SRR1546693_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546693_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1075274
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4689	0.4360748981189911	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3764	0.3500503127574925	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1116	0.10378749974425124	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1112	0.1034155015372826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTGT	20	7.0330827E-4	45.000004	40
ACTAGCA	20	7.0330827E-4	45.000004	14
ACTACGG	20	7.0330827E-4	45.000004	2
TATAGTC	20	7.0330827E-4	45.000004	40
ATACCCG	20	7.0330827E-4	45.000004	11
TCGAAAC	20	7.0330827E-4	45.000004	30
GTTGACG	35	1.211829E-7	45.0	1
CTATACG	25	3.890637E-5	45.0	1
ACGGGTA	135	0.0	45.0	5
CATAGTT	25	3.890637E-5	45.0	36
GTATGCG	55	1.8189894E-12	45.0	1
TACGACG	25	3.890637E-5	45.0	3
CGAATCG	25	3.890637E-5	45.0	2
CTCGATG	35	1.211829E-7	45.0	1
ACGTAGC	25	3.890637E-5	45.0	19
ATACGAG	50	2.1827873E-11	45.0	1
ATACGAC	25	3.890637E-5	45.0	2
AACACGT	55	1.8189894E-12	45.0	41
CACGACA	30	2.1653705E-6	44.999996	16
CGAATAT	115	0.0	44.999996	14