##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546682_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2591095 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.333430460866932 31.0 31.0 33.0 30.0 34.0 2 31.72800649918278 31.0 31.0 34.0 30.0 34.0 3 31.85894534936002 31.0 31.0 34.0 30.0 34.0 4 35.607724533450146 37.0 35.0 37.0 33.0 37.0 5 35.49845914565078 37.0 35.0 37.0 33.0 37.0 6 35.571773323633444 37.0 35.0 37.0 33.0 37.0 7 35.955030595173085 37.0 35.0 37.0 35.0 37.0 8 35.94317884909662 37.0 35.0 37.0 35.0 37.0 9 37.675419079578326 39.0 37.0 39.0 35.0 39.0 10 37.069819516459255 39.0 37.0 39.0 33.0 39.0 11 36.806613034257715 39.0 35.0 39.0 32.0 39.0 12 35.98085056703826 37.0 35.0 39.0 32.0 39.0 13 35.61069161879437 37.0 35.0 39.0 31.0 39.0 14 36.56768624847796 38.0 35.0 41.0 31.0 41.0 15 36.87251914731031 38.0 35.0 41.0 32.0 41.0 16 37.02753700655514 38.0 35.0 41.0 32.0 41.0 17 36.98035386583665 38.0 35.0 41.0 32.0 41.0 18 36.918772565266806 38.0 35.0 41.0 32.0 41.0 19 36.849944135587464 38.0 35.0 41.0 32.0 41.0 20 36.68763167695511 38.0 35.0 41.0 32.0 41.0 21 36.54270993537481 38.0 35.0 40.0 31.0 41.0 22 36.431040158697385 38.0 35.0 40.0 31.0 41.0 23 36.394178908916885 38.0 35.0 40.0 31.0 41.0 24 36.26899476862099 37.0 35.0 40.0 31.0 41.0 25 36.17105509446778 37.0 35.0 40.0 31.0 41.0 26 36.02033927740975 37.0 35.0 40.0 31.0 41.0 27 35.93184078545943 37.0 35.0 40.0 30.0 41.0 28 35.887125327323005 37.0 35.0 40.0 30.0 41.0 29 35.95516374351384 37.0 35.0 40.0 30.0 41.0 30 35.959991818130945 37.0 35.0 40.0 30.0 41.0 31 35.85514078024928 37.0 35.0 40.0 30.0 41.0 32 35.70042510984738 37.0 34.0 40.0 30.0 41.0 33 35.583888664830894 37.0 34.0 40.0 30.0 41.0 34 35.47048757378637 37.0 34.0 40.0 29.0 41.0 35 35.403088269631176 37.0 34.0 40.0 29.0 41.0 36 35.24825141494233 37.0 34.0 40.0 28.0 41.0 37 35.187501423143495 37.0 34.0 40.0 28.0 41.0 38 35.15291797483303 36.0 34.0 40.0 28.0 41.0 39 35.11077208670466 36.0 34.0 40.0 27.0 41.0 40 34.964149519797616 36.0 34.0 40.0 27.0 41.0 41 34.94121828802109 36.0 34.0 40.0 27.0 41.0 42 34.87481856126464 36.0 34.0 40.0 27.0 41.0 43 34.75621696618611 36.0 34.0 40.0 27.0 41.0 44 34.610707828157594 35.0 34.0 40.0 26.0 41.0 45 34.49146789291786 35.0 34.0 40.0 26.0 41.0 46 34.47504780797308 35.0 34.0 40.0 26.0 41.0 47 34.4460623790328 35.0 34.0 40.0 26.0 41.0 48 34.39860213539064 35.0 34.0 40.0 26.0 41.0 49 34.36406306986043 36.0 34.0 40.0 26.0 41.0 50 34.23173368788099 35.0 34.0 40.0 25.0 41.0 51 33.84591803851268 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 0.0 12 3.0 13 9.0 14 22.0 15 75.0 16 200.0 17 519.0 18 1142.0 19 2279.0 20 3864.0 21 6206.0 22 9314.0 23 13845.0 24 20233.0 25 28990.0 26 38003.0 27 45320.0 28 50544.0 29 56922.0 30 67151.0 31 81647.0 32 102248.0 33 132717.0 34 236052.0 35 415166.0 36 178635.0 37 211689.0 38 311146.0 39 576711.0 40 440.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.55982509325208 24.950339528268938 28.656841991513243 13.832993386965741 2 29.11163041108103 27.078281575936042 29.67332344047594 14.13676457250699 3 28.56413987136712 25.5585765863467 31.647083568915846 14.23019997337033 4 25.565021737913895 28.85015794480712 30.70192331813384 14.882896999145148 5 21.946667335624515 33.55789733684021 30.20394852369365 14.291486803841618 6 21.100345606780145 40.805952695674996 27.19058930683746 10.903112390707403 7 86.60936785413116 4.891715664612837 6.769994924925562 1.7289215563304317 8 87.37495151663678 3.559537570023484 6.194987061454714 2.8705238518850136 9 82.22234229157944 5.2779616339810005 9.08025371512816 3.419442359311411 10 48.99492299587626 21.735675457673302 16.46601147391354 12.8033900725369 11 44.41346226209383 21.089577958353516 20.92640370190981 13.57055607764285 12 39.23993523973455 21.320792946611373 24.234503173368786 15.204768640285286 13 21.479528925029765 38.90420845241105 25.629203097532127 13.987059525027066 14 16.01265102205824 41.23206597982706 27.879757399863763 14.875525598250933 15 14.26775166483668 23.974034143865815 47.43214741258039 14.326066778717106 16 16.41919728917697 19.249931013721998 45.645914179140476 18.684957517960555 17 16.508194412014998 20.002238435873636 29.70720872835616 33.78235842375521 18 21.282623755593676 22.739343790945526 34.770705049409614 21.20732740405118 19 27.600068696825087 25.447233698494266 26.563286950111824 20.38941065456882 20 30.14601934703282 22.78747016222871 25.926953662447726 21.139556828290743 21 22.068739278181617 27.90260488326364 28.59771640947167 21.43093942908307 22 22.8454379326115 23.953116346563906 26.649273762637034 26.55217195818756 23 19.181195594912577 29.327176348223432 25.40474201061713 26.086886046246853 24 20.369766450091564 22.93335443123467 37.847126407947215 18.84975271072655 25 17.280030257478014 24.65675708532493 35.65589065626695 22.407322000930108 26 16.516106125016645 33.2574066176655 28.30691271450873 21.91957454280912 27 17.85168046713841 33.28473097281265 29.3846038064988 19.47898475355014 28 15.700582186295756 28.562055810381327 37.058772449485645 18.678589553837277 29 16.160079039942573 24.736105777673146 36.44277805329407 22.66103712909021 30 18.912969227295797 30.896590051696293 30.545387181867124 19.64505353914079 31 27.912793625860882 26.953508072841792 25.681574778230825 19.452123523066504 32 28.483401805028375 27.043238476397047 26.24299765157202 18.230362067002563 33 26.94683135894284 27.62341789861043 24.86022318749409 20.569527554952636 34 18.990504014711927 29.03753046491927 28.16751219079192 23.804453329576877 35 19.927289427828775 26.89909092487925 30.45866708862469 22.71495255866728 36 28.450172610421465 24.801097605452522 28.00584308950463 18.742886694621387 37 20.144263332683675 31.725197262161366 29.215949241536883 18.914590163618083 38 19.98201532556699 32.50289935336219 25.716965221267458 21.798120099803363 39 20.82312690194686 30.313593287779877 28.260523060713716 20.60275674955955 40 23.80638301567484 26.15855458792518 27.016415839635364 23.01864655676461 41 17.846740470727624 23.752621960985607 30.05104019729111 28.34959737099566 42 22.885189466229527 24.52773827281516 26.499684496322985 26.087387764632325 43 23.224544063417206 24.349821214583024 27.441255530962778 24.984379191036993 44 19.74914080726488 29.82947363952306 29.059374511548206 21.362011041663852 45 17.641537651070298 35.47955594063514 25.321495352351032 21.55741105594353 46 22.828804038447064 31.365040648837656 26.580885687325246 19.225269625390037 47 21.01640426151878 28.578033611272453 27.32613045835834 23.07943166885043 48 23.26383247237172 25.051725235855884 30.49340143838802 21.19104085338438 49 21.95164592575726 23.613105656102924 31.57981471154087 22.855433706598948 50 20.10852554614941 30.357898880589097 28.824647494592053 20.70892807866944 51 18.79514259415421 32.21375518844349 25.54070769307957 23.45039452432273 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3106.0 1 3918.5 2 4731.0 3 12795.0 4 20859.0 5 14866.5 6 8874.0 7 9733.5 8 10593.0 9 11549.0 10 12505.0 11 12853.0 12 13201.0 13 12951.0 14 12701.0 15 12662.0 16 12623.0 17 12102.0 18 11581.0 19 11267.5 20 10954.0 21 11876.0 22 12798.0 23 11864.0 24 10930.0 25 13037.0 26 17163.5 27 19183.0 28 22312.5 29 25442.0 30 32721.0 31 40000.0 32 42943.0 33 45886.0 34 54887.0 35 63888.0 36 66431.0 37 68974.0 38 80792.5 39 92611.0 40 137363.5 41 182116.0 42 213575.5 43 245035.0 44 258893.0 45 272751.0 46 266277.5 47 259804.0 48 253611.0 49 247418.0 50 226405.5 51 205393.0 52 183269.0 53 161145.0 54 139882.0 55 118619.0 56 109130.0 57 99641.0 58 88013.5 59 76386.0 60 69240.5 61 62095.0 62 53984.5 63 45874.0 64 40061.5 65 34249.0 66 28479.5 67 22710.0 68 18956.0 69 15202.0 70 12604.0 71 10006.0 72 8162.0 73 6318.0 74 5181.0 75 3393.5 76 2743.0 77 2141.0 78 1539.0 79 1253.0 80 967.0 81 610.0 82 253.0 83 185.5 84 118.0 85 86.5 86 55.0 87 37.0 88 19.0 89 12.0 90 5.0 91 3.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2591095.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.024469697881415 #Duplication Level Percentage of deduplicated Percentage of total 1 80.55463980804639 15.325093040519306 2 8.303370945348352 3.1593445788009737 3 2.710939430774647 1.5472255516069247 4 1.3017469838470415 0.9906018419402627 5 0.7804455865008265 0.7423781705615131 6 0.5323776803276006 0.6076921828332501 7 0.4015215964226365 0.5347114810931194 8 0.29014856311722637 0.44159380375260043 9 0.22855496771420283 0.39133233518212046 >10 2.53952636899919 11.258843499675868 >50 0.9774363270943177 13.527502272703554 >100 1.3675958735035325 48.9425976885584 >500 0.00923358024009244 1.0855252461556428 >1k 0.0020519067200205424 0.5639594084871465 >5k 0.0 0.0 >10k+ 4.1038134400410854E-4 0.8815988981292806 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12288 0.4742396554352503 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 10296 0.39736096129242654 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.057543239441240096 0.0 2 0.0 0.0 0.0 0.22824327166699793 0.0 3 0.0 0.0 0.0 0.33881428508024597 0.0 4 0.0 0.0 0.0 0.6120964302736874 0.0 5 0.0 0.0 0.0 1.0181023852849858 0.0 6 0.0 0.0 0.0 1.669101287293596 0.0 7 0.0 0.0 0.0 2.0031299508508953 0.0 8 0.0 0.0 0.0 2.969169405212854 0.0 9 0.0 0.0 0.0 3.3778769207612998 0.0 10 3.859372195924889E-5 0.0 0.0 4.024862075686148 0.0 11 3.859372195924889E-5 0.0 0.0 4.518051248603389 0.0 12 3.859372195924889E-5 0.0 0.0 4.957093429611805 0.0 13 3.859372195924889E-5 0.0 0.0 5.14693594792935 0.0 14 3.859372195924889E-5 0.0 0.0 5.222077924584008 0.0 15 3.859372195924889E-5 0.0 0.0 5.316246606164575 0.0 16 3.859372195924889E-5 0.0 0.0 5.528164733442811 0.0 17 3.859372195924889E-5 0.0 0.0 5.754516912733806 0.0 18 3.859372195924889E-5 0.0 0.0 6.107610874938974 0.0 19 3.859372195924889E-5 0.0 0.0 6.238134842605153 0.0 20 3.859372195924889E-5 0.0 0.0 6.385061142104014 0.0 21 3.859372195924889E-5 0.0 0.0 6.574942254143519 0.0 22 3.859372195924889E-5 0.0 0.0 6.763511179636408 0.0 23 3.859372195924889E-5 0.0 0.0 6.988666953546667 0.0 24 3.859372195924889E-5 0.0 0.0 7.158170580391688 0.0 25 3.859372195924889E-5 0.0 0.0 7.299925321148009 0.0 26 3.859372195924889E-5 0.0 0.0 7.44376412289013 0.0 27 3.859372195924889E-5 0.0 0.0 7.5782246501961525 0.0 28 3.859372195924889E-5 0.0 0.0 7.711565959565357 0.0 29 3.859372195924889E-5 0.0 0.0 7.859881633054751 0.0 30 3.859372195924889E-5 0.0 0.0 8.072726009660009 0.0 31 3.859372195924889E-5 0.0 0.0 8.254155096590438 0.0 32 3.859372195924889E-5 0.0 0.0 8.413431387116258 0.0 33 3.859372195924889E-5 0.0 0.0 8.571395491095464 0.0 34 3.859372195924889E-5 0.0 0.0 8.741053492828321 0.0 35 7.718744391849778E-5 0.0 0.0 8.95235412055521 0.0 36 7.718744391849778E-5 0.0 0.0 9.1265275877573 3.859372195924889E-5 37 7.718744391849778E-5 0.0 0.0 9.309037298902588 3.859372195924889E-5 38 7.718744391849778E-5 0.0 0.0 9.480817955343204 3.859372195924889E-5 39 1.1578116587774667E-4 0.0 0.0 9.665604696084088 3.859372195924889E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCGTAC 30 2.16656E-6 45.000004 29 ACGTTAC 45 3.8562575E-10 45.0 39 CCTACGT 20 7.034927E-4 45.0 29 GCGATCG 35 1.2127202E-7 45.0 9 CGTAATC 20 7.034927E-4 45.0 35 ACGTATA 20 7.034927E-4 45.0 10 TACGTAA 25 3.892165E-5 45.0 10 TACGTCA 65 0.0 44.999996 38 GTTACAC 135 0.0 43.333332 33 GCGTAAG 270 0.0 43.333332 1 CGAATAT 210 0.0 42.857143 14 GTCAACG 145 0.0 41.89655 1 CGTTTTT 8220 0.0 41.687958 1 TAACGTT 55 6.184564E-11 40.909092 36 TCGATTG 110 0.0 40.909092 1 TATTACG 50 1.0822987E-9 40.5 1 CGTACCG 50 1.0822987E-9 40.5 34 CGACGGT 340 0.0 40.367645 28 ATCGTAC 45 1.9299478E-8 40.0 28 TACGCGC 45 1.9299478E-8 40.0 34 >>END_MODULE