SRR1546704_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546704_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1448523
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9848	0.6798649382854122	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9264	0.6395480085576826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGCG	20	7.8571617E-4	44.0	1
GTCTACG	20	7.8571617E-4	44.0	1
TCGACAG	50	2.7284841E-11	44.0	1
CGTTTTT	16425	0.0	43.0758	1
GAGCGAT	1500	0.0	42.533333	7
GCGATCG	105	0.0	41.90476	9
GTTTTTA	8880	0.0	41.25	2
GAGACCG	410	0.0	40.780487	7
AGCGATA	350	0.0	40.22857	8
AGACCGA	380	0.0	39.947372	8
GTTAGCG	50	1.3478711E-9	39.6	1
CTAGACG	45	2.3515895E-8	39.11111	1
CGAGATC	125	0.0	38.72	6
CTACGCG	40	4.1255225E-7	38.5	1
TGCGACG	35	7.291521E-6	37.714287	1
GCTAGCG	35	7.291521E-6	37.714287	1
AGTGCGA	100	0.0	37.399998	2
GCGATGC	265	0.0	37.35849	9
AGCGATG	685	0.0	37.255474	8
CGTTGAG	155	0.0	36.903225	3