##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546675_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 420380 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.423240877301488 31.0 31.0 33.0 30.0 34.0 2 31.827689233550597 31.0 31.0 34.0 30.0 34.0 3 31.94195727674961 31.0 31.0 34.0 30.0 34.0 4 35.67804367477044 37.0 35.0 37.0 33.0 37.0 5 35.58134069175508 37.0 35.0 37.0 33.0 37.0 6 35.6546124934583 37.0 35.0 37.0 33.0 37.0 7 35.98498501355916 37.0 35.0 37.0 35.0 37.0 8 35.97737523193301 37.0 35.0 37.0 35.0 37.0 9 37.717833864598695 39.0 38.0 39.0 35.0 39.0 10 37.2276392787478 39.0 37.0 39.0 34.0 39.0 11 36.911732242257 39.0 37.0 39.0 33.0 39.0 12 35.750299728816785 37.0 35.0 39.0 32.0 39.0 13 35.264263285598744 37.0 35.0 39.0 30.0 39.0 14 36.19097958989486 38.0 35.0 41.0 31.0 41.0 15 36.5664089633189 38.0 35.0 41.0 32.0 41.0 16 36.77032446833817 38.0 35.0 41.0 32.0 41.0 17 36.73442123792759 38.0 35.0 41.0 32.0 41.0 18 36.68255625862315 37.0 35.0 40.0 32.0 41.0 19 36.60496931347828 37.0 35.0 40.0 32.0 41.0 20 36.42198249203102 36.0 35.0 40.0 32.0 41.0 21 36.26959655549741 36.0 35.0 40.0 31.0 41.0 22 36.17442789856796 36.0 35.0 40.0 31.0 41.0 23 36.16143251344022 36.0 35.0 40.0 31.0 41.0 24 36.01785051619963 36.0 35.0 40.0 31.0 41.0 25 35.906927065987915 35.0 35.0 40.0 31.0 41.0 26 35.760863980208384 35.0 35.0 40.0 31.0 41.0 27 35.68929064180028 35.0 34.0 40.0 31.0 41.0 28 35.67713735191969 36.0 35.0 40.0 30.0 41.0 29 35.71129216423236 36.0 35.0 40.0 30.0 41.0 30 35.72317902849802 36.0 35.0 40.0 31.0 41.0 31 35.602697559351064 36.0 35.0 40.0 30.0 41.0 32 35.395970312574335 35.0 34.0 40.0 30.0 41.0 33 35.278792996812406 35.0 34.0 40.0 30.0 41.0 34 35.16147057424235 35.0 34.0 40.0 29.0 41.0 35 35.076250059470006 35.0 34.0 40.0 29.0 41.0 36 34.855445073504924 35.0 34.0 40.0 27.0 41.0 37 34.75627051715115 35.0 34.0 40.0 27.0 41.0 38 34.75246681573814 35.0 34.0 40.0 27.0 41.0 39 34.728938103620536 35.0 34.0 40.0 27.0 41.0 40 34.53781102811742 35.0 34.0 40.0 26.0 41.0 41 34.56198677387126 35.0 34.0 40.0 26.0 41.0 42 34.498891479137924 35.0 34.0 40.0 26.0 41.0 43 34.38382178029402 35.0 34.0 40.0 26.0 41.0 44 34.24067272467767 35.0 34.0 40.0 26.0 41.0 45 34.10670107997526 35.0 34.0 40.0 24.0 41.0 46 34.09378181645178 35.0 34.0 40.0 25.0 41.0 47 34.10348732099529 35.0 33.0 40.0 25.0 41.0 48 34.095473143346496 35.0 34.0 39.0 25.0 41.0 49 34.05521908749227 35.0 34.0 39.0 25.0 41.0 50 33.92737285313288 35.0 34.0 39.0 24.0 41.0 51 33.556294305152484 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 2.0 13 3.0 14 2.0 15 10.0 16 29.0 17 73.0 18 191.0 19 384.0 20 602.0 21 1019.0 22 1586.0 23 2374.0 24 3493.0 25 4862.0 26 6555.0 27 7744.0 28 8267.0 29 9251.0 30 10958.0 31 13265.0 32 16792.0 33 22857.0 34 43984.0 35 81368.0 36 26190.0 37 30414.0 38 44915.0 39 83107.0 40 80.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.093819877253914 24.685522622389268 29.754269946239116 13.466387554117704 2 30.049716922784146 27.028640753603884 29.61035253817974 13.311289785432228 3 28.312954945525476 25.63347447547457 31.77934249964318 14.27422807935677 4 25.60231219372948 28.264903182834576 30.275227175412724 15.857557448023218 5 22.725867072648555 32.29102240829725 30.212902611922548 14.770207907131644 6 21.11660878253009 40.934630572339316 27.253675246205816 10.695085398924782 7 86.2676625909891 5.305913697131167 6.589038488986156 1.8373852228935723 8 87.78724011608544 3.8943336980826873 5.936533612445882 2.381892573385984 9 82.90689376278605 5.2709453351729385 8.628145963176175 3.1940149388648367 10 56.97369047052666 19.36367096436557 13.045815690565679 10.61682287454208 11 52.91854988343879 18.367905228602694 17.337884770921548 11.375660117036967 12 45.77096912317427 20.677482277939006 20.959370093724726 12.592178505161996 13 20.931538132166136 45.96174889385794 20.820448165945095 12.286264808030829 14 14.804462629049908 47.153527760597555 25.19839193110995 12.84361767924259 15 12.090013797040774 21.895427946143965 53.89290641800276 12.121651838812502 16 13.790618012274608 15.856130167943288 51.05666301917313 19.296588800608973 17 14.162424473095768 16.951329749274464 28.28559874399353 40.600647033636236 18 21.044055378467103 21.834292782720397 35.67391407773919 21.447737761073316 19 30.058280603263714 24.269470479090348 25.513820828773966 20.158428088871975 20 33.10243113373615 21.623768970931064 24.198582235120604 21.07521766021219 21 21.412769399115085 27.700651791236503 28.0382035301394 22.848375279509014 22 22.770350635139636 24.378419525191493 23.836290974832295 29.014938864836576 23 19.17526999381512 30.392739901993433 23.05223845092535 27.379751653266094 24 19.490698891479138 22.274846567391407 40.90418193063419 17.330272610495268 25 15.724582520576622 24.57086445596841 38.23588182120938 21.468671202245588 26 15.995765735762882 35.57424235215757 27.744183833674295 20.685808078405252 27 17.462771777915222 35.78429040392026 27.326228650268803 19.426709167895716 28 13.900280698415719 29.43027736809553 39.447166849041345 17.222275084447407 29 13.84318949521861 24.455968409534233 39.5249536133974 22.175888481849753 30 17.90903468290594 31.560730767400923 32.1808839621295 18.349350587563634 31 31.143251344022076 27.625243827013655 23.454493553451638 17.77701127551263 32 31.678719254008282 26.364003996384223 25.679861078072218 16.277415671535277 33 29.636043579618445 28.37504162900233 22.80436747704458 19.184547314334647 34 20.49431466768162 28.451876873305103 26.441077120700317 24.612731338312955 35 20.400114182406394 26.40967695894191 30.243351253627672 22.946857605024025 36 32.87739664113421 23.883391217469907 25.74099624149579 17.498215899900092 37 20.90394405062087 32.88596032161378 28.573671440125604 17.636424187639754 38 21.368999476663973 33.36742946857605 22.92354536371854 22.340025691041436 39 21.091155621104715 32.73609591322137 26.42823159998097 19.744516865692944 40 25.347780579475714 25.548313430705555 24.977163518721156 24.12674247109758 41 17.053618155002617 23.879823017270088 27.0243589133641 32.042199914363195 42 23.810599933393597 24.593938817260575 23.732099528997573 27.863361720348255 43 22.882154241400638 25.034492601931586 26.58404300870641 25.499310147961367 44 19.107712070031877 31.780056139683143 27.941386364717637 21.170845425567343 45 16.676578333888386 39.54017793424997 21.74366049764499 22.03958323421666 46 22.49631285979352 33.79347257243446 25.31376373757077 18.396450830201246 47 22.258670726485562 28.393834150054715 25.888481849754985 23.45901327370474 48 24.66173462105714 23.140491935867548 30.17198724963129 22.025786193444027 49 21.51172748465674 22.419715495504068 32.93210904419811 23.136447975641087 50 19.066320947713976 34.45192444930777 26.45487416147295 20.026880441505305 51 18.30819734525905 34.57443265616823 23.338645986964178 23.778724011608546 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 493.0 1 562.5 2 632.0 3 1639.5 4 2647.0 5 2001.5 6 1356.0 7 1560.0 8 1764.0 9 1972.0 10 2180.0 11 2266.5 12 2353.0 13 2329.5 14 2306.0 15 2180.5 16 2055.0 17 2056.5 18 2058.0 19 1872.0 20 1686.0 21 1639.5 22 1593.0 23 1611.5 24 1630.0 25 1606.0 26 1875.5 27 2169.0 28 2412.5 29 2656.0 30 3670.0 31 4684.0 32 5438.5 33 6193.0 34 7722.5 35 9252.0 36 10398.5 37 11545.0 38 12982.0 39 14419.0 40 22215.0 41 30011.0 42 38069.5 43 46128.0 44 45924.5 45 45721.0 46 43377.0 47 41033.0 48 38934.5 49 36836.0 50 34894.5 51 32953.0 52 30934.0 53 28915.0 54 25052.0 55 21189.0 56 17709.0 57 14229.0 58 12692.5 59 11156.0 60 10339.5 61 9523.0 62 8901.0 63 8279.0 64 7241.0 65 6203.0 66 5317.0 67 4431.0 68 3880.0 69 3329.0 70 2628.5 71 1928.0 72 1701.5 73 1475.0 74 1157.5 75 675.5 76 511.0 77 363.0 78 215.0 79 171.0 80 127.0 81 91.5 82 56.0 83 41.0 84 26.0 85 15.5 86 5.0 87 3.5 88 2.0 89 2.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 420380.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.068528204444373 #Duplication Level Percentage of deduplicated Percentage of total 1 78.77883808459002 18.960906863523114 2 5.731431279802589 2.758942308195266 3 2.0149714088321793 1.4549218855387895 4 1.235803630275324 1.1897589812174554 5 0.9018497182292504 1.0853097689685463 6 0.6848855892524178 0.9890512873043593 7 0.5709046172513271 0.9618583717652762 8 0.5319111313813477 1.0241854454327908 9 0.4709213211744121 1.020094479068449 >10 7.558737129651581 43.53630400566429 >50 1.4057651328425929 22.675504263580766 >100 0.11198129080965177 3.4226949223257344 >500 0.0 0.0 >1k 0.0019996659073152102 0.9204674174151679 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2265 0.5387982301727009 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1560 0.37109282078119793 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03806080213140492 0.0 2 0.0 0.0 0.0 0.16247204909843474 0.0 3 0.0 0.0 0.0 0.24144821352109996 0.0 4 0.0 0.0 0.0 0.4208097435653456 0.0 5 0.0 0.0 0.0 0.6919929587516057 0.0 6 0.0 0.0 0.0 1.1622817450877778 0.0 7 0.0 0.0 0.0 1.3739949569437175 0.0 8 0.0 0.0 0.0 1.989628431419192 0.0 9 0.0 0.0 0.0 2.283410247870974 0.0 10 0.0 0.0 0.0 2.7506065940339695 0.0 11 0.0 0.0 0.0 3.1250297350016654 0.0 12 0.0 0.0 0.0 3.4437889528521812 0.0 13 0.0 0.0 0.0 3.609591322137114 0.0 14 0.0 0.0 0.0 3.6752462058137874 0.0 15 0.0 0.0 0.0 3.7413768495171036 0.0 16 0.0 0.0 0.0 3.8945715780960084 0.0 17 0.0 0.0 0.0 4.05085874684809 0.0 18 0.0 0.0 0.0 4.309672201341643 0.0 19 0.0 0.0 0.0 4.40934392692326 0.0 20 0.0 0.0 0.0 4.5071126123983065 0.0 21 0.0 0.0 0.0 4.639136019791617 0.0 22 0.0 0.0 0.0 4.765212426851896 0.0 23 0.0 0.0 0.0 4.922926875683905 0.0 24 0.0 0.0 0.0 5.032827441838337 0.0 25 0.0 0.0 0.0 5.119653646700605 0.0 26 0.0 0.0 0.0 5.213854131975832 0.0 27 0.0 0.0 0.0 5.304248537037918 0.0 28 0.0 0.0 0.0 5.3932156620200775 0.0 29 0.0 0.0 0.0 5.483847947095485 0.0 30 0.0 0.0 0.0 5.637042675674389 0.0 31 0.0 0.0 0.0 5.751700842095247 0.0 32 0.0 0.0 0.0 5.856368047956611 0.0 33 0.0 0.0 0.0 5.948665493125268 0.0 34 0.0 0.0 0.0 6.060231219372948 0.0 35 0.0 0.0 0.0 6.213663827965174 0.0 36 0.0 0.0 0.0 6.335934154812312 0.0 37 0.0 0.0 0.0 6.460821161805985 0.0 38 0.0 0.0 0.0 6.565012607640706 0.0 39 0.0 0.0 0.0 6.693229934820876 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGATTA 35 1.2094642E-7 45.000004 44 TAACCGG 35 1.2094642E-7 45.000004 2 AGTTATA 35 1.2094642E-7 45.000004 20 GGGTTGA 35 1.2094642E-7 45.000004 7 CGCACAG 35 1.2094642E-7 45.000004 28 TATCGAG 35 1.2094642E-7 45.000004 1 TAATCAC 20 7.028176E-4 45.0 25 TGATCGA 20 7.028176E-4 45.0 15 GTTGACG 20 7.028176E-4 45.0 1 TATCACG 25 3.88657E-5 45.0 1 AATCACG 20 7.028176E-4 45.0 1 CGAGTCG 20 7.028176E-4 45.0 16 CGAGTCA 20 7.028176E-4 45.0 11 CACGGCA 20 7.028176E-4 45.0 40 CGAAACG 20 7.028176E-4 45.0 40 CCCTAAA 20 7.028176E-4 45.0 30 AGCTTAG 25 3.88657E-5 45.0 1 TAAACGC 20 7.028176E-4 45.0 35 GTGATAG 40 6.7975634E-9 45.0 1 CTAAGCG 25 3.88657E-5 45.0 1 >>END_MODULE