SRR1546686_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546686_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1688549
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	9244	0.5474522800345148	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7805	0.46223118192009827	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1835	0.10867318626821015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATCG	20	7.034227E-4	45.000004	17
CCCTATA	20	7.034227E-4	45.000004	44
ACGTTAC	30	2.166109E-6	45.000004	39
GTTTACG	20	7.034227E-4	45.000004	1
TACGGAC	20	7.034227E-4	45.000004	41
TCGATAG	35	1.2123746E-7	45.000004	1
CGTTATG	20	7.034227E-4	45.000004	13
ATCGTAG	40	6.8175723E-9	45.000004	1
TACGATT	20	7.034227E-4	45.000004	23
ACTACGG	35	1.2123746E-7	45.000004	2
ACTAACG	40	6.8175723E-9	45.000004	1
ACGCTCG	20	7.034227E-4	45.000004	42
CCGGTTA	20	7.034227E-4	45.000004	21
ATAACCG	20	7.034227E-4	45.000004	1
ATACGTT	20	7.034227E-4	45.000004	30
ATCGCGA	20	7.034227E-4	45.000004	20
TCCGCTA	25	3.8915856E-5	45.0	23
TGTATCG	25	3.8915856E-5	45.0	13
CACTAGT	25	3.8915856E-5	45.0	36
ACGGATA	25	3.8915856E-5	45.0	34