##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546702_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4258890 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33315840512434 31.0 31.0 33.0 30.0 34.0 2 31.7445853262235 31.0 31.0 34.0 30.0 34.0 3 31.768789520274062 31.0 31.0 34.0 30.0 34.0 4 35.59116929528586 37.0 35.0 37.0 33.0 37.0 5 35.52233375363064 37.0 35.0 37.0 33.0 37.0 6 35.59317052095734 37.0 35.0 37.0 33.0 37.0 7 35.96925489975087 37.0 35.0 37.0 35.0 37.0 8 35.94753233823837 37.0 35.0 37.0 35.0 37.0 9 37.67282390482027 39.0 37.0 39.0 35.0 39.0 10 37.11052786054582 39.0 37.0 39.0 33.0 39.0 11 36.89302048186264 39.0 37.0 39.0 32.0 39.0 12 36.562551744703434 39.0 35.0 39.0 32.0 39.0 13 36.4815907431279 39.0 35.0 39.0 32.0 39.0 14 37.588945476403474 40.0 36.0 41.0 32.0 41.0 15 37.71078590900446 40.0 36.0 41.0 33.0 41.0 16 37.72700328019742 40.0 36.0 41.0 33.0 41.0 17 37.62691475947958 40.0 36.0 41.0 32.0 41.0 18 37.45601201251969 39.0 36.0 41.0 32.0 41.0 19 37.34043166177103 39.0 36.0 41.0 32.0 41.0 20 37.15372315321598 39.0 35.0 41.0 32.0 41.0 21 37.066933168032044 39.0 35.0 41.0 32.0 41.0 22 36.98453963356649 39.0 35.0 41.0 32.0 41.0 23 36.891665199148136 38.0 35.0 41.0 31.0 41.0 24 36.76803134149978 38.0 35.0 41.0 31.0 41.0 25 36.66708461594453 38.0 35.0 41.0 31.0 41.0 26 36.51103714817711 38.0 35.0 40.0 31.0 41.0 27 36.41212710354106 38.0 35.0 40.0 31.0 41.0 28 36.314311005919386 38.0 35.0 40.0 30.0 41.0 29 36.30800936394225 38.0 35.0 40.0 30.0 41.0 30 36.246400587946624 38.0 35.0 40.0 30.0 41.0 31 36.131949874263015 38.0 35.0 40.0 30.0 41.0 32 35.943536461378436 38.0 35.0 40.0 29.0 41.0 33 35.68582776263299 38.0 35.0 41.0 27.0 41.0 34 35.40587101333916 38.0 35.0 41.0 26.0 41.0 35 35.21869078562724 38.0 34.0 41.0 25.0 41.0 36 35.076270577544854 38.0 34.0 40.0 24.0 41.0 37 35.035633228376405 38.0 34.0 40.0 24.0 41.0 38 34.94485746286004 38.0 34.0 40.0 23.0 41.0 39 34.84492884296143 38.0 34.0 40.0 23.0 41.0 40 34.72740150602622 38.0 34.0 40.0 23.0 41.0 41 34.6447440530279 38.0 34.0 40.0 23.0 41.0 42 34.56977076186518 38.0 34.0 40.0 23.0 41.0 43 34.44963194635222 37.0 34.0 40.0 23.0 41.0 44 34.30809248419189 37.0 33.0 40.0 22.0 41.0 45 34.19678460819603 37.0 33.0 40.0 22.0 41.0 46 34.148968158369904 37.0 33.0 40.0 22.0 41.0 47 34.10888400498722 37.0 33.0 40.0 22.0 41.0 48 34.00989271852525 37.0 33.0 40.0 22.0 41.0 49 33.92831348074264 36.0 33.0 40.0 21.0 41.0 50 33.839129914132556 36.0 33.0 40.0 20.0 41.0 51 33.48627271425183 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 7.0 12 10.0 13 34.0 14 62.0 15 124.0 16 377.0 17 916.0 18 2150.0 19 4257.0 20 7397.0 21 11527.0 22 17288.0 23 25979.0 24 38634.0 25 59731.0 26 82875.0 27 95424.0 28 96190.0 29 98640.0 30 107232.0 31 124504.0 32 150066.0 33 189179.0 34 292998.0 35 417806.0 36 327631.0 37 412540.0 38 610475.0 39 1084210.0 40 620.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.528567302747902 23.555762182164834 26.624049928502497 18.291620586584767 2 35.417679254453624 24.544822712021208 26.638490310855644 13.399007722669523 3 28.3847669228367 24.40288431962319 33.7706773361134 13.44167142142671 4 24.571684171227716 26.761691426639334 33.72961029751884 14.937014104614112 5 22.051966592234127 30.87478192674617 32.57109246775568 14.502159013264018 6 20.3060187044042 39.547534686268015 29.990490479913777 10.155956129414003 7 83.79810232243614 3.547637999572659 10.912420842050393 1.7418388359408201 8 83.8985275506059 3.092261129073538 10.765316784420353 2.2438945359001994 9 78.38800720375497 5.082404100598983 13.179866115349304 3.3497225802967443 10 37.94002662665624 28.50075958759207 19.610320999133577 13.948892786618108 11 29.49709900936629 23.967066536116217 29.73659803375997 16.79923642075752 12 27.420900751134685 22.11977768855265 31.938650681280805 18.52067087903186 13 22.39696258884357 26.421626292296818 33.09005398120167 18.091357137657933 14 19.12021677009737 28.831784807778554 33.61197401200782 18.43602441011625 15 18.601067414279306 23.748723258877313 39.93716672654142 17.713042600301957 16 21.589639553968286 22.36296311949827 37.56124248337008 18.486154843163362 17 21.118155200063864 22.869832280242036 32.64510236235263 23.366910157341465 18 22.626881652261506 22.98551970114279 34.70779945009145 19.679799196504252 19 25.178485473914563 24.959085583332747 30.43647523180923 19.42595371094346 20 26.25947136460439 24.535923679644224 30.06536914548157 19.13923581026981 21 23.845673403163737 25.612589195776366 31.808522878026903 18.733214523032995 22 23.397223220134826 22.80854870635306 31.18880741226 22.60542066125211 23 21.090800654630666 26.5813627494488 30.47984333946169 21.847993256458842 24 21.284935746168603 24.32112592717821 34.94445735860752 19.449480968045666 25 21.624413873098387 25.22206490423561 32.7887078558028 20.364813366863196 26 20.376365672745717 27.386196872894107 31.063540030383503 21.17389742397667 27 19.967338907555725 26.414746565419627 32.27495896818185 21.342955558842796 28 19.593509106833 26.24888175087875 34.107056063903975 20.050553078384272 29 20.44182873941332 24.543273012451603 33.90864755840137 21.10625068973371 30 21.63157536353369 25.65652083054505 33.10064359492731 19.611260210993944 31 24.339722322013483 25.302367518297018 30.26565607470491 20.092254084984585 32 24.97657840423209 24.98545395631256 30.33248099857005 19.7054866408853 33 23.51880419545938 25.817900908452675 29.509614007405688 21.153680888682263 34 20.908922277870527 27.346092526456424 30.9597336395164 20.785251556156652 35 20.906691649702154 27.367882241616947 31.331356292367257 20.39406981631364 36 23.325350032520213 28.048341234453112 28.510104745602728 20.11620398742395 37 21.18946486056226 29.677920772783516 29.42571890797837 19.706895458675852 38 21.27523838371031 29.835544003249677 27.969588319961304 20.919629293078714 39 20.90878139609147 29.30014628224725 28.32094747692474 21.470124844736542 40 23.011794152936563 26.642200197704096 28.867122654024875 21.478882995334462 41 20.10594309784944 26.559056467765075 29.473289988705975 23.861710445679506 42 22.19118127023708 27.291007750845882 27.851130224072467 22.666680754844574 43 21.716268793042317 26.277175508172316 29.23630335603878 22.770252342746584 44 21.295525359894242 27.824714890499635 28.946321694150356 21.933438055455763 45 20.564395887191264 28.71668439429053 28.742536200747143 21.976383517771062 46 22.344765889703655 27.731897278398833 28.693086696298803 21.230250135598713 47 21.024398376102692 27.972499876728445 29.332032524906726 21.671069222262137 48 21.522955511882206 26.60272981927216 30.34969205591128 21.524622612934355 49 21.637727201219096 26.2574520591046 30.376389153042226 21.728431586634077 50 20.62664215323711 27.773809607667726 30.364273320043484 21.235274919051676 51 20.54293489618187 27.963413001979387 29.34250473714982 22.15114736468892 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4595.0 1 5576.0 2 6557.0 3 45990.0 4 85423.0 5 59723.0 6 34023.0 7 34240.5 8 34458.0 9 35539.5 10 36621.0 11 36508.0 12 36395.0 13 35644.5 14 34894.0 15 33691.0 16 32488.0 17 30874.0 18 29260.0 19 28032.0 20 26804.0 21 26411.5 22 26019.0 23 27267.0 24 28515.0 25 30873.5 26 37594.0 27 41956.0 28 48634.0 29 55312.0 30 64286.0 31 73260.0 32 82625.5 33 91991.0 34 103797.5 35 115604.0 36 124413.0 37 133222.0 38 154096.5 39 174971.0 40 200281.0 41 225591.0 42 250937.5 43 276284.0 44 302786.5 45 329289.0 46 332907.0 47 336525.0 48 326395.0 49 316265.0 50 298086.5 51 279908.0 52 264219.5 53 248531.0 54 229653.0 55 210775.0 56 201857.0 57 192939.0 58 177103.0 59 161267.0 60 151722.0 61 142177.0 62 128717.0 63 115257.0 64 104470.5 65 93684.0 66 78213.5 67 62743.0 68 53681.0 69 44619.0 70 38024.5 71 31430.0 72 26969.5 73 22509.0 74 18196.5 75 12002.5 76 10121.0 77 7490.5 78 4860.0 79 3756.5 80 2653.0 81 1859.0 82 1065.0 83 791.5 84 518.0 85 361.5 86 205.0 87 146.5 88 88.0 89 73.0 90 58.0 91 38.0 92 18.0 93 14.5 94 11.0 95 12.5 96 14.0 97 7.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4258890.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.305767696944372 #Duplication Level Percentage of deduplicated Percentage of total 1 79.34424510026108 17.698342992958402 2 6.4872044790961425 2.8940415222659115 3 2.324010203846152 1.555164951969618 4 1.3455863004955002 1.2005734174017364 5 0.913798192302439 1.019148509969295 6 0.6487342161753374 0.868230883383982 7 0.5487799910739439 0.8568671298338619 8 0.4364529180134297 0.7788333919888856 9 0.37927888819581007 0.7614096095205968 >10 5.393468934040403 29.527680279642336 >50 1.7079336845000954 26.816956661976672 >100 0.46537010443254057 13.673077115691576 >500 0.003210617229468648 0.4916150397465419 >1k 0.0018193497633387503 0.6596483632690848 >5k 0.0 0.0 >10k+ 1.0702057431404413E-4 1.1984101303815942 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50202 1.1787578453540712 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.6960593018368634E-5 0.0 0.0 0.041630565710783794 0.0 2 4.6960593018368634E-5 0.0 0.0 0.12944687465513313 0.0 3 4.6960593018368634E-5 0.0 0.0 0.224589036110348 0.0 4 4.6960593018368634E-5 0.0 0.0 0.3717400543334061 0.0 5 4.6960593018368634E-5 0.0 0.0 0.6389223483114145 0.0 6 4.6960593018368634E-5 0.0 0.0 1.2366602565457196 0.0 7 4.6960593018368634E-5 0.0 0.0 1.551249269175771 0.0 8 4.6960593018368634E-5 0.0 0.0 2.2838110399658125 0.0 9 4.6960593018368634E-5 0.0 0.0 2.677739974500398 0.0 10 4.6960593018368634E-5 0.0 0.0 3.2160257719734484 0.0 11 4.6960593018368634E-5 0.0 0.0 3.5511600440490363 0.0 12 4.6960593018368634E-5 0.0 0.0 3.839286762513237 0.0 13 7.044088952755296E-5 0.0 0.0 3.9960412220085515 0.0 14 7.044088952755296E-5 0.0 0.0 4.080617250034633 0.0 15 7.044088952755296E-5 0.0 0.0 4.1515747060853885 0.0 16 7.044088952755296E-5 0.0 0.0 4.268811826555746 0.0 17 7.044088952755296E-5 0.0 0.0 4.395229742961194 0.0 18 7.044088952755296E-5 0.0 0.0 4.597042891457633 0.0 19 7.044088952755296E-5 0.0 0.0 4.689296976442218 0.0 20 7.044088952755296E-5 0.0 0.0 4.788454268600504 0.0 21 7.044088952755296E-5 0.0 0.0 4.907264568936976 0.0 22 7.044088952755296E-5 0.0 0.0 5.03758021456295 0.0 23 7.044088952755296E-5 0.0 0.0 5.186233971762595 0.0 24 7.044088952755296E-5 0.0 0.0 5.308472395389409 0.0 25 9.392118603673727E-5 0.0 0.0 5.417961018011735 0.0 26 9.392118603673727E-5 0.0 0.0 5.523199706965899 0.0 27 9.392118603673727E-5 0.0 0.0 5.637689632744682 0.0 28 9.392118603673727E-5 0.0 0.0 5.753658817203544 0.0 29 9.392118603673727E-5 0.0 0.0 5.881086386358887 0.0 30 9.392118603673727E-5 0.0 0.0 6.056953807212677 0.0 31 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.189241797745422 0.0 32 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.328996522568087 0.0 33 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.46276377178091 0.0 34 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.600898356144441 0.0 35 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.755821352512039 0.0 36 9.392118603673727E-5 2.3480296509184317E-5 0.0 6.8971492572008195 0.0 37 9.392118603673727E-5 2.3480296509184317E-5 0.0 7.0509451993359775 0.0 38 9.392118603673727E-5 2.3480296509184317E-5 0.0 7.222539206225096 0.0 39 9.392118603673727E-5 2.3480296509184317E-5 0.0 7.426770825261982 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 32760 0.0 42.47253 1 AGGGCGA 4565 0.0 38.444687 6 CACGACC 1405 0.0 38.434166 27 GGGCGAT 9115 0.0 37.66868 7 ACGACCA 1470 0.0 37.5 28 TACGGGA 1245 0.0 36.86747 4 ACACGAC 1465 0.0 36.706482 26 AACACGT 1365 0.0 36.593407 41 AACGGGA 1310 0.0 36.412216 4 AGGGATT 5040 0.0 36.383926 6 CTACGGG 955 0.0 36.282722 3 GTTTTTT 39900 0.0 36.095863 2 CGTATCG 25 0.0021077471 36.000004 39 ATAGCGG 825 0.0 36.0 2 CGTAAGG 750 0.0 36.0 2 TAGGGCG 1915 0.0 35.953003 5 TAGGGAT 4510 0.0 35.920177 5 TCAAGCG 1520 0.0 35.82237 17 ATGGGAC 2755 0.0 35.689655 5 ACGGGAA 1480 0.0 35.574326 5 >>END_MODULE