SRR1546672_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546672_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1576008
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19796	1.2560849944924137	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2922	0.18540515022766382	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1622	0.10291825929817616	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGT	20	7.034083E-4	45.000004	9
TGCGCGA	20	7.034083E-4	45.000004	15
GTCGTAA	20	7.034083E-4	45.000004	28
CGTCGGT	20	7.034083E-4	45.000004	25
CGCGATT	25	3.8914673E-5	45.0	26
ACTACGG	45	3.8562575E-10	45.0	2
TATTACG	25	3.8914673E-5	45.0	1
TCGCGAT	25	3.8914673E-5	45.0	25
CTATACG	30	2.166018E-6	44.999996	1
CGGGTAC	130	0.0	43.269234	6
CGTTTTT	11505	0.0	43.220337	1
GCTACGA	140	0.0	41.785713	10
CGCCAGT	65	0.0	41.538464	26
CGCATCG	55	6.184564E-11	40.909092	21
TAATGCG	55	6.184564E-11	40.909092	1
CGTAAGG	215	0.0	40.813953	2
ACTCCGT	50	1.0822987E-9	40.5	17
CGAATAT	145	0.0	40.34483	14
CGGTCTA	95	0.0	40.263157	31
CGTTAGG	185	0.0	40.135136	2