##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546694_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 5685625 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.358623018577553 31.0 31.0 33.0 30.0 34.0 2 31.76581835770034 31.0 31.0 34.0 30.0 34.0 3 31.81184073870507 31.0 31.0 34.0 30.0 34.0 4 35.61860762888865 37.0 35.0 37.0 33.0 37.0 5 35.55224799384413 37.0 35.0 37.0 33.0 37.0 6 35.61720532043531 37.0 35.0 37.0 33.0 37.0 7 35.98672916346048 37.0 35.0 37.0 35.0 37.0 8 35.96175934923601 37.0 35.0 37.0 35.0 37.0 9 37.66554688358799 39.0 37.0 39.0 35.0 39.0 10 37.10301347697043 39.0 37.0 39.0 33.0 39.0 11 36.91484665274266 39.0 37.0 39.0 33.0 39.0 12 36.5838084643289 39.0 35.0 39.0 32.0 39.0 13 36.52156816532923 39.0 35.0 39.0 32.0 39.0 14 37.61302073210949 40.0 36.0 41.0 32.0 41.0 15 37.72261659887875 40.0 36.0 41.0 33.0 41.0 16 37.739977047378254 40.0 36.0 41.0 33.0 41.0 17 37.65539830713422 40.0 36.0 41.0 33.0 41.0 18 37.50849589974717 39.0 36.0 41.0 32.0 41.0 19 37.411588523689126 39.0 36.0 41.0 32.0 41.0 20 37.24485680993734 39.0 35.0 41.0 32.0 41.0 21 37.148925755743655 39.0 35.0 41.0 32.0 41.0 22 37.037678179619654 39.0 35.0 41.0 32.0 41.0 23 36.93252298559965 39.0 35.0 41.0 31.0 41.0 24 36.80813261514785 38.0 35.0 41.0 31.0 41.0 25 36.695822183137295 38.0 35.0 41.0 31.0 41.0 26 36.569858195009346 38.0 35.0 40.0 31.0 41.0 27 36.46169013960646 38.0 35.0 40.0 31.0 41.0 28 36.352236561503794 38.0 35.0 40.0 30.0 41.0 29 36.345255095086294 38.0 35.0 40.0 30.0 41.0 30 36.281292206221835 38.0 35.0 40.0 30.0 41.0 31 36.2002917885017 38.0 35.0 40.0 30.0 41.0 32 36.04915167637683 38.0 35.0 40.0 30.0 41.0 33 35.84324924700451 38.0 35.0 41.0 29.0 41.0 34 35.61012307354073 38.0 35.0 41.0 27.0 41.0 35 35.42479322853688 38.0 35.0 41.0 26.0 41.0 36 35.300346927558536 38.0 35.0 40.0 25.0 41.0 37 35.24823726503243 38.0 34.0 40.0 25.0 41.0 38 35.15104777399142 38.0 34.0 40.0 25.0 41.0 39 35.04459421787402 38.0 34.0 40.0 24.0 41.0 40 34.918651159722984 38.0 34.0 40.0 24.0 41.0 41 34.855716653841924 38.0 34.0 40.0 24.0 41.0 42 34.78231153127405 38.0 34.0 40.0 23.0 41.0 43 34.660125316038254 37.0 34.0 40.0 23.0 41.0 44 34.49061501593932 37.0 34.0 40.0 23.0 41.0 45 34.38690909090909 37.0 34.0 40.0 23.0 41.0 46 34.34562128174123 37.0 33.0 40.0 23.0 41.0 47 34.29808086182258 37.0 33.0 40.0 23.0 41.0 48 34.184071408156534 36.0 33.0 40.0 23.0 41.0 49 34.09266527426624 36.0 33.0 40.0 23.0 41.0 50 34.01197933384632 36.0 33.0 40.0 23.0 41.0 51 33.65078773221941 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 7.0 11 11.0 12 13.0 13 32.0 14 63.0 15 144.0 16 394.0 17 1107.0 18 2507.0 19 5056.0 20 8649.0 21 14253.0 22 21621.0 23 32193.0 24 48401.0 25 73028.0 26 100383.0 27 113151.0 28 116261.0 29 123069.0 30 139172.0 31 165463.0 32 202527.0 33 256776.0 34 398238.0 35 581618.0 36 459358.0 37 576370.0 38 824083.0 39 1420808.0 40 863.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.95878201604925 22.91790260525448 26.698489611959985 16.424825766736287 2 35.92839837309003 24.18091238869957 26.819232714081565 13.071456524128832 3 29.006802242497525 24.954952182038035 32.11249422886666 13.925751346597778 4 25.41826096515335 27.534422337034187 31.613076838518197 15.434239859294275 5 22.99098164229966 30.569233813345058 31.08550071452127 15.354283829834012 6 21.189543805650217 39.8093789161262 28.56546114103551 10.435616137188083 7 84.11019017258437 3.8218489611959985 9.996227327690448 2.0717335385291853 8 83.77281301527977 3.4189205232494224 9.913756183357151 2.894510278113664 9 77.49054853248325 5.5570671649994505 12.888468725953611 4.063915576563702 10 37.642123777069365 26.637405738155433 20.861593932065517 14.858876552709685 11 31.384183796856107 25.87189622952622 26.994552050126412 15.749367923491262 12 27.4965373199956 23.40959876882489 30.618533582499722 18.475330328679785 13 22.667587116631857 27.450720017588214 32.309306364735626 17.572386501044303 14 20.18425414971969 29.835101681873144 32.44359239309663 17.53705177531054 15 19.662693195558976 24.037075959107398 39.028057601407056 17.27217324392657 16 21.845232494228867 22.70195449049137 36.7152775640321 18.737535451247663 17 21.7857315598549 22.902671210289107 31.407312300758495 23.904284929097503 18 23.669834011212487 23.487145212707485 33.336493349455864 19.506527426624164 19 26.74295262174343 25.477128723755083 28.61813784764208 19.161780806859404 20 28.190286907771796 24.977359569088712 27.35739694404749 19.47495657909201 21 25.20867978454436 26.6019830713422 29.387217764098057 18.802119380015387 22 24.11557216664835 23.95052434868638 29.22457953171375 22.70932395295152 23 22.28437506870397 27.188708365395186 28.4024535561174 22.124463009783447 24 21.539725184126635 25.353712212817413 33.617447510168184 19.489115092887765 25 21.589728481917113 26.019320655161042 31.661215785423767 20.729735077498077 26 20.329057931186107 28.462658019127186 30.047250742002856 21.16103330768385 27 20.92009233813345 27.248086182257886 30.2086050346268 21.623216444981864 28 20.079111795097283 26.99289875783225 32.78290425414972 20.145085192920742 29 21.21940859624052 25.220921182807523 32.286371331208095 21.27329888974387 30 22.18122018247774 26.740402330438606 31.592340331977574 19.48603715510608 31 25.040747499175552 25.89462020446301 29.0345036825327 20.030128613828737 32 25.42174343190063 26.382007255139055 28.448130152797624 19.74811916016269 33 24.32328899637243 25.93732439265692 28.881837968561065 20.857548642409583 34 22.451621413652852 26.96166208640211 29.8216642849291 20.76505221501594 35 21.498410464988456 26.58390238540178 31.127096845113773 20.790590304495986 36 25.228906232824006 27.30285588655601 28.14471584038694 19.323522040233044 37 22.246824227767394 28.03250302297461 29.705898647905904 20.014774101352096 38 22.523680334176102 28.681596130592503 28.359925250082448 20.43479828514895 39 21.973169176651645 27.909772452456856 28.428888644608115 21.68816972628339 40 23.666703308783116 26.061444432230406 29.501505990986036 20.770346268000438 41 20.491203693525335 25.90805760140706 29.616022864680662 23.98471584038694 42 22.806586786852808 26.81949653732 27.83889194239859 22.535024733428603 43 21.985533692426074 25.869345938221393 29.679445971199296 22.465674398153237 44 22.406050346268 27.6236297680554 28.653789161261955 21.316530724414644 45 21.02196328459932 28.963447290315486 27.778036715400685 22.236552709684513 46 22.688182917445314 27.969801033307682 27.963293393426405 21.3787226558206 47 22.09018357700341 27.26539298669891 28.86344069473453 21.780982741563154 48 22.256884687259536 26.473149389908762 29.836614268440144 21.433351654391558 49 22.38909530614488 25.464641090469385 29.940367154006815 22.20589644937892 50 21.435743651753324 27.68260305595251 29.454052984500382 21.427600307793778 51 21.027310102231507 28.182337034187093 28.26201165219303 22.52834121138837 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4873.0 1 6307.5 2 7742.0 3 46990.0 4 86238.0 5 60453.0 6 34668.0 7 35595.5 8 36523.0 9 38455.0 10 40387.0 11 41542.0 12 42697.0 13 42438.0 14 42179.0 15 41311.5 16 40444.0 17 38769.0 18 37094.0 19 36608.0 20 36122.0 21 35069.0 22 34016.0 23 35098.0 24 36180.0 25 41757.5 26 49458.0 27 51581.0 28 58580.5 29 65580.0 30 77173.5 31 88767.0 32 105462.5 33 122158.0 34 135048.0 35 147938.0 36 165279.0 37 182620.0 38 205353.0 39 228086.0 40 263094.0 41 298102.0 42 333235.0 43 368368.0 44 413817.0 45 459266.0 46 466161.5 47 473057.0 48 452714.5 49 432372.0 50 408885.0 51 385398.0 52 359966.0 53 334534.0 54 310545.0 55 286556.0 56 270380.0 57 254204.0 58 233904.0 59 213604.0 60 198817.0 61 184030.0 62 169596.0 63 155162.0 64 142872.5 65 130583.0 66 112727.5 67 94872.0 68 81310.0 69 67748.0 70 57647.0 71 47546.0 72 41395.0 73 35244.0 74 28880.5 75 18059.0 76 13601.0 77 10792.5 78 7984.0 79 5934.0 80 3884.0 81 2963.5 82 2043.0 83 1556.5 84 1070.0 85 708.5 86 347.0 87 270.5 88 194.0 89 123.5 90 53.0 91 45.0 92 37.0 93 26.5 94 16.0 95 10.5 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 5685625.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.750215074902385 #Duplication Level Percentage of deduplicated Percentage of total 1 79.49282780415662 16.494932738484298 2 7.451418034434047 3.0923705365502574 3 2.6667321897710687 1.6600579945474525 4 1.3581988784753425 1.1273167537141826 5 0.9183622484356266 0.9528107085855095 6 0.6596795847339814 0.8213095958251444 7 0.5058189593202531 0.7347096536400987 8 0.41341834979549436 0.6862815739334188 9 0.3298351574532298 0.6159735410776929 >10 3.813653113639787 18.45137718184351 >50 1.3439961729141305 20.195933978581373 >100 1.0391536129104448 32.7179853354904 >500 0.004834125775055799 0.6841263118213198 >1k 0.0018991208362565586 0.7014654636869202 >5k 8.632367437529811E-5 0.1262641417106075 >10k+ 8.632367437529811E-5 0.9370844905079346 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52315 0.9201275145652412 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7049 0.12397933384632295 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.2764647686050346E-5 0.0 0.0 0.04900076948444542 0.0 2 5.2764647686050346E-5 0.0 0.0 0.16944487193580302 0.0 3 7.035286358140047E-4 0.0 0.0 0.2989644937891613 0.0 4 7.035286358140047E-4 0.0 0.0 0.49983950752995493 0.0 5 7.035286358140047E-4 0.0 0.0 0.8541189403099924 0.0 6 7.035286358140047E-4 0.0 0.0 1.6613652852588765 0.0 7 7.035286358140047E-4 0.0 0.0 2.070607892711883 0.0 8 7.035286358140047E-4 0.0 0.0 2.98901176211938 0.0 9 7.035286358140047E-4 0.0 0.0 3.50819830713422 0.0 10 7.035286358140047E-4 0.0 0.0 4.225164339892272 0.0 11 7.035286358140047E-4 0.0 0.0 4.6616686819830715 0.0 12 7.035286358140047E-4 0.0 0.0 5.052830603495658 0.0 13 7.035286358140047E-4 0.0 0.0 5.272437067165 0.0 14 7.035286358140047E-4 0.0 0.0 5.38224029899967 0.0 15 7.035286358140047E-4 0.0 0.0 5.483108717159503 0.0 16 7.035286358140047E-4 0.0 0.0 5.64448059799934 0.0 17 7.035286358140047E-4 0.0 0.0 5.81174453116412 0.0 18 7.035286358140047E-4 0.0 0.0 6.066439485544685 0.0 19 7.035286358140047E-4 0.0 0.0 6.189381114653182 0.0 20 7.035286358140047E-4 0.0 0.0 6.324564142024843 0.0 21 7.035286358140047E-4 0.0 0.0 6.475471034406947 0.0 22 7.035286358140047E-4 0.0 0.0 6.638355501813785 0.0 23 7.035286358140047E-4 0.0 0.0 6.822293063647356 0.0 24 7.035286358140047E-4 0.0 0.0 6.973727602506321 0.0 25 7.035286358140047E-4 0.0 0.0 7.104196988018028 0.0 26 7.035286358140047E-4 0.0 0.0 7.234982961415851 0.0 27 7.035286358140047E-4 0.0 0.0 7.370412223810047 0.0 28 7.035286358140047E-4 0.0 0.0 7.514899417390349 0.0 29 7.035286358140047E-4 0.0 0.0 7.673070242937232 0.0 30 7.035286358140047E-4 0.0 0.0 7.906694514675167 0.0 31 7.035286358140047E-4 0.0 0.0 8.070950862921842 0.0 32 7.035286358140047E-4 0.0 0.0 8.245285258876553 0.0 33 7.035286358140047E-4 0.0 0.0 8.41372760250632 0.0 34 7.035286358140047E-4 0.0 0.0 8.576418599538309 0.0 35 7.035286358140047E-4 0.0 0.0 8.74980323183467 0.0 36 7.035286358140047E-4 0.0 0.0 8.911157524458613 0.0 37 7.035286358140047E-4 0.0 0.0 9.079423985929427 0.0 38 7.035286358140047E-4 0.0 0.0 9.262763548422557 0.0 39 7.211168517093547E-4 0.0 0.0 9.506993514345389 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 35400 0.0 41.593224 1 CGTAAGG 765 0.0 37.647057 2 GGGCGAT 15790 0.0 37.376507 7 CACGACC 2385 0.0 37.35849 27 AGGGCGA 8125 0.0 36.996925 6 TGGGCGA 4620 0.0 36.915585 6 ACACGAC 2385 0.0 36.60377 26 AGGGTAC 2930 0.0 36.399315 6 TATAGCG 280 0.0 36.160713 1 CGGTCTA 405 0.0 36.11111 31 TACGGGA 1260 0.0 36.07143 4 CGTTCGG 1425 0.0 35.842106 45 GGCGATA 3250 0.0 35.79231 8 CGTTAGG 805 0.0 35.776398 2 ATAGGGC 3110 0.0 35.667202 4 GCGAGAC 2465 0.0 35.59838 21 CGAGACA 2465 0.0 35.59838 22 TAGCATA 3415 0.0 35.512444 30 GCGATAT 825 0.0 35.454548 9 GACACGA 2465 0.0 35.324547 25 >>END_MODULE