SRR1546678_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546678_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1487414
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6394	0.4298735926917456	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5513	0.3706432775273058	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1516	0.10192185901168066	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGATC	20	7.0339575E-4	45.0	44
CAACGAA	35	1.2122473E-7	45.0	17
CTATCCG	40	6.8175723E-9	45.0	29
CCGTGTA	20	7.0339575E-4	45.0	34
ATCCGTA	40	6.8175723E-9	45.0	35
CTAACGG	35	1.2122473E-7	45.0	2
CTACGAT	20	7.0339575E-4	45.0	21
ACGGATA	20	7.0339575E-4	45.0	9
GTACTAA	20	7.0339575E-4	45.0	23
CGTACAA	20	7.0339575E-4	45.0	31
CGTCGAA	25	3.8913604E-5	45.0	29
CCAACGC	40	6.8175723E-9	45.0	20
CCGTTGA	20	7.0339575E-4	45.0	32
TAATCCG	25	3.8913604E-5	45.0	1
ACGTTAG	30	2.1659343E-6	44.999996	1
TGTAGCG	105	0.0	42.857147	1
TGATTCG	100	0.0	42.75	15
TCGTTAG	95	0.0	42.63158	1
CGTTAGG	285	0.0	41.05263	2
TCGATAG	55	6.184564E-11	40.90909	1