SRR1546682_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546682_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2591095
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12288	0.4742396554352503	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10296	0.39736096129242654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAC	30	2.16656E-6	45.000004	29
ACGTTAC	45	3.8562575E-10	45.0	39
CCTACGT	20	7.034927E-4	45.0	29
GCGATCG	35	1.2127202E-7	45.0	9
CGTAATC	20	7.034927E-4	45.0	35
ACGTATA	20	7.034927E-4	45.0	10
TACGTAA	25	3.892165E-5	45.0	10
TACGTCA	65	0.0	44.999996	38
GTTACAC	135	0.0	43.333332	33
GCGTAAG	270	0.0	43.333332	1
CGAATAT	210	0.0	42.857143	14
GTCAACG	145	0.0	41.89655	1
CGTTTTT	8220	0.0	41.687958	1
TAACGTT	55	6.184564E-11	40.909092	36
TCGATTG	110	0.0	40.909092	1
TATTACG	50	1.0822987E-9	40.5	1
CGTACCG	50	1.0822987E-9	40.5	34
CGACGGT	340	0.0	40.367645	28
ATCGTAC	45	1.9299478E-8	40.0	28
TACGCGC	45	1.9299478E-8	40.0	34