FastQCFastQC Report
Thu 26 May 2016
SRR1546691_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546691_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences651968
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28760.4411259448316482No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC14900.22853882399136152No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6860.10521988809266714No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTAGT302.1640499E-645.00000440
TCGTAAG302.1640499E-645.0000041
CGCAACA302.1640499E-645.00000439
CTTAACG207.031037E-445.01
CGAACCG207.031037E-445.045
TCTTACG207.031037E-445.041
TAACGCC253.888942E-545.012
CGTTAGC207.031037E-445.011
TAGCACG207.031037E-445.01
ACCCGTT207.031037E-445.019
CCGTTAG207.031037E-445.010
ATCGCCT207.031037E-445.014
TACACGG207.031037E-445.02
CTTACCG207.031037E-445.01
AAGTCGC207.031037E-445.022
ATAGGGT2100.040.7142874
CACGACC501.0804797E-940.527
CGTAAGG501.0804797E-940.52
CGTTTTT19150.039.242821
GCGCGAC1950.039.230779