SRR1546675_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546675_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	420380
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2265	0.5387982301727009	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1560	0.37109282078119793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGATTA	35	1.2094642E-7	45.000004	44
TAACCGG	35	1.2094642E-7	45.000004	2
AGTTATA	35	1.2094642E-7	45.000004	20
GGGTTGA	35	1.2094642E-7	45.000004	7
CGCACAG	35	1.2094642E-7	45.000004	28
TATCGAG	35	1.2094642E-7	45.000004	1
TAATCAC	20	7.028176E-4	45.0	25
TGATCGA	20	7.028176E-4	45.0	15
GTTGACG	20	7.028176E-4	45.0	1
TATCACG	25	3.88657E-5	45.0	1
AATCACG	20	7.028176E-4	45.0	1
CGAGTCG	20	7.028176E-4	45.0	16
CGAGTCA	20	7.028176E-4	45.0	11
CACGGCA	20	7.028176E-4	45.0	40
CGAAACG	20	7.028176E-4	45.0	40
CCCTAAA	20	7.028176E-4	45.0	30
AGCTTAG	25	3.88657E-5	45.0	1
TAAACGC	20	7.028176E-4	45.0	35
GTGATAG	40	6.7975634E-9	45.0	1
CTAAGCG	25	3.88657E-5	45.0	1