##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546686_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1688549 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.332540542205173 31.0 31.0 33.0 30.0 34.0 2 31.72612284274842 31.0 31.0 34.0 30.0 34.0 3 31.825499289626773 31.0 31.0 34.0 30.0 34.0 4 35.56382669380634 37.0 35.0 37.0 33.0 37.0 5 35.45918418713345 37.0 35.0 37.0 33.0 37.0 6 35.53030382890873 37.0 35.0 37.0 33.0 37.0 7 35.93024247445588 37.0 35.0 37.0 35.0 37.0 8 35.91541376649419 37.0 35.0 37.0 35.0 37.0 9 37.64621577460885 39.0 37.0 39.0 35.0 39.0 10 37.11491819307583 39.0 37.0 39.0 33.0 39.0 11 36.76651847236888 39.0 35.0 39.0 32.0 39.0 12 35.62118303940247 37.0 35.0 39.0 31.0 39.0 13 35.10182055717661 37.0 35.0 39.0 30.0 39.0 14 35.98536850277961 38.0 35.0 40.0 30.0 41.0 15 36.40136057644759 37.0 35.0 40.0 31.0 41.0 16 36.61667739579959 37.0 35.0 40.0 32.0 41.0 17 36.587733018112 37.0 35.0 40.0 32.0 41.0 18 36.513656399666225 37.0 35.0 40.0 32.0 41.0 19 36.435838699380355 37.0 35.0 40.0 32.0 41.0 20 36.22499968908217 36.0 35.0 40.0 31.0 41.0 21 36.0575802064376 36.0 35.0 40.0 31.0 41.0 22 35.93563349360901 36.0 35.0 40.0 31.0 41.0 23 35.91733671927791 35.0 35.0 40.0 31.0 41.0 24 35.79477172412527 35.0 35.0 40.0 31.0 41.0 25 35.69608048093363 35.0 34.0 40.0 31.0 41.0 26 35.53207398778478 35.0 34.0 40.0 30.0 41.0 27 35.460707980639 35.0 34.0 40.0 30.0 41.0 28 35.46558435674653 36.0 34.0 40.0 30.0 41.0 29 35.51618934363172 36.0 34.0 40.0 30.0 41.0 30 35.513503013534105 36.0 35.0 40.0 30.0 41.0 31 35.340251304522404 35.0 34.0 40.0 30.0 41.0 32 35.11757550417548 35.0 34.0 40.0 29.0 41.0 33 34.939146569036495 35.0 34.0 40.0 29.0 41.0 34 34.812131599379114 35.0 34.0 40.0 27.0 41.0 35 34.68121742395394 35.0 34.0 40.0 27.0 41.0 36 34.46032540364538 35.0 34.0 40.0 25.0 41.0 37 34.377972448534216 35.0 34.0 40.0 25.0 41.0 38 34.36764583082872 35.0 33.0 40.0 26.0 41.0 39 34.33889214941349 35.0 34.0 40.0 25.0 41.0 40 34.126230864487795 35.0 33.0 40.0 23.0 41.0 41 34.13459188924929 35.0 34.0 40.0 23.0 41.0 42 34.05543753838355 35.0 33.0 40.0 23.0 41.0 43 33.90757863704281 35.0 33.0 40.0 23.0 41.0 44 33.78051332830732 35.0 33.0 39.0 23.0 41.0 45 33.69020679885511 35.0 33.0 39.0 23.0 41.0 46 33.682610928080855 35.0 33.0 39.0 23.0 41.0 47 33.65551665956984 35.0 33.0 39.0 23.0 41.0 48 33.62354009270682 35.0 33.0 39.0 23.0 41.0 49 33.606499426430624 35.0 33.0 39.0 24.0 41.0 50 33.4429430238625 35.0 33.0 39.0 23.0 41.0 51 33.0236972690754 35.0 32.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 8.0 12 3.0 13 11.0 14 17.0 15 47.0 16 155.0 17 425.0 18 965.0 19 1919.0 20 3293.0 21 5151.0 22 7882.0 23 11446.0 24 16470.0 25 22984.0 26 29687.0 27 34211.0 28 36662.0 29 40394.0 30 47262.0 31 57307.0 32 70759.0 33 93900.0 34 175704.0 35 332641.0 36 104494.0 37 119107.0 38 170945.0 39 304385.0 40 312.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.60308110691487 23.69732829784626 29.33169247679517 14.367898118443707 2 29.772485133685784 26.930636895938463 30.361926127106763 12.934951843268985 3 28.198411772474476 26.176912840551264 31.895136001383435 13.729539385590824 4 24.156657579969547 29.23178421236221 31.935525708759414 14.676032498908825 5 23.18416581336994 31.945652746825825 30.97843177781634 13.891749661987895 6 20.86400809215486 40.87924010496587 27.893238514250996 10.363513288628285 7 85.21979522063026 5.437331104990142 7.531969756281873 1.8109039180977275 8 86.14011201333216 4.387613270328548 6.671526855305947 2.800747861033349 9 81.61782690345379 5.5371801469782636 9.312374115290702 3.5326188342772404 10 55.32637785459586 21.262693590769352 12.89444369100334 10.516484863631437 11 50.77916009544289 18.602717481103596 19.404826273919205 11.213296149534305 12 45.84285087373834 20.37897626897413 21.252033550699448 12.526139306588083 13 20.94016815620986 45.205676589782115 21.662445093390833 12.191710160617193 14 13.412047858842119 48.08909898380207 25.200275502813362 13.29857765454245 15 11.403873977006294 23.383094005563358 52.583786434388344 12.629245583042009 16 12.216228252777976 16.853404905631994 51.60501708863645 19.32534975295357 17 13.703363064974722 18.664190378840058 28.515784854333514 39.116661701851704 18 19.847277159265143 23.011591609127127 35.835086811220755 21.30604442038697 19 29.298527907688793 25.283068480689636 25.319549506706647 20.098854104914928 20 32.42938167622023 22.157603954637974 24.186742581944618 21.226271787197174 21 20.085292165048216 30.545574928533313 27.904905335883058 21.464227570535414 22 21.387652949366586 25.567750773000963 24.167080730260125 28.87751554737233 23 17.732443654285422 33.11713192806368 22.433698992448544 26.71672542520235 24 19.544117464165982 22.963147649253887 40.46065586488755 17.03207902169259 25 14.642927152247283 25.64770107352526 37.623190088057854 22.086181686169603 26 14.553027480991076 37.04144801246514 27.95595508332894 20.449569423214843 27 16.17311668183748 37.51783335870028 27.85504003733383 18.454009922128407 28 13.026213630756347 30.32005585860997 40.05083654664448 16.602893963989203 29 13.685063329521382 23.983076594164576 40.19143063067758 22.14042944563646 30 17.469436776782906 32.85750072991663 32.173363047207985 17.499699446092475 31 29.31866353893195 28.174722794541353 23.862558918929803 18.644054747596904 32 31.07046345708653 27.511668302193186 24.85820666145904 16.55966157926125 33 29.175522889771038 28.337584517831583 23.109427087990934 19.377465504406448 34 19.389073103593677 28.60142050956176 26.930400006159132 25.079106380685428 35 19.480867893084536 26.170398371619658 31.44220274330209 22.90653099199372 36 32.24194263832438 24.152630453720917 26.409360936520056 17.196065971434646 37 19.6594827867003 32.66745590444814 29.251742176270866 18.421319132580695 38 19.62649588492842 33.44575727444096 24.137232618064385 22.790514222566237 39 20.311225792085395 32.67290436937276 26.432576134894514 20.583293703647332 40 25.6694357107789 25.661855237840296 25.61098315772891 23.057725893651888 41 17.451196263774403 23.505566021477613 27.614300799088447 31.428936915659538 42 23.10279417416966 24.076825724334917 23.939725764546957 28.88065433694847 43 23.408381989506967 24.934840505072696 25.729605714729036 25.9271717906913 44 18.681601777620905 31.074431360890326 28.671066104685146 21.572900756803623 45 16.008537507647098 40.345290542353226 21.63431443209525 22.011857517904428 46 22.559369020383773 34.99815522084346 24.54669660163845 17.89577915713432 47 21.60488087701334 28.009965953016465 26.054559269526678 24.330593900443517 48 24.124144457756334 23.32067354870957 31.519369588919243 21.035812404614852 49 21.44989573888587 22.825159352793435 33.07437332289439 22.650571585426306 50 18.532775773756047 33.99919102140358 26.902920791756706 20.565112413083657 51 18.00338633939554 34.777137056727405 23.807067488121458 23.412409115755597 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2362.0 1 2696.0 2 3030.0 3 7947.5 4 12865.0 5 9682.0 6 6499.0 7 7291.5 8 8084.0 9 9062.0 10 10040.0 11 10585.0 12 11130.0 13 10908.0 14 10686.0 15 10331.5 16 9977.0 17 9528.5 18 9080.0 19 8891.5 20 8703.0 21 8325.0 22 7947.0 23 7773.5 24 7600.0 25 7389.0 26 8954.5 27 10731.0 28 13381.5 29 16032.0 30 16771.0 31 17510.0 32 19611.5 33 21713.0 34 29635.5 35 37558.0 36 37388.5 37 37219.0 38 53063.0 39 68907.0 40 99433.5 41 129960.0 42 155874.5 43 181789.0 44 181784.5 45 181780.0 46 176355.5 47 170931.0 48 162959.5 49 154988.0 50 151573.0 51 148158.0 52 128610.0 53 109062.0 54 91385.0 55 73708.0 56 62715.5 57 51723.0 58 45442.5 59 39162.0 60 36664.0 61 34166.0 62 31055.0 63 27944.0 64 24724.5 65 21505.0 66 17426.0 67 13347.0 68 10995.5 69 8644.0 70 7873.5 71 7103.0 72 5660.5 73 4218.0 74 3431.5 75 2123.0 76 1601.0 77 1133.5 78 666.0 79 515.0 80 364.0 81 257.5 82 151.0 83 103.0 84 55.0 85 34.0 86 13.0 87 10.5 88 8.0 89 6.0 90 4.0 91 3.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1688549.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.154778081015994 #Duplication Level Percentage of deduplicated Percentage of total 1 81.42412638013323 17.225093240123186 2 7.595077860012148 3.2134437327318963 3 2.5749332091468022 1.6341642183881682 4 1.2676011166059844 1.0726328126819071 5 0.7841818533024298 0.8294596540886372 6 0.5588326235750792 0.7093188081697648 7 0.38400946835231947 0.5686544558801576 8 0.3188666801965488 0.539644308559063 9 0.26644851516214485 0.5072993287444258 >10 2.7136547502899195 13.121894616608913 >50 0.9850673134978973 15.20044737723549 >100 1.113381662986358 42.2386950252281 >500 0.010434427945876111 1.4257288933950611 >1k 0.002820115661047598 0.6963985845091869 >5k 5.640231322095196E-4 1.0171249436560548 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 9244 0.5474522800345148 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7805 0.46223118192009827 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1835 0.10867318626821015 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.9222444832812075E-5 0.0 0.0 0.07349505403751978 0.0 2 5.9222444832812075E-5 0.0 0.0 0.2579137472468966 0.0 3 5.9222444832812075E-5 0.0 0.0 0.38364299762695664 0.0 4 1.1844488966562415E-4 0.0 0.0 0.6969889532373653 0.0 5 1.1844488966562415E-4 0.0 0.0 1.1580356862608074 0.0 6 1.1844488966562415E-4 0.0 0.0 1.931540038222166 0.0 7 1.1844488966562415E-4 0.0 0.0 2.317255821418271 0.0 8 1.1844488966562415E-4 0.0 0.0 3.326050946700392 0.0 9 1.1844488966562415E-4 0.0 0.0 3.844602673656494 0.0 10 1.1844488966562415E-4 0.0 0.0 4.692194304103701 0.0 11 1.1844488966562415E-4 0.0 0.0 5.258656988929548 0.0 12 1.1844488966562415E-4 0.0 0.0 5.807826719864215 0.0 13 1.1844488966562415E-4 0.0 0.0 6.045782503202454 0.0 14 1.1844488966562415E-4 0.0 0.0 6.14426942895942 0.0 15 1.1844488966562415E-4 0.0 0.0 6.249803825651491 0.0 16 1.1844488966562415E-4 0.0 0.0 6.449679576962232 0.0 17 1.1844488966562415E-4 0.0 0.0 6.656958133877074 0.0 18 1.1844488966562415E-4 0.0 0.0 7.005541444163006 0.0 19 1.1844488966562415E-4 0.0 0.0 7.13470559634337 0.0 20 1.1844488966562415E-4 0.0 0.0 7.281399592194245 0.0 21 1.1844488966562415E-4 0.0 0.0 7.459066926692681 0.0 22 1.1844488966562415E-4 0.0 0.0 7.636615816301452 0.0 23 1.1844488966562415E-4 0.0 0.0 7.841407030533316 0.0 24 1.1844488966562415E-4 0.0 0.0 7.993312601529479 0.0 25 1.1844488966562415E-4 0.0 0.0 8.110099262739784 0.0 26 1.1844488966562415E-4 0.0 0.0 8.23239361131954 0.0 27 1.1844488966562415E-4 0.0 0.0 8.358892753482428 0.0 28 1.1844488966562415E-4 0.0 0.0 8.474080408682248 0.0 29 1.1844488966562415E-4 0.0 0.0 8.609107582901059 0.0 30 1.1844488966562415E-4 0.0 0.0 8.841318789090515 0.0 31 1.1844488966562415E-4 0.0 0.0 9.00044949835628 0.0 32 1.1844488966562415E-4 0.0 0.0 9.131804880995459 0.0 33 1.1844488966562415E-4 0.0 0.0 9.26428549008646 0.0 34 1.1844488966562415E-4 0.0 0.0 9.403872792557397 0.0 35 1.1844488966562415E-4 0.0 0.0 9.598418523833185 0.0 36 1.1844488966562415E-4 0.0 0.0 9.746829970584212 0.0 37 1.1844488966562415E-4 0.0 0.0 9.893346299100589 0.0 38 1.7766733449843622E-4 0.0 0.0 10.039862627616966 0.0 39 1.7766733449843622E-4 0.0 0.0 10.182470274774378 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATATCG 20 7.034227E-4 45.000004 17 CCCTATA 20 7.034227E-4 45.000004 44 ACGTTAC 30 2.166109E-6 45.000004 39 GTTTACG 20 7.034227E-4 45.000004 1 TACGGAC 20 7.034227E-4 45.000004 41 TCGATAG 35 1.2123746E-7 45.000004 1 CGTTATG 20 7.034227E-4 45.000004 13 ATCGTAG 40 6.8175723E-9 45.000004 1 TACGATT 20 7.034227E-4 45.000004 23 ACTACGG 35 1.2123746E-7 45.000004 2 ACTAACG 40 6.8175723E-9 45.000004 1 ACGCTCG 20 7.034227E-4 45.000004 42 CCGGTTA 20 7.034227E-4 45.000004 21 ATAACCG 20 7.034227E-4 45.000004 1 ATACGTT 20 7.034227E-4 45.000004 30 ATCGCGA 20 7.034227E-4 45.000004 20 TCCGCTA 25 3.8915856E-5 45.0 23 TGTATCG 25 3.8915856E-5 45.0 13 CACTAGT 25 3.8915856E-5 45.0 36 ACGGATA 25 3.8915856E-5 45.0 34 >>END_MODULE