##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546672_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1576008 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32446789610205 31.0 31.0 33.0 30.0 34.0 2 31.715846620067918 31.0 31.0 34.0 30.0 34.0 3 31.72002616737986 31.0 31.0 34.0 30.0 34.0 4 35.541404612159326 37.0 35.0 37.0 33.0 37.0 5 35.47088656910371 37.0 35.0 37.0 33.0 37.0 6 35.55224910025837 37.0 35.0 37.0 33.0 37.0 7 35.991617428337925 37.0 35.0 37.0 35.0 37.0 8 35.983231684103124 37.0 35.0 37.0 35.0 37.0 9 37.70670834158202 39.0 37.0 39.0 35.0 39.0 10 37.125318526301896 39.0 37.0 39.0 33.0 39.0 11 36.86163902721306 39.0 37.0 39.0 32.0 39.0 12 36.346912579123966 38.0 35.0 39.0 32.0 39.0 13 36.16123712569987 38.0 35.0 39.0 32.0 39.0 14 37.22558768737215 39.0 35.0 41.0 32.0 41.0 15 37.42827130319135 39.0 35.0 41.0 32.0 41.0 16 37.491793188867064 39.0 35.0 41.0 33.0 41.0 17 37.415754869264624 39.0 35.0 41.0 32.0 41.0 18 37.26708430414059 39.0 35.0 41.0 32.0 41.0 19 37.16248521581109 38.0 35.0 41.0 32.0 41.0 20 36.94450662686992 38.0 35.0 41.0 32.0 41.0 21 36.847421459789544 38.0 35.0 41.0 32.0 41.0 22 36.73660920502942 38.0 35.0 41.0 31.0 41.0 23 36.662950949487566 38.0 35.0 40.0 31.0 41.0 24 36.53621555220532 38.0 35.0 40.0 31.0 41.0 25 36.441502200496444 38.0 35.0 40.0 31.0 41.0 26 36.28207280673702 38.0 35.0 40.0 31.0 41.0 27 36.193342927193264 38.0 35.0 40.0 31.0 41.0 28 36.11243851554053 37.0 35.0 40.0 30.0 41.0 29 36.10631671920447 38.0 35.0 40.0 30.0 41.0 30 36.05640390150304 37.0 35.0 40.0 30.0 41.0 31 35.91137735341445 37.0 35.0 40.0 30.0 41.0 32 35.670443931756694 38.0 35.0 40.0 30.0 41.0 33 35.42794833528764 38.0 34.0 40.0 28.0 41.0 34 35.203723585159466 38.0 34.0 40.0 27.0 41.0 35 35.005663676834125 37.0 34.0 40.0 25.0 41.0 36 34.836217201943136 37.0 34.0 40.0 24.0 41.0 37 34.76257227120674 37.0 34.0 40.0 24.0 41.0 38 34.689641169334166 37.0 34.0 40.0 24.0 41.0 39 34.61316693823889 37.0 34.0 40.0 23.0 41.0 40 34.492722752676386 37.0 34.0 40.0 23.0 41.0 41 34.45214174039726 37.0 34.0 40.0 23.0 41.0 42 34.375982228516605 37.0 34.0 40.0 23.0 41.0 43 34.25696189359445 36.0 33.0 40.0 23.0 41.0 44 34.1210101725372 36.0 33.0 40.0 22.0 41.0 45 34.008855919513096 36.0 33.0 40.0 23.0 41.0 46 33.9780952888564 36.0 33.0 40.0 22.0 41.0 47 33.951246440373396 36.0 33.0 40.0 22.0 41.0 48 33.858670768168686 36.0 33.0 40.0 22.0 41.0 49 33.80183412774554 36.0 33.0 40.0 21.0 41.0 50 33.68504855305303 35.0 33.0 40.0 21.0 41.0 51 33.334144242922626 35.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 1.0 13 4.0 14 8.0 15 33.0 16 108.0 17 299.0 18 747.0 19 1423.0 20 2611.0 21 4134.0 22 6445.0 23 9980.0 24 15258.0 25 23298.0 26 31230.0 27 33624.0 28 32939.0 29 34622.0 30 39596.0 31 47083.0 32 58703.0 33 75232.0 34 121936.0 35 203796.0 36 125147.0 37 146209.0 38 201637.0 39 359630.0 40 269.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.266211846640374 24.187821381617354 27.664072771204207 16.881894000538068 2 33.55363678356963 25.62252222069939 27.80975731087659 13.014083684854391 3 26.51782224455713 24.98502545672357 35.096712707042094 13.400439591677198 4 23.9785584844747 27.47860416952198 34.47216003979675 14.070677306206566 5 21.214930381064057 31.74844290130507 33.275211800955326 13.761414916675548 6 19.45358145390125 40.128349602286285 29.97281739686601 10.445251546946462 7 84.46727427779554 3.8077852396688345 10.134593225415099 1.5903472571205224 8 84.88478484880787 3.0048070821975523 9.752805823320694 2.35760224567388 9 79.1850675884894 5.6977502652270795 12.26154943375922 2.855632712524302 10 40.573588458941835 31.39812742067299 16.68525794285308 11.343026177532094 11 34.0078222953183 22.76492251308369 28.714130892736584 14.513124298861428 12 31.510055786518848 22.53421302429937 30.061585981797045 15.894145207384733 13 20.564552971812326 33.71372480342739 31.319193811198925 14.402528413561352 14 16.4556271287963 36.70108273562063 31.65535961746387 15.187930518119197 15 15.478538180009238 25.277727016614126 44.54006578646809 14.703669016908544 16 17.554352515977076 22.79258734727235 42.64940279490967 17.003657341840906 17 17.70314617692296 22.894173126024743 32.20053451505323 27.202146181999076 18 20.657192095471597 25.13673788457927 35.51124105969005 18.694828960259084 19 25.093400541114004 26.950497713209575 29.275676265602712 18.680425480073705 20 26.599991878213817 26.188572646839358 28.374602159379904 18.836833315566924 21 22.235293221861816 29.35860731671413 29.997119303962922 18.40898015746113 22 21.686247785544236 25.623537443972367 28.962670240252585 23.72754453023081 23 18.24381602123847 30.853396683265565 28.407660367206255 22.495126928289704 24 19.22185674184395 26.933365820478066 36.50971314866422 17.33506428901376 25 17.986901081720397 28.33868863609829 34.110550200252796 19.563860081928517 26 17.042426180577763 33.457000218273 30.002005065964134 19.4985685351851 27 18.3717976050883 31.83391201059893 30.59407058847417 19.2002197958386 28 16.46945954589063 29.823706478647317 36.43357140319085 17.273262572271207 29 16.97015497383262 26.614839518581125 35.69632895264491 20.718676554941347 30 19.20840503347699 29.694328962797144 32.50782990949285 18.589436094233026 31 24.850698727417626 28.6285348805336 27.29231069893046 19.22845569311831 32 24.862944858147927 29.00340607408084 28.597253313434955 17.536395754336272 33 23.409272034152114 29.160194618301432 27.300940096750775 20.129593250795683 34 18.917860823041508 30.35955401241618 29.27954680433094 21.443038360211368 35 18.88321632885112 28.806325856213927 30.973446835295253 21.337010979639697 36 25.481342734300842 28.548332241968318 27.32987396003066 18.640451063700183 37 19.566461591565528 31.865828092243188 29.024535408449704 19.543174907741584 38 19.832703894904085 33.68199907614682 25.901201009131935 20.584096019817157 39 19.594634037390673 32.05510378119908 27.224417642550037 21.125844538860207 40 22.3163207293364 29.36311236998797 26.950814970482384 21.36975193019325 41 17.76977020421216 27.914642565266167 28.063182420393808 26.252404810127867 42 21.03656834229268 29.06971284409724 26.01903036025198 23.874688453358107 43 21.274892005624338 28.356074334648046 28.153981451870802 22.215052207856814 44 20.31855168247877 31.340703854295153 28.25448855589566 20.08625590733042 45 18.248574880330555 34.35782051867757 26.111034969365637 21.282569631626234 46 22.053822061816945 32.12286993467038 26.62708564931143 19.196222354201247 47 20.91023649626144 29.515015152207347 27.414264394596984 22.16048395693423 48 21.832693742671356 28.073778813305516 29.133037395749263 20.960490048273865 49 20.567027578540213 27.195293424906474 29.44915254237288 22.788526454180435 50 19.15370987964528 31.83169120968929 28.64122517144583 20.3733737392196 51 18.733153638814017 32.88244729722184 26.113509576093524 22.270889487870623 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2022.0 1 1944.5 2 1867.0 3 14565.0 4 27263.0 5 18556.0 6 9849.0 7 10675.5 8 11502.0 9 13207.0 10 14912.0 11 16240.0 12 17568.0 13 18326.0 14 19084.0 15 18643.0 16 18202.0 17 16972.0 18 15742.0 19 14756.0 20 13770.0 21 13693.5 22 13617.0 23 12601.5 24 11586.0 25 12057.0 26 13556.0 27 14584.0 28 16414.5 29 18245.0 30 21318.5 31 24392.0 32 27380.5 33 30369.0 34 35618.5 35 40868.0 36 44702.0 37 48536.0 38 57837.0 39 67138.0 40 81846.5 41 96555.0 42 112588.5 43 128622.0 44 133549.5 45 138477.0 46 143903.0 47 149329.0 48 147703.0 49 146077.0 50 133541.5 51 121006.0 52 105219.5 53 89433.0 54 80355.5 55 71278.0 56 62301.5 57 53325.0 58 47260.5 59 41196.0 60 37154.0 61 33112.0 62 27877.5 63 22643.0 64 20440.5 65 18238.0 66 14896.5 67 11555.0 68 9424.5 69 7294.0 70 6079.0 71 4864.0 72 4339.5 73 3815.0 74 3095.5 75 1988.0 76 1600.0 77 1179.5 78 759.0 79 603.0 80 447.0 81 323.0 82 199.0 83 138.0 84 77.0 85 69.0 86 61.0 87 35.0 88 9.0 89 8.0 90 7.0 91 7.5 92 8.0 93 4.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1576008.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.432361596311072 #Duplication Level Percentage of deduplicated Percentage of total 1 77.10778765014085 21.923565003603738 2 7.5361003891103255 4.285382625785707 3 3.2161082525845446 2.743246583110917 4 1.9515476937862593 2.2194843880871153 5 1.251432491307046 1.7790590553107173 6 0.9354286353144932 1.5957867124083283 7 0.7554280720887416 1.5035022873941872 8 0.5658929784442618 1.2871739030352574 9 0.5091120203470978 1.302773134998345 >10 4.9524785364379875 31.098588040554603 >50 0.9908963586463889 19.584798989223714 >100 0.2246294795921493 8.547403318719555 >500 0.0020297842714068395 0.4245005884783264 >1k 9.021263428474842E-4 0.43533753703615674 >5k 0.0 0.0 >10k+ 2.2553158571187105E-4 1.2693978322533155 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19796 1.2560849944924137 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2922 0.18540515022766382 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1622 0.10291825929817616 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06992350292638108 0.0 2 0.0 0.0 0.0 0.21966893569068177 0.0 3 0.0 0.0 0.0 0.3657976355449972 0.0 4 0.0 0.0 0.0 0.5664945863218969 0.0 5 0.0 0.0 0.0 0.9689671626032356 0.0 6 0.0 0.0 0.0 1.8250541875421953 0.0 7 0.0 0.0 0.0 2.3116633925716115 0.0 8 0.0 0.0 0.0 3.4758072294049267 0.0 9 0.0 0.0 0.0 4.115397891381262 0.0 10 0.0 0.0 0.0 4.95308399449749 0.0 11 0.0 0.0 0.0 5.473449373353435 0.0 12 0.0 0.0 0.0 5.965959563657037 0.0 13 0.0 0.0 0.0 6.247937827726763 0.0 14 0.0 0.0 0.0 6.391338115034949 0.0 15 0.0 0.0 0.0 6.511324815610073 0.0 16 0.0 0.0 0.0 6.709229902386283 0.0 17 0.0 0.0 0.0 6.907896406617225 0.0 18 0.0 0.0 0.0 7.246283013791808 0.0 19 0.0 0.0 0.0 7.3988203105568 0.0 20 0.0 0.0 0.0 7.576801640600809 0.0 21 0.0 0.0 0.0 7.77089964010335 0.0 22 0.0 0.0 0.0 7.973182877244278 0.0 23 0.0 0.0 0.0 8.20401926893772 0.0 24 0.0 0.0 0.0 8.387013263892062 0.0 25 0.0 0.0 0.0 8.540946492657397 0.0 26 0.0 0.0 0.0 8.691199537058187 0.0 27 0.0 0.0 0.0 8.853635260734718 0.0 28 0.0 0.0 0.0 9.023685158958584 0.0 29 0.0 0.0 0.0 9.20813853736783 0.0 30 0.0 0.0 0.0 9.49531982071157 0.0 31 0.0 0.0 0.0 9.699760407307577 0.0 32 0.0 0.0 0.0 9.894746727173974 0.0 33 6.345145456114435E-5 0.0 0.0 10.084910736493724 0.0 34 6.345145456114435E-5 0.0 0.0 10.289478225998852 0.0 35 6.345145456114435E-5 0.0 0.0 10.503119273506226 0.0 36 6.345145456114435E-5 0.0 0.0 10.70736950573855 0.0 37 6.345145456114435E-5 0.0 0.0 10.906416718696859 0.0 38 6.345145456114435E-5 0.0 0.0 11.118154222567398 0.0 39 6.345145456114435E-5 0.0 0.0 11.336554129166856 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGT 20 7.034083E-4 45.000004 9 TGCGCGA 20 7.034083E-4 45.000004 15 GTCGTAA 20 7.034083E-4 45.000004 28 CGTCGGT 20 7.034083E-4 45.000004 25 CGCGATT 25 3.8914673E-5 45.0 26 ACTACGG 45 3.8562575E-10 45.0 2 TATTACG 25 3.8914673E-5 45.0 1 TCGCGAT 25 3.8914673E-5 45.0 25 CTATACG 30 2.166018E-6 44.999996 1 CGGGTAC 130 0.0 43.269234 6 CGTTTTT 11505 0.0 43.220337 1 GCTACGA 140 0.0 41.785713 10 CGCCAGT 65 0.0 41.538464 26 CGCATCG 55 6.184564E-11 40.909092 21 TAATGCG 55 6.184564E-11 40.909092 1 CGTAAGG 215 0.0 40.813953 2 ACTCCGT 50 1.0822987E-9 40.5 17 CGAATAT 145 0.0 40.34483 14 CGGTCTA 95 0.0 40.263157 31 CGTTAGG 185 0.0 40.135136 2 >>END_MODULE