0 41.0 32.0 41.0 29 36.84611475970978 39.0 35.0 40.0 31.0 41.0 30 36.68762625501251 38.0 35.0 40.0 31.0 41.0 31 36.66274237858679 39.0 35.0 40.0 31.0 41.0 32 36.40705547150871 39.0 35.0 41.0 30.0 41.0 33 36.22301268624554 39.0 35.0 41.0 30.0 41.0 34 35.97893325931693 39.0 35.0 41.0 29.0 41.0 35 35.74562109041766 39.0 35.0 41.0 27.0 41.0 36 35.57576098850913 38.0 35.0 40.0 26.0 41.0 37 35.53474130026479 38.0 35.0 40.0 26.0 41.0 38 35.425090318335556 38.0 35.0 40.0 26.0 41.0 39 35.358429888673896 38.0 35.0 40.0 25.0 41.0 40 35.265944267778565 38.0 35.0 40.0 25.0 41.0 41 35.224463454993355 38.0 35.0 40.0 25.0 41.0 42 35.048393247008455 38.0 34.0 40.0 24.0 41.0 43 35.030649263353546 38.0 34.0 40.0 24.0 41.0 44 34.7585503131213 38.0 34.0 40.0 23.0 41.0 45 34.63026058857227 38.0 34.0 40.0 23.0 41.0 46 34.626072336252015 37.0 34.0 40.0 23.0 41.0 47 34.490235244458084 37.0 34.0 40.0 23.0 41.0 48 34.450652136514144 37.0 34.0 40.0 23.0 41.0 49 34.40455076715162 37.0 33.0 40.0 23.0 41.0 50 33.77273432664289 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 5.0 12 3.0 13 9.0 14 23.0 15 43.0 16 123.0 17 314.0 18 777.0 19 1645.0 20 3187.0 21 5318.0 22 8389.0 23 12665.0 24 18754.0 25 27784.0 26 37747.0 27 43581.0 28 45332.0 29 49126.0 30 57162.0 31 70081.0 32 89003.0 33 116853.0 34 169221.0 35 235485.0 36 252251.0 37 356648.0 38 356165.0 39 297657.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.33866405126286 23.70100330058758 26.827427687690992 17.13290496045857 2 34.09217879572006 24.846897784651294 27.252061315375485 13.808862104253164 3 28.48725434033474 24.787794033403152 33.29549747356958 13.429454152692525 4 24.924801228719545 27.297774719379113 32.74791208128561 15.029511970615724 5 23.11147331064364 29.976154540569205 32.106860291679006 14.805511857108147 6 20.9229052974342 38.43366634801779 29.54438235028084 11.099046004267175 7 82.49429358380672 4.073325896222149 10.997731621970102 2.434648898001025 8 42.01154939619288 50.54798444236741 5.416572815998894 2.0238933454408086 9 75.85742561263056 5.2933106791123 14.271183795374212 4.578079912882933 10 40.07908285875932 24.494492222070484 20.466037290786907 14.960387628383279 11 32.15851510803616 24.122134155317386 27.38192994808802 16.337420788558436 12 27.901493156734457 21.119770005267462 31.102185198256947 19.876551639741134 13 23.525509941667746 25.051300105171865 32.9313421029762 18.491847850184186 14 20.12990410383106 26.537140921433245 33.78193952529002 19.551015449445675 15 19.55465123909485 21.84976562458432 39.51349587382214 19.082087262498693 16 22.273867185490897 20.857328067054603 36.665830139454705 20.202974607999803 17 21.709033961822435 22.657265637885992 32.33502826161369 23.298672138677883 18 23.836414295570187 21.71697062459319 33.51564010293719 20.93097497689943 19 26.264146325458153 25.94849770945252 28.072596964736384 19.714759000352938 20 28.104875682597335 24.061655898226267 27.5170305707835 20.316437848392894 21 25.06721776961154 26.66262000322787 28.73666064248837 19.53350158467222 22 23.736474419116096 23.175055290606007 29.008103377027837 24.08036691325006 23 22.791302127025624 26.195288016614672 28.60116096970944 22.412248886650268 24 22.542915619529687 23.566700778058987 33.14886873735233 20.741514865058996 25 22.99849779813032 24.739819345593332 29.9896779045082 22.272004951768146 26 21.041556188912082 25.84687295486832 30.07746892286628 23.034101933353316 27 21.851361824918104 24.284946589363276 30.254469804323573 23.609221781395043 28 21.4866743875468 25.617108784599857 31.28228980258549 21.613927025267852 29 22.791036093636656 24.10790136900782 30.144731031375976 22.956331505979545 30 24.117788943297644 24.09974301174626 29.821101413701427 21.961366631254666 31 25.78147308008137 24.514267370650135 27.174645599187002 22.529613950081494 32 27.1935783087016 23.543289839830166 26.403281787886257 22.85985006358198 33 26.235725091737176 25.392487926518033 25.33076818027841 23.041018801466375 34 23.340749753032338 26.009241999932602 28.225699180085094 22.424309066949963 35 23.864835529291163 26.31079084632315 27.796542984788207 22.02783063959747 36 25.78768052582386 27.69611538045435 25.490255196962252 21.025948896759537 37 23.660388869872428 27.560305335388293 25.94854204835068 22.830763746388598 38 23.395774325649697 27.45229577946896 26.981594036595553 22.170335858285785 39 22.805712268927834 25.788522964888916 25.720817467397612 25.684947298785648 40 24.360544410727176 23.518593073554687 28.508492672553693 23.612369843164448 41 20.776187883420622 23.655334235482115 28.274161595774682 27.294316285322584 42 23.38703956271205 25.18835163938642 26.88240792141019 24.54220087649134 43 22.434063624545306 23.932319332291666 28.810307552333203 24.82330949082983 44 23.60966517037665 25.551176843034977 27.809401265254795 23.029756721333573 45 21.65112736082463 26.09202272279853 27.871032333698093 24.385817582678744 46 23.394665853195683 25.969470008282507 27.411237959772205 23.22462617874961 47 22.51130198514115 24.949453656096864 28.543919452184046 23.99532490657794 48 23.156920681258303 23.810919429127818 29.11407334363178 23.9180865459821 49 23.654092746333617 23.10114234737221 28.550038220130215 24.69472668616396 50 21.85974187667047 24.80415508682443 29.543938961299236 23.792164075205864 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 901.0 1 1642.5 2 2384.0 3 21540.0 4 40696.0 5 27907.0 6 15118.0 7 15223.0 8 15328.0 9 15727.0 10 16126.0 11 16096.0 12 16066.0 13 15759.0 14 15452.0 15 14828.5 16 14205.0 17 13515.0 18 12825.0 19 12351.5 20 11878.0 21 11944.5 22 12011.0 23 12676.0 24 13341.0 25 14589.0 26 15837.0 27 18320.0 28 20803.0 29 23628.5 30 26454.0 31 30205.5 32 33957.0 33 39186.0 34 44415.0 35 50721.5 36 57028.0 37 62879.0 38 68730.0 39 78506.0 40 88282.0 41 99527.5 42 110773.0 43 118041.5 44 125310.0 45 136607.5 46 147905.0 47 163727.0 48 179549.0 49 191582.0 50 203615.0 51 193080.0 52 182545.0 53 164177.0 54 145809.0 55 133340.5 56 120872.0 57 114952.5 58 109033.0 59 102715.0 60 96397.0 61 89847.5 62 83298.0 63 74185.0 64 65072.0 65 56095.5 66 47119.0 67 40265.5 68 33412.0 69 28410.0 70 23408.0 71 19844.0 72 16280.0 73 13343.0 74 10406.0 75 8313.0 76 6220.0 77 4858.5 78 3497.0 79 2580.5 80 1664.0 81 1196.5 82 729.0 83 556.5 84 384.0 85 271.0 86 158.0 87 99.5 88 41.0 89 30.0 90 19.0 91 10.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2255356.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.26146298734361 #Duplication Level Percentage of deduplicated Percentage of total 1 75.71337328488312 28.21191056301603 2 6.866634346473154 5.117216830974637 3 3.106768674712721 3.472882379491398 4 2.0524679306377065 3.0591183132066653 5 1.5931589010120861 2.968171571150944 6 1.2660757454225742 2.830550071634204 7 1.11943394339369 2.9198222513978065 8 0.9102345163041546 2.7133335791255897 9 0.8354429909890465 2.8016845278096607 >10 6.4490398978884516 40.6820944728548 >50 0.06370159366081109 1.5562020670458638 >100 0.020466347157992212 1.4465958841708564 >500 0.002366568125955267 0.5690837794276856 >1k 5.56839559048298E-4 0.29966247322520645 >5k 0.0 0.0 >10k+ 2.78419779524149E-4 1.3516712354686566 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13702 0.6075315825971598 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12356 0.5478514256729314 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04832939899510321 0.0 2 0.0 0.0 0.0 0.1358100450660561 0.0 3 0.0 0.0 0.0 0.2327348764452264 0.0 4 0.0 0.0 0.0 0.38725593653507473 0.0 5 0.0 0.0 0.0 0.6453526627281901 0.0 6 0.0 0.0 0.0 1.274743322118548 0.0 7 0.0 0.0 0.0 1.6613341751812132 0.0 8 0.0 0.0 0.0 2.646721847903391 0.0 9 0.0 0.0 0.0 3.789911659179305 0.0 10 0.0 0.0 0.0 5.205785694143186 0.0 11 0.0 0.0 0.0 5.9489499662137595 0.0 12 0.0 0.0 0.0 6.587829149810496 0.0 13 0.0 0.0 0.0 6.963290939434839 0.0 14 0.0 0.0 0.0 7.163968792509919 0.0 15 0.0 0.0 0.0 7.314543690663469 0.0 16 0.0 0.0 0.0 7.544884266608021 0.0 17 0.0 0.0 0.0 7.772741864255576 0.0 18 0.0 0.0 0.0 8.132108633847606 0.0 19 0.0 0.0 0.0 8.30432091430355 0.0 20 0.0 0.0 0.0 8.508944929314929 0.0 21 0.0 0.0 0.0 8.710021832473455 0.0 22 0.0 0.0 0.0 8.919523126282503 0.0 23 0.0 0.0 0.0 9.158022059488612 0.0 24 0.0 0.0 0.0 9.358877268156336 0.0 25 0.0 0.0 0.0 9.529315992685856 0.0 26 0.0 0.0 0.0 9.693015204694957 0.0 27 0.0 0.0 0.0 9.872410386652927 0.0 28 0.0 0.0 0.0 10.042583077793484 0.0 29 0.0 0.0 0.0 10.229515872438764 0.0 30 0.0 0.0 0.0 10.480562713824336 0.0 31 0.0 0.0 0.0 10.67804816623185 0.0 32 0.0 0.0 0.0 10.902669024313678 0.0 33 0.0 0.0 0.0 11.111283540159514 0.0 34 0.0 0.0 0.0 11.315419827291123 0.0 35 0.0 0.0 0.0 11.54332176383684 0.0 36 0.0 0.0 0.0 11.738235560151036 0.0 37 0.0 0.0 0.0 11.946451025913426 0.0 38 0.0 0.0 0.0 12.195458277983608 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGTAT 70 0.0 44.0 6 GTTAACG 35 1.4469151E-7 44.0 1 CGTTTTT 15395 0.0 42.227997 1 GTTTTTA 8370 0.0 40.556747 2 GAGCGAT 2350 0.0 40.53617 7 CTATCTC 1310 0.0 38.96183 6 ACGTAAG 110 0.0 38.0 1 ACGGGAT 250 0.0 37.84 5 ATGTCTC 2325 0.0 37.56559 8 AGCGATA 515 0.0 37.165047 8 TATACTA 1375 0.0 36.96 44 GTTGATC 1010 0.0 36.811882 16 TATTTTT 9630 0.0 36.483906 7 GATGTCT 2395 0.0 36.283924 7 TTATTTT 9715 0.0 36.255276 6 TATACGA 85 0.0 36.23529 2 CGTAAGA 195 0.0 36.102566 2 ATCGCAT 110 0.0 36.0 10 TACCGGT 55 3.428795E-9 36.0 40 GCCAGTA 1010 0.0 35.940594 25 >>END_MODULE