SRR1546691_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546691_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	651968
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2876	0.4411259448316482	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1490	0.22853882399136152	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	686	0.10521988809266714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGT	30	2.1640499E-6	45.000004	40
TCGTAAG	30	2.1640499E-6	45.000004	1
CGCAACA	30	2.1640499E-6	45.000004	39
CTTAACG	20	7.031037E-4	45.0	1
CGAACCG	20	7.031037E-4	45.0	45
TCTTACG	20	7.031037E-4	45.0	41
TAACGCC	25	3.888942E-5	45.0	12
CGTTAGC	20	7.031037E-4	45.0	11
TAGCACG	20	7.031037E-4	45.0	1
ACCCGTT	20	7.031037E-4	45.0	19
CCGTTAG	20	7.031037E-4	45.0	10
ATCGCCT	20	7.031037E-4	45.0	14
TACACGG	20	7.031037E-4	45.0	2
CTTACCG	20	7.031037E-4	45.0	1
AAGTCGC	20	7.031037E-4	45.0	22
ATAGGGT	210	0.0	40.714287	4
CACGACC	50	1.0804797E-9	40.5	27
CGTAAGG	50	1.0804797E-9	40.5	2
CGTTTTT	1915	0.0	39.24282	1
GCGCGAC	195	0.0	39.23077	9