##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546693_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1075274 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33897034616293 31.0 31.0 33.0 30.0 34.0 2 31.731696293223866 31.0 31.0 34.0 30.0 34.0 3 31.843440834615176 31.0 31.0 34.0 30.0 34.0 4 35.60362940050629 37.0 35.0 37.0 33.0 37.0 5 35.50576411221698 37.0 35.0 37.0 33.0 37.0 6 35.56603433171452 37.0 35.0 37.0 33.0 37.0 7 35.93705511339435 37.0 35.0 37.0 35.0 37.0 8 35.91760611713852 37.0 35.0 37.0 35.0 37.0 9 37.642292104152055 39.0 37.0 39.0 35.0 39.0 10 37.13528830791036 39.0 37.0 39.0 33.0 39.0 11 36.819000552417336 39.0 35.0 39.0 32.0 39.0 12 35.854991378941556 37.0 35.0 39.0 32.0 39.0 13 35.475466718250416 37.0 35.0 39.0 31.0 39.0 14 36.394828666925825 38.0 35.0 41.0 31.0 41.0 15 36.7040140466523 38.0 35.0 41.0 32.0 41.0 16 36.86010542429185 38.0 35.0 41.0 32.0 41.0 17 36.80877711169432 38.0 35.0 41.0 32.0 41.0 18 36.72476224664597 38.0 35.0 40.0 32.0 41.0 19 36.63695113989551 37.0 35.0 40.0 32.0 41.0 20 36.46616025310758 37.0 35.0 40.0 31.0 41.0 21 36.34704735723174 37.0 35.0 40.0 31.0 41.0 22 36.208438965324184 37.0 35.0 40.0 31.0 41.0 23 36.153909608155686 37.0 35.0 40.0 31.0 41.0 24 36.01234476049825 36.0 35.0 40.0 31.0 41.0 25 35.9146375714469 36.0 35.0 40.0 31.0 41.0 26 35.7540171156375 36.0 34.0 40.0 30.0 41.0 27 35.65511953232385 36.0 34.0 40.0 30.0 41.0 28 35.59134880969874 36.0 34.0 40.0 30.0 41.0 29 35.66674540628714 36.0 35.0 40.0 30.0 41.0 30 35.630261682138695 36.0 35.0 40.0 30.0 41.0 31 35.49487572469901 36.0 34.0 40.0 30.0 41.0 32 35.28059545752989 36.0 34.0 40.0 29.0 41.0 33 35.119513723943854 36.0 34.0 40.0 29.0 41.0 34 34.95331980499854 36.0 34.0 40.0 27.0 41.0 35 34.81190561661493 35.0 34.0 40.0 27.0 41.0 36 34.616853936764024 35.0 34.0 40.0 25.0 41.0 37 34.54258728472929 35.0 34.0 40.0 25.0 41.0 38 34.487771488941426 35.0 33.0 40.0 26.0 41.0 39 34.4464369081741 35.0 34.0 40.0 25.0 41.0 40 34.25989561730312 35.0 33.0 40.0 24.0 41.0 41 34.240540550594545 35.0 34.0 40.0 24.0 41.0 42 34.14353550815885 35.0 33.0 40.0 24.0 41.0 43 33.98577199857897 35.0 33.0 40.0 23.0 41.0 44 33.795400986167245 35.0 33.0 40.0 23.0 41.0 45 33.65455316505374 35.0 33.0 39.0 23.0 41.0 46 33.61306420503053 35.0 33.0 39.0 23.0 41.0 47 33.589210750004185 35.0 33.0 39.0 23.0 41.0 48 33.524016204241896 35.0 33.0 39.0 23.0 41.0 49 33.47196063514974 35.0 33.0 39.0 23.0 41.0 50 33.320548994953846 35.0 33.0 39.0 23.0 41.0 51 32.9481341499934 35.0 32.0 38.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 0.0 12 2.0 13 6.0 14 8.0 15 31.0 16 95.0 17 281.0 18 528.0 19 1091.0 20 1973.0 21 3135.0 22 4665.0 23 6718.0 24 10070.0 25 13819.0 26 18326.0 27 21303.0 28 23410.0 29 26155.0 30 30719.0 31 36382.0 32 44695.0 33 58407.0 34 106279.0 35 184495.0 36 77087.0 37 89750.0 38 122601.0 39 193080.0 40 158.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.11818755033601 23.147774427727256 28.483995707140693 14.250042314796044 2 29.97840550408547 26.770757964946608 29.935625710284075 13.315210820683845 3 27.846483779948176 25.62509648703493 32.4373136521482 14.09110608086869 4 24.10390281918841 29.24240705159801 31.3606578416292 15.293032287584374 5 23.092718693095897 32.79405993263113 29.937206702663694 14.176014671609282 6 21.06458446870286 41.05586111074945 26.635815615368735 11.243738805178959 7 85.81580136783741 5.192815970627022 7.118278689896715 1.873103971638857 8 86.32385791900484 4.244964539270921 6.667602862154204 2.7635746795700444 9 81.13178594479174 5.7212394236259785 9.637729546143587 3.5092450854386885 10 54.54200510753539 19.049005183795014 13.805690456572 12.603299252097605 11 47.07116511698414 18.890719946729856 19.499588011985782 14.538526924300225 12 40.635131138667916 19.18534252664902 24.588244484661583 15.591281850021483 13 22.13770629625565 37.62808363263689 25.848295411216114 14.385914659891338 14 16.209449870451625 40.37054741396147 28.627308016375363 14.79269469921155 15 14.213028493202662 20.45348441420512 49.950431238921425 15.383055853670784 16 16.14946515957793 16.721412402792218 47.27102115367804 19.85810128395181 17 17.023846945057723 17.347764383775672 29.118066650918745 36.51032202024786 18 22.266603674970288 21.38831590831732 35.02790916547782 21.31717125123457 19 29.67717995599261 23.570364390843636 25.98128477020741 20.771170882956344 20 31.505737142346973 21.54846113641732 24.84882922864312 22.096972492592588 21 23.78435635940235 27.542561244854802 27.493271482431453 21.179810913311396 22 24.058054040179528 23.3009446894466 24.84464424881472 27.796357021559153 23 20.223775521401986 29.132760580094004 23.82499716351367 26.818466734990338 24 21.508006331409483 22.165048164467844 37.24873846108061 19.078207043042053 25 18.472593962097104 23.343910482351475 34.664094919062485 23.519400636488932 26 17.273643741037166 31.491973208689135 28.319200501453583 22.915182548820116 27 18.739409676045362 31.8624834228299 28.007373004462117 21.390733896662617 28 16.871420679752326 27.44825969938825 37.10830913794996 18.572010482909473 29 17.498981654908423 23.541441530251824 35.70736389050605 23.252212924333705 30 20.688029283698853 28.315480519383897 31.541541969767707 19.454948227149547 31 30.120136820940523 25.47648320335096 24.241263157111582 20.162116818596935 32 31.460446360648543 24.83608829005444 25.609751560997474 18.09371378829954 33 29.927162751075542 25.607705570859146 24.451814142255834 20.013317535809477 34 22.392153069822204 25.346004832256707 28.139153369280763 24.12268872864033 35 22.126453350494852 25.01204344195061 31.161545801349238 21.699957406205304 36 31.344010921867355 23.245795955263496 27.24282368958982 18.167369433279333 37 22.855662835705132 30.123670803906727 28.354447331563865 18.666219028824283 38 22.066282640517674 31.365586817871538 24.82725333263894 21.740877208971852 39 22.04796172882447 29.73697866776282 27.037387679791387 21.17767192362133 40 25.341261855117857 24.20499333193214 26.55574300131873 23.898001811631268 41 18.75698659132463 23.133359497207223 27.310806361913336 30.798847549554807 42 24.010345270135797 23.692193803625866 24.106227807981963 28.19123311825637 43 23.69191480497064 23.342515489075343 26.472322403406018 26.493247302548 44 21.603330871945197 28.207880038018217 28.230757927746787 21.9580311622898 45 18.550620586008776 34.690506791757265 24.008950276859668 22.749922345374294 46 23.142845451484924 29.989658449846274 26.887658401486505 19.979837697182298 47 22.813720037869416 26.20336769976769 27.183954973337027 23.798957289025868 48 24.53979171820392 22.51984145436419 30.18244652060777 22.75792030682412 49 23.06565582353893 20.937640080574813 32.12920613722642 23.86749795865984 50 20.587403768713834 30.520313892087042 27.39273896699818 21.499543372200947 51 20.219218543366622 31.176797727834956 24.63623225336054 23.967751475437886 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1570.0 1 1781.5 2 1993.0 3 5465.5 4 8938.0 5 6627.5 6 4317.0 7 4654.5 8 4992.0 9 5567.5 10 6143.0 11 6562.5 12 6982.0 13 6810.5 14 6639.0 15 6201.0 16 5763.0 17 5760.5 18 5758.0 19 5474.5 20 5191.0 21 5389.5 22 5588.0 23 5079.5 24 4571.0 25 4766.0 26 5193.0 27 5425.0 28 6307.5 29 7190.0 30 8075.0 31 8960.0 32 11157.5 33 13355.0 34 16686.5 35 20018.0 36 20894.0 37 21770.0 38 25825.5 39 29881.0 40 44712.0 41 59543.0 42 75851.5 43 92160.0 44 96703.0 45 101246.0 46 100350.0 47 99454.0 48 95795.0 49 92136.0 50 88366.5 51 84597.0 52 76444.0 53 68291.0 54 61127.0 55 53963.0 56 51502.0 57 49041.0 58 46609.0 59 44177.0 60 41240.5 61 38304.0 62 35265.5 63 32227.0 64 29727.0 65 27227.0 66 22828.5 67 18430.0 68 15148.0 69 11866.0 70 10374.0 71 8882.0 72 7337.0 73 5792.0 74 4811.5 75 2774.0 76 1717.0 77 1369.0 78 1021.0 79 861.5 80 702.0 81 565.0 82 428.0 83 263.0 84 98.0 85 90.0 86 82.0 87 56.5 88 31.0 89 21.5 90 12.0 91 9.5 92 7.0 93 4.0 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1075274.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.109506923745478 #Duplication Level Percentage of deduplicated Percentage of total 1 80.97821167436193 19.52344755035556 2 6.550439986917265 3.1585575643632207 3 2.2318208692581396 1.6142430209981629 4 1.123845771961392 1.0838146968130105 5 0.7566603031392584 0.9121353408729651 6 0.5846538936571983 0.8457430258273786 7 0.45482222735160427 0.767587774758479 8 0.3869296132465504 0.7462945751655893 9 0.3249917526420586 0.7051851819435501 >10 4.625647160845189 27.464207473227038 >50 1.4314923072921297 24.188170000464655 >100 0.5473809329744697 17.776313676993006 >500 0.001551753176398213 0.2153060827340729 >1k 0.001551753176398213 0.998994035483333 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4689 0.4360748981189911 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3764 0.3500503127574925 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1116 0.10378749974425124 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1112 0.1034155015372826 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.056822726114460126 0.0 2 0.0 0.0 0.0 0.24365882556446078 0.0 3 0.0 0.0 0.0 0.34447033965296286 0.0 4 0.0 0.0 0.0 0.5431173821742179 0.0 5 0.0 0.0 0.0 0.8359729706102816 0.0 6 0.0 0.0 0.0 1.38513532364774 0.0 7 0.0 0.0 0.0 1.6657149712538386 0.0 8 0.0 0.0 0.0 2.556743676495479 0.0 9 0.0 0.0 0.0 3.087120120081021 0.0 10 0.0 0.0 0.0 3.9478309714547177 0.0 11 0.0 0.0 0.0 4.591108870855242 0.0 12 0.0 0.0 0.0 5.135993244512561 0.0 13 0.0 0.0 0.0 5.399739973253329 0.0 14 0.0 0.0 0.0 5.509665443412563 0.0 15 0.0 0.0 0.0 5.624984887572842 0.0 16 0.0 0.0 0.0 5.85646077185908 0.0 17 0.0 0.0 0.0 6.089889646731903 0.0 18 0.0 0.0 0.0 6.466444831735911 0.0 19 0.0 0.0 0.0 6.616546108247758 0.0 20 0.0 0.0 0.0 6.78059731752093 0.0 21 0.0 0.0 0.0 6.979616358249153 0.0 22 0.0 0.0 0.0 7.161430481905077 0.0 23 0.0 0.0 0.0 7.375515450015531 0.0 24 0.0 0.0 0.0 7.540031657047413 0.0 25 0.0 0.0 0.0 7.67246301872825 0.0 26 0.0 0.0 0.0 7.8048943804090865 0.0 27 0.0 0.0 0.0 7.938813734917797 0.0 28 9.299955174216061E-5 0.0 0.0 8.071338096150377 0.0 29 9.299955174216061E-5 0.0 0.0 8.202560463658566 0.0 30 9.299955174216061E-5 0.0 0.0 8.408182472560481 0.0 31 9.299955174216061E-5 0.0 0.0 8.57418667242024 0.0 32 9.299955174216061E-5 0.0 0.0 8.70550203948017 0.0 33 9.299955174216061E-5 0.0 0.0 8.855789315095501 0.0 34 9.299955174216061E-5 0.0 0.0 8.999194623881912 0.0 35 9.299955174216061E-5 0.0 0.0 9.185100727814492 0.0 36 9.299955174216061E-5 0.0 0.0 9.34385096263836 0.0 37 9.299955174216061E-5 0.0 0.0 9.49627722794376 0.0 38 9.299955174216061E-5 0.0 0.0 9.668326398666759 0.0 39 9.299955174216061E-5 0.0 0.0 9.841584563562403 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGTGT 20 7.0330827E-4 45.000004 40 ACTAGCA 20 7.0330827E-4 45.000004 14 ACTACGG 20 7.0330827E-4 45.000004 2 TATAGTC 20 7.0330827E-4 45.000004 40 ATACCCG 20 7.0330827E-4 45.000004 11 TCGAAAC 20 7.0330827E-4 45.000004 30 GTTGACG 35 1.211829E-7 45.0 1 CTATACG 25 3.890637E-5 45.0 1 ACGGGTA 135 0.0 45.0 5 CATAGTT 25 3.890637E-5 45.0 36 GTATGCG 55 1.8189894E-12 45.0 1 TACGACG 25 3.890637E-5 45.0 3 CGAATCG 25 3.890637E-5 45.0 2 CTCGATG 35 1.211829E-7 45.0 1 ACGTAGC 25 3.890637E-5 45.0 19 ATACGAG 50 2.1827873E-11 45.0 1 ATACGAC 25 3.890637E-5 45.0 2 AACACGT 55 1.8189894E-12 45.0 41 CACGACA 30 2.1653705E-6 44.999996 16 CGAATAT 115 0.0 44.999996 14 >>END_MODULE