##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546695_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2293634 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.387662111740582 31.0 31.0 33.0 30.0 34.0 2 31.802984259912435 31.0 31.0 34.0 30.0 34.0 3 31.913433006312253 31.0 31.0 34.0 30.0 34.0 4 35.674356065527455 37.0 35.0 37.0 33.0 37.0 5 35.594340247833784 37.0 35.0 37.0 33.0 37.0 6 35.66096944848219 37.0 35.0 37.0 33.0 37.0 7 36.00070804670667 37.0 35.0 37.0 35.0 37.0 8 35.98145868085318 37.0 35.0 37.0 35.0 37.0 9 37.72737673055073 39.0 38.0 39.0 35.0 39.0 10 37.175668393475156 39.0 37.0 39.0 33.0 39.0 11 36.92694518829072 39.0 37.0 39.0 33.0 39.0 12 36.41560118135675 38.0 35.0 39.0 32.0 39.0 13 36.23975708417298 39.0 35.0 39.0 32.0 39.0 14 37.32218959084143 39.0 35.0 41.0 32.0 41.0 15 37.50477146746168 39.0 35.0 41.0 33.0 41.0 16 37.57531323654951 39.0 35.0 41.0 33.0 41.0 17 37.486385796513304 39.0 35.0 41.0 33.0 41.0 18 37.394419074708516 39.0 35.0 41.0 32.0 41.0 19 37.321455820763035 39.0 35.0 41.0 32.0 41.0 20 37.18499507768022 39.0 35.0 41.0 32.0 41.0 21 37.07628941670728 39.0 35.0 41.0 32.0 41.0 22 36.984308743243254 39.0 35.0 41.0 32.0 41.0 23 36.914936297595865 38.0 35.0 41.0 32.0 41.0 24 36.79999293697251 38.0 35.0 41.0 31.0 41.0 25 36.67658309913438 38.0 35.0 41.0 31.0 41.0 26 36.54119358188795 38.0 35.0 40.0 31.0 41.0 27 36.45130391335322 38.0 35.0 40.0 31.0 41.0 28 36.373103119329414 38.0 35.0 40.0 31.0 41.0 29 36.40542824182062 38.0 35.0 40.0 31.0 41.0 30 36.3911487185837 38.0 35.0 40.0 31.0 41.0 31 36.32555586462356 38.0 35.0 40.0 31.0 41.0 32 36.20659268218033 38.0 35.0 40.0 30.0 41.0 33 36.06146229084501 38.0 35.0 41.0 30.0 41.0 34 35.93201705241551 38.0 35.0 41.0 30.0 41.0 35 35.834857261446246 38.0 35.0 41.0 29.0 41.0 36 35.7072091711232 38.0 35.0 41.0 29.0 41.0 37 35.6523364233352 38.0 35.0 40.0 29.0 41.0 38 35.57230926991839 38.0 35.0 40.0 29.0 41.0 39 35.478707152056515 38.0 35.0 40.0 28.0 41.0 40 35.32423307293143 38.0 34.0 40.0 27.0 41.0 41 35.28913026228248 38.0 34.0 40.0 27.0 41.0 42 35.21848559970771 38.0 34.0 40.0 27.0 41.0 43 35.107338398366956 37.0 34.0 40.0 27.0 41.0 44 34.96421573799481 37.0 34.0 40.0 26.0 41.0 45 34.83468286570569 37.0 34.0 40.0 26.0 41.0 46 34.807047680667445 37.0 34.0 40.0 26.0 41.0 47 34.77228668566999 37.0 34.0 40.0 26.0 41.0 48 34.694252003589064 36.0 34.0 40.0 26.0 41.0 49 34.617624695134445 36.0 34.0 40.0 25.0 41.0 50 34.51469676504621 36.0 34.0 40.0 25.0 41.0 51 34.15346607174467 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 5.0 11 3.0 12 6.0 13 7.0 14 14.0 15 56.0 16 157.0 17 374.0 18 896.0 19 1806.0 20 3170.0 21 5039.0 22 7710.0 23 11335.0 24 16678.0 25 23830.0 26 31716.0 27 37000.0 28 40371.0 29 45917.0 30 53810.0 31 66043.0 32 81847.0 33 105867.0 34 177301.0 35 284674.0 36 171710.0 37 213373.0 38 320475.0 39 592069.0 40 371.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.85012604452149 23.688217038987037 27.957075976376355 14.504580940115119 2 31.225644544857634 26.276773016095856 28.97450072679425 13.52308171225226 3 28.52285935768305 25.610799281838343 31.713298634394153 14.153042726084458 4 24.651055922610148 28.712819918086318 31.547753477669062 15.088370681634473 5 23.039813675590786 32.47488483341283 30.21083573054812 14.274465760448265 6 20.59051269731788 41.53858026171569 26.855723275814714 11.01518376515172 7 87.35643960631906 4.141157656365401 6.976047617013002 1.5263551203025418 8 87.65095041318712 3.4104395034255686 6.781639965225489 2.156970118161834 9 82.4385233215064 5.5768269915775575 9.002787715912827 2.98186197100322 10 43.12008803496983 29.81207986976126 14.861176630621975 12.206655464646932 11 35.773580266075584 24.705685388340076 24.640853771787476 14.879880573796866 12 33.10685139826145 22.44865571403284 27.148751718888022 17.295741168817695 13 22.344410660114036 32.41742143689883 28.094892210352658 17.143275692634482 14 17.749431687880453 34.72550546425454 29.488139781673972 18.036923066191033 15 17.25388619108367 25.025396379718824 40.90360537034243 16.817112058855074 16 19.071133406637678 22.096201922364248 40.05704484673666 18.775619824261412 17 18.655417560081514 22.230966230880778 30.629908695110032 28.48370751392768 18 22.347898574925207 23.5077610464442 32.88118330997884 21.263157068651754 19 26.70434777300999 25.47163148087271 27.420939870964588 20.403080875152703 20 29.189356279162237 23.29198991643828 27.067047314436394 20.45160648996309 21 23.7546618161398 26.97396358791333 28.54714396455581 20.72423063139106 22 23.807372928723588 24.135847306065397 27.250424435633587 24.806355329577432 23 21.13349383554656 28.666605046838335 26.327434978728082 23.872466138887024 24 21.486558012307107 24.190781964341305 35.19092409686986 19.13173592648173 25 20.50152727069794 25.973150031783625 31.95413915210535 21.571183545413085 26 19.627325022213657 30.6266823739097 28.258780607542445 21.487211996334203 27 19.90086474127956 30.51323794467644 28.554119794178145 21.031777519865855 28 18.419983310327627 28.922356400367278 33.67773585497948 18.979924434325614 29 19.045148441294472 25.11329183296027 33.236383834561224 22.605175891184036 30 20.64379059605848 28.102216831456104 31.1630800729323 20.09091249955311 31 26.048053002353473 27.16863283331168 26.78888610824569 19.99442805608916 32 26.490407798279936 26.032967770795167 27.924681967567622 19.551942463357275 33 25.22808782918286 27.403892687325005 25.882943834979777 21.48507564851236 34 20.64174144610692 27.998276970083282 28.575134480915438 22.78484710289436 35 20.726454177083177 27.094514643574346 29.726059170730814 22.452972008611663 36 25.793348023267882 27.11971482808504 26.447201253556585 20.6397358950905 37 21.39273310388667 30.185155957750887 28.22887173803667 20.19323920032577 38 21.545503772615856 30.341327343420964 26.006634013970842 22.106534869992338 39 22.185884931946422 30.00696710983531 26.461370907476955 21.34577705074131 40 23.904162564733518 26.475976550748726 27.679437957407327 21.94042292711043 41 19.01724512280512 26.408180206606634 29.045654188942088 25.528920481646157 42 22.808477725740026 26.43634511870682 26.518398314639562 24.23677884091359 43 22.65814859737866 26.02686391987562 28.001154499802496 23.313832982943225 44 21.840363370965026 28.723196464649547 27.70476893872344 21.731671225661984 45 20.13102351988155 31.638875252110843 26.125310315420858 22.10479091258675 46 22.314676186348827 29.67003453907642 26.358782613093457 21.656506661481302 47 21.484465263420407 28.383299166301164 27.782287845401665 22.349947724876767 48 23.048359066878152 26.020106084928983 29.37090224508357 21.5606326031093 49 21.905979768350136 26.14157271822793 29.411231260087707 22.541216253334227 50 20.82293862054713 29.780078251368792 28.178078978599025 21.218904149485052 51 20.330663043885817 29.451167884675584 26.64104211918728 23.57712695225132 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2977.0 1 3493.5 2 4010.0 3 14743.5 4 25477.0 5 17750.0 6 10023.0 7 10155.0 8 10287.0 9 10971.0 10 11655.0 11 11852.5 12 12050.0 13 12060.0 14 12070.0 15 12052.5 16 12035.0 17 11443.0 18 10851.0 19 11197.5 20 11544.0 21 11652.0 22 11760.0 23 11801.5 24 11843.0 25 13719.0 26 19072.5 27 22550.0 28 26435.5 29 30321.0 30 35318.5 31 40316.0 32 45978.5 33 51641.0 34 60559.0 35 69477.0 36 73019.0 37 76561.0 38 83530.0 39 90499.0 40 110079.0 41 129659.0 42 150602.0 43 171545.0 44 176713.5 45 181882.0 46 179396.5 47 176911.0 48 175745.0 49 174579.0 50 176458.5 51 178338.0 52 165505.0 53 152672.0 54 137787.5 55 122903.0 56 113940.0 57 104977.0 58 96436.0 59 87895.0 60 82847.0 61 77799.0 62 68052.0 63 58305.0 64 49700.0 65 41095.0 66 35867.0 67 30639.0 68 25456.5 69 20274.0 70 17066.5 71 13859.0 72 12320.5 73 10782.0 74 9131.0 75 5819.5 76 4159.0 77 3250.5 78 2342.0 79 1619.0 80 896.0 81 740.0 82 584.0 83 424.5 84 265.0 85 197.5 86 130.0 87 99.5 88 69.0 89 50.5 90 32.0 91 21.5 92 11.0 93 8.0 94 5.0 95 5.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2293634.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.172098947471262 #Duplication Level Percentage of deduplicated Percentage of total 1 79.79500228183169 16.09632681542804 2 6.426735378844514 2.5928148394253148 3 2.2275489598147757 1.3480301408316104 4 1.2426787234759498 1.0026975267949654 5 0.789059035961762 0.7958488474408474 6 0.6222233113678177 0.7530930122600903 7 0.5020707627970361 0.708947477404193 8 0.40537797452264385 0.6541859690557004 9 0.34330399900428904 0.6232646013279384 >10 4.978764606382375 24.660427087527008 >50 1.8221047867964149 25.946325124405927 >100 0.8409809619254012 23.345695221504915 >500 0.0030573179923363046 0.36620261966617385 >1k 8.735194263818013E-4 0.41862426256317214 >5k 0.0 0.0 >10k+ 2.1837985659545032E-4 0.6875164543642458 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15607 0.6804485807238644 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4668 0.20351982923169082 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.71978702792163E-5 0.0 0.0 0.03243760774386847 0.0 2 8.71978702792163E-5 0.0 0.0 0.11244165372504943 0.0 3 8.71978702792163E-5 0.0 0.0 0.17853763939669537 0.0 4 8.71978702792163E-5 0.0 0.0 0.30785208102077316 0.0 5 8.71978702792163E-5 0.0 0.0 0.5209200770480382 0.0 6 8.71978702792163E-5 0.0 0.0 0.9901754159556407 0.0 7 8.71978702792163E-5 0.0 0.0 1.2213369700658432 0.0 8 8.71978702792163E-5 0.0 0.0 1.8790705055819716 0.0 9 8.71978702792163E-5 0.0 0.0 2.2200141783737073 0.0 10 8.71978702792163E-5 0.0 0.0 2.720660750581828 0.0 11 8.71978702792163E-5 0.0 0.0 3.042508089782415 0.0 12 8.71978702792163E-5 0.0 0.0 3.3062816473770447 0.0 13 8.71978702792163E-5 0.0 0.0 3.4529920641218257 0.0 14 8.71978702792163E-5 0.0 0.0 3.5207884082639165 0.0 15 8.71978702792163E-5 0.0 0.0 3.581826917459368 0.0 16 8.71978702792163E-5 0.0 0.0 3.693876180768161 0.0 17 8.71978702792163E-5 0.0 0.0 3.811026519488288 0.0 18 8.71978702792163E-5 0.0 0.0 3.9797543984785717 0.0 19 8.71978702792163E-5 0.0 0.0 4.061371605059918 0.0 20 8.71978702792163E-5 0.0 0.0 4.155632502831751 0.0 21 8.71978702792163E-5 0.0 0.0 4.263539867302281 0.0 22 8.71978702792163E-5 0.0 0.0 4.382739355973969 0.0 23 8.71978702792163E-5 0.0 0.0 4.51619569643631 0.0 24 8.71978702792163E-5 0.0 0.0 4.624975039609633 0.0 25 8.71978702792163E-5 0.0 0.0 4.716881594883927 0.0 26 8.71978702792163E-5 0.0 0.0 4.81105529478548 0.0 27 8.71978702792163E-5 0.0 0.0 4.909370893525296 0.0 28 8.71978702792163E-5 0.0 0.0 5.009779241151814 0.0 29 8.71978702792163E-5 0.0 0.0 5.115506658865364 0.0 30 8.71978702792163E-5 0.0 0.0 5.287460859055979 0.0 31 8.71978702792163E-5 0.0 0.0 5.408055513652134 0.0 32 8.71978702792163E-5 0.0 0.0 5.526077831075054 0.0 33 1.3079680541882446E-4 0.0 0.0 5.644100148497973 0.0 34 1.3079680541882446E-4 0.0 0.0 5.762689252077707 0.0 35 1.3079680541882446E-4 0.0 0.0 5.893311661755973 0.0 36 1.3079680541882446E-4 0.0 0.0 6.018571402412068 0.0 37 1.3079680541882446E-4 0.0 0.0 6.143177159041068 0.0 38 1.3079680541882446E-4 0.0 0.0 6.275935916541174 0.0 39 1.3079680541882446E-4 0.0 0.0 6.40660192515458 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 195 0.0 41.53846 1 CGTTTTT 8750 0.0 40.782856 1 ATAGCGG 435 0.0 40.34483 2 CGTTGAT 445 0.0 39.4382 25 TCGATAG 110 0.0 38.863636 1 CGTAAGG 400 0.0 38.8125 2 ACTACGG 145 0.0 38.793106 2 TACGGGT 250 0.0 38.699997 4 TTTACGG 205 0.0 38.414635 2 TAGGGCG 885 0.0 37.627117 5 CGTTATC 30 1.1402761E-4 37.500004 44 TACGACG 30 1.1402761E-4 37.500004 1 ACGTAGT 30 1.1402761E-4 37.500004 36 ATACCGG 120 0.0 37.500004 2 TACGTAG 240 0.0 37.500004 1 TCGTAAG 150 0.0 37.5 1 AGGGCGA 2325 0.0 37.258064 6 TAACGGG 610 0.0 37.2541 3 CGGTCTA 115 0.0 37.173916 31 TAGGGAT 2575 0.0 37.13592 5 >>END_MODULE