SRR1546703_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546703_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1670429
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10806	0.6468996886428576	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10127	0.6062514479813269	No Hit
TCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACGTGAGGGC	1786	0.10691864185787005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	13215	0.0	42.102158	1
GTTTTTA	7170	0.0	41.36123	2
CAATCGA	80	0.0	41.250004	2
CTATCTC	810	0.0	40.46914	6
TATCTCT	850	0.0	38.564705	7
CCGGTAT	40	4.1260319E-7	38.500004	42
TACGTAG	80	0.0	38.500004	1
GAGCGAT	1880	0.0	37.914894	7
TTATTTT	8130	0.0	37.23493	6
GACCGAT	1060	0.0	37.150944	9
TATTTTT	8200	0.0	36.943905	7
TTGATCC	1090	0.0	36.935783	17
GTTGATC	1085	0.0	36.90323	16
ATCGCTA	30	1.3013478E-4	36.666664	42
AATCGTT	145	0.0	36.41379	22
TTTTATT	8495	0.0	35.919952	4
ATGTCTC	1595	0.0	35.86207	8
CATATGC	1075	0.0	35.813953	33
TCGACAG	80	0.0	35.75	1
TTTATTT	8520	0.0	35.685448	5