##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546703_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1670429 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.520111300749686 31.0 31.0 33.0 30.0 34.0 2 31.904919035768657 31.0 31.0 34.0 30.0 34.0 3 32.010617631758066 33.0 31.0 34.0 30.0 34.0 4 35.72704616598491 37.0 35.0 37.0 35.0 37.0 5 35.68027075679361 37.0 35.0 37.0 33.0 37.0 6 35.70806780773083 37.0 35.0 37.0 33.0 37.0 7 36.00136731342667 37.0 35.0 37.0 35.0 37.0 8 18.19699789694743 25.0 0.0 37.0 0.0 37.0 9 27.764080364984085 25.0 17.0 39.0 17.0 39.0 10 33.575392908049366 32.0 32.0 39.0 27.0 39.0 11 35.79545194677535 37.0 35.0 39.0 32.0 39.0 12 36.57443566892098 37.0 35.0 39.0 33.0 39.0 13 36.828270462258494 39.0 35.0 39.0 33.0 39.0 14 37.95611905684109 40.0 37.0 41.0 33.0 41.0 15 38.159439281765344 40.0 37.0 41.0 33.0 41.0 16 38.21223230679065 40.0 37.0 41.0 33.0 41.0 17 38.158983710172656 40.0 37.0 41.0 33.0 41.0 18 38.11386595898419 40.0 37.0 41.0 33.0 41.0 19 38.08247761503183 40.0 37.0 41.0 34.0 41.0 20 37.9787892810769 40.0 36.0 41.0 33.0 41.0 21 37.84767386102612 40.0 36.0 41.0 33.0 41.0 22 37.837666252202276 40.0 36.0 41.0 33.0 41.0 23 37.662047294437535 39.0 36.0 41.0 33.0 41.0 24 37.450945236223745 39.0 35.0 41.0 33.0 41.0 25 37.287631500650434 39.0 35.0 41.0 32.0 41.0 26 37.27382786098661 39.0 35.0 41.0 33.0 41.0 27 37.15668968869674 39.0 35.0 41.0 32.0 41.0 28 37.11869645462333 39.0 35.0 41.0 32.0 41.0 29 36.9826032713752 39.0 35.0 41.0 32.0 41.0 30 36.8445291598745 39.0 35.0 40.0 31.0 41.0 31 36.80008369107576 39.0 35.0 41.0 31.0 41.0 32 36.515073074042654 39.0 35.0 41.0 30.0 41.0 33 36.27407689880863 39.0 35.0 41.0 30.0 41.0 34 36.000041905402746 39.0 35.0 41.0 29.0 41.0 35 35.73592651947494 39.0 35.0 41.0 27.0 41.0 36 35.56427779929587 39.0 35.0 41.0 26.0 41.0 37 35.472092498394126 39.0 35.0 41.0 25.0 41.0 38 35.33680689212172 38.0 35.0 40.0 25.0 41.0 39 35.22077621976151 38.0 35.0 40.0 24.0 41.0 40 35.09204282253241 38.0 35.0 40.0 24.0 41.0 41 35.01264106406199 38.0 34.0 40.0 24.0 41.0 42 34.83596309690505 38.0 34.0 40.0 23.0 41.0 43 34.81479009284441 38.0 34.0 40.0 23.0 41.0 44 34.547497080091404 38.0 34.0 40.0 23.0 41.0 45 34.420614704366365 37.0 34.0 40.0 23.0 41.0 46 34.419727507125415 37.0 34.0 40.0 23.0 41.0 47 34.2877703871281 37.0 33.0 40.0 23.0 41.0 48 34.23287490818227 37.0 33.0 40.0 23.0 41.0 49 34.17304955792793 37.0 33.0 40.0 23.0 41.0 50 33.56438435874856 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 2.0 12 3.0 13 9.0 14 17.0 15 31.0 16 82.0 17 212.0 18 506.0 19 1077.0 20 2073.0 21 3720.0 22 5982.0 23 9109.0 24 13618.0 25 20964.0 26 29319.0 27 34006.0 28 34507.0 29 35974.0 30 41135.0 31 50502.0 32 63611.0 33 83826.0 34 124707.0 35 175945.0 36 187444.0 37 265347.0 38 270541.0 39 216155.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.05444290059619 22.792468282099986 26.192253606708217 17.9608352105956 2 35.38462275259828 23.629079715450345 26.98097315120846 14.005324380742913 3 28.804516684037452 24.434621285909188 33.21667667407594 13.544185355977417 4 25.058772327348244 26.81161545926226 32.905199801967036 15.224412411422456 5 22.90118286978974 29.71721635579842 32.53912617656901 14.84247459784283 6 20.980299072872896 38.33033310604641 29.885017561356992 10.8043502597237 7 81.82891939735242 4.142887844978746 11.632520747664223 2.3956720100046156 8 41.371288453445196 51.16003134524125 5.703923962048073 1.764756239265482 9 76.32883528722262 4.843306719411601 14.392829626401364 4.435028366964414 10 41.75981140174171 24.04963036441537 19.733074557493914 14.457483676349009 11 33.48786449468969 23.656857010983405 27.051254498096 15.80402399623091 12 28.1313363213881 21.326198240092815 30.756051289818366 19.78641414870072 13 23.24378946965121 24.58422357370472 33.361968691874964 18.81001826476911 14 20.351658166854143 26.12149334093218 34.326511333316176 19.200337158897504 15 19.805091985352266 21.386063101155454 39.26697872223243 19.54186619125985 16 22.782051796275088 20.636076121762734 36.831257120176915 19.750614961785264 17 22.244944262821107 21.833732532181852 32.56187482377281 23.359448381224222 18 25.177663941418643 21.150494872873974 33.26253315764992 20.409308028057463 19 27.215044757963376 24.491313309335506 28.60151494017405 19.692126992527072 20 28.798410468209063 23.35615581386578 27.7395806705942 20.105853047330953 21 25.427300412049842 26.155975500904262 29.400351646193883 19.01637244085202 22 24.912642201494346 21.983155225394196 29.755110812851072 23.349091760260386 23 23.188953256917834 26.062466587924423 28.561525212984208 22.187054942173535 24 22.698360720509523 22.894118816184346 33.265346806119865 21.142173657186266 25 23.404167432438015 23.45038310517837 30.802326827419783 22.343122634963834 26 21.376065669357992 25.20825488542165 30.677748051548438 22.737931393671925 27 22.97918678375435 23.100892046294693 30.783170071879738 23.136751098071215 28 21.62779741012638 25.281888664528694 31.921799729291102 21.168514196053827 29 22.773311526559944 24.11009387408863 31.01586478683021 22.100729812521212 30 24.17456832945309 23.581307556322358 31.24442882636736 20.999695287857193 31 26.41477129527804 23.16093650194052 28.76261128129361 21.661680921487832 32 26.864176807275257 24.10368833395493 28.715377905915183 20.316756952854625 33 25.255069206772628 24.45210182533948 28.441196842248306 21.85163212563958 34 22.79025328224067 25.947526054684154 31.035141272092382 20.227079390982798 35 22.36964276841458 27.156915977871556 29.90974174897586 20.563699504738004 36 26.29288643815451 27.235877729613172 26.137477258835908 20.333758573396416 37 24.550579521787515 28.45173305779533 26.094434423731865 20.903252996685282 38 24.695572215281224 27.952699575977192 25.418320682890442 21.93340752585114 39 24.77106180508121 25.91879092137409 25.171976779617687 24.138170493927007 40 26.178604418385937 23.3642974349703 27.51861946841201 22.93847867823176 41 22.469676951250246 23.897034833566707 27.61584000277773 26.017448212405313 42 24.641574110602726 24.698924647500732 26.348441029220638 24.311060212675905 43 23.743541329802103 23.541736883159956 28.52195453982181 24.192767247216135 44 24.081957389389196 24.78878180395575 28.262200907671026 22.86705989898403 45 22.585814781711765 25.372105010150086 28.218619288817425 23.823460919320723 46 23.93343266909279 25.102174351618658 27.55998608740629 23.404406891882264 47 23.05335934661096 25.257463801215135 28.46382575972999 23.225351092443915 48 23.503842426107305 23.842916999166082 29.147362743343173 23.505877831383433 49 24.786267479791118 22.82024557763305 28.74806412005539 23.64542282252044 50 21.867556178682243 24.969154630337474 29.342821514712686 23.820467676267594 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 796.0 1 1464.5 2 2133.0 3 18183.5 4 34234.0 5 23552.5 6 12871.0 7 12854.0 8 12837.0 9 13223.0 10 13609.0 11 13352.5 12 13096.0 13 12712.0 14 12328.0 15 11817.5 16 11307.0 17 10751.0 18 10195.0 19 9660.5 20 9126.0 21 9307.5 22 9489.0 23 9774.5 24 10060.0 25 10637.0 26 11214.0 27 12639.5 28 14065.0 29 15884.5 30 17704.0 31 20351.5 32 22999.0 33 26472.5 34 29946.0 35 34009.5 36 38073.0 37 41996.5 38 45920.0 39 54477.5 40 63035.0 41 75068.0 42 87101.0 43 99280.0 44 111459.0 45 121717.5 46 131976.0 47 131830.0 48 131684.0 49 123874.0 50 116064.0 51 108162.0 52 100260.0 53 96787.0 54 93314.0 55 91048.5 56 88783.0 57 87612.0 58 86441.0 59 82634.5 60 78828.0 61 74037.5 62 69247.0 63 61850.0 64 54453.0 65 47008.0 66 39563.0 67 34342.0 68 29121.0 69 25189.0 70 21257.0 71 18209.0 72 15161.0 73 12298.0 74 9435.0 75 7514.5 76 5594.0 77 4283.0 78 2972.0 79 2190.5 80 1409.0 81 1051.0 82 693.0 83 526.5 84 360.0 85 260.0 86 160.0 87 95.5 88 31.0 89 19.0 90 7.0 91 8.5 92 10.0 93 6.0 94 2.0 95 4.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1670429.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.27036764818639 #Duplication Level Percentage of deduplicated Percentage of total 1 69.78658629262293 26.70758314330564 2 7.835522983705953 5.9973669060448245 3 4.424254811902903 5.079535746623454 4 3.2427882375420825 4.964107922237995 5 2.6291932656228587 5.031009644676129 6 2.177102192050304 4.999110077846258 7 1.8027259704897887 4.829368996170446 8 1.4816757883409148 4.536342172417856 9 1.2506318521552418 4.307592669706205 >10 5.304005287775383 29.043474393205273 >50 0.04121101183563308 1.069933597698566 >100 0.022318494042310927 1.6046204674492883 >500 0.0013225412758101445 0.32215900654306606 >1k 3.306353189525361E-4 0.1834129929238705 >5k 0.0 0.0 >10k+ 3.306353189525361E-4 1.324382263151218 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10806 0.6468996886428576 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10127 0.6062514479813269 No Hit TCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACGTGAGGGC 1786 0.10691864185787005 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.98648610626372E-5 0.0 0.0 0.045377564685479 0.0 2 5.98648610626372E-5 0.0 0.0 0.11218674963138212 0.0 3 5.98648610626372E-5 0.0 0.0 0.20892836510860383 0.0 4 5.98648610626372E-5 0.0 0.0 0.3068672778070783 0.0 5 5.98648610626372E-5 0.0 0.0 0.48185226669316683 0.0 6 5.98648610626372E-5 0.0 0.0 1.0039935848814885 0.0 7 5.98648610626372E-5 0.0 0.0 1.3276828886471679 0.0 8 5.98648610626372E-5 0.0 0.0 2.1412463504884074 0.0 9 5.98648610626372E-5 0.0 0.0 3.094893587216218 0.0 10 5.98648610626372E-5 0.0 0.0 4.258846080857073 0.0 11 5.98648610626372E-5 0.0 0.0 4.937174821557815 0.0 12 5.98648610626372E-5 0.0 0.0 5.521695324973405 0.0 13 5.98648610626372E-5 0.0 0.0 5.8716653027455825 0.0 14 5.98648610626372E-5 0.0 0.0 6.088256370070203 0.0 15 5.98648610626372E-5 0.0 0.0 6.233787847313475 0.0 16 5.98648610626372E-5 0.0 0.0 6.424038375770536 0.0 17 5.98648610626372E-5 0.0 0.0 6.61279228270103 0.0 18 5.98648610626372E-5 0.0 0.0 6.913134290652281 0.0 19 5.98648610626372E-5 0.0 0.0 7.060162389422119 0.0 20 5.98648610626372E-5 0.0 0.0 7.211800082493778 0.0 21 5.98648610626372E-5 0.0 0.0 7.382414936522294 0.0 22 5.98648610626372E-5 0.0 0.0 7.552730466245498 0.0 23 5.98648610626372E-5 0.0 0.0 7.745794643172502 0.0 24 5.98648610626372E-5 0.0 0.0 7.912518281231947 0.0 25 5.98648610626372E-5 0.0 0.0 8.061162731250475 0.0 26 5.98648610626372E-5 0.0 0.0 8.202084614191923 0.0 27 5.98648610626372E-5 0.0 0.0 8.368688522529242 0.0 28 5.98648610626372E-5 0.0 0.0 8.514878513244202 0.0 29 5.98648610626372E-5 0.0 0.0 8.675256476031008 0.0 30 5.98648610626372E-5 0.0 0.0 8.885322273499801 0.0 31 5.98648610626372E-5 0.0 0.0 9.05689496530532 0.0 32 5.98648610626372E-5 0.0 0.0 9.275401708183946 0.0 33 5.98648610626372E-5 0.0 0.0 9.456911966925862 0.0 34 5.98648610626372E-5 0.0 0.0 9.63327384761639 0.0 35 5.98648610626372E-5 0.0 0.0 9.81711883593975 0.0 36 5.98648610626372E-5 0.0 0.0 9.994917473295782 0.0 37 5.98648610626372E-5 0.0 0.0 10.186125839529845 0.0 38 5.98648610626372E-5 0.0 0.0 10.423968932531704 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13215 0.0 42.102158 1 GTTTTTA 7170 0.0 41.36123 2 CAATCGA 80 0.0 41.250004 2 CTATCTC 810 0.0 40.46914 6 TATCTCT 850 0.0 38.564705 7 CCGGTAT 40 4.1260319E-7 38.500004 42 TACGTAG 80 0.0 38.500004 1 GAGCGAT 1880 0.0 37.914894 7 TTATTTT 8130 0.0 37.23493 6 GACCGAT 1060 0.0 37.150944 9 TATTTTT 8200 0.0 36.943905 7 TTGATCC 1090 0.0 36.935783 17 GTTGATC 1085 0.0 36.90323 16 ATCGCTA 30 1.3013478E-4 36.666664 42 AATCGTT 145 0.0 36.41379 22 TTTTATT 8495 0.0 35.919952 4 ATGTCTC 1595 0.0 35.86207 8 CATATGC 1075 0.0 35.813953 33 TCGACAG 80 0.0 35.75 1 TTTATTT 8520 0.0 35.685448 5 >>END_MODULE