SRR1546669_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546669_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2431841
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11747	0.48304967306661906	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4863	0.19997195540333434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGC	40	6.8212103E-9	45.000004	35
TCTAGCG	50	2.1827873E-11	45.000004	1
TCGTATA	20	7.0348405E-4	45.000004	28
TATCGTT	25	3.8920938E-5	45.000004	19
AGTACGA	55	1.8189894E-12	45.0	34
GTACGAC	50	1.0822987E-9	40.500004	35
AACACGT	1245	0.0	40.301205	41
TACGGGA	565	0.0	40.22124	4
CACGACC	1365	0.0	40.21978	27
ACACGAC	1365	0.0	40.054947	26
CGTTTTT	8440	0.0	39.96149	1
CACGTGA	1265	0.0	39.486168	43
ACGACCA	1395	0.0	39.35484	28
AGGGTAC	1285	0.0	39.22179	6
TAGGGCG	1280	0.0	39.02344	5
CGAGACA	1400	0.0	38.892857	22
GACACGA	1415	0.0	38.798588	25
GCGAGAC	1400	0.0	38.732143	21
AGGGCGA	3125	0.0	38.664	6
AGACACG	1465	0.0	38.24232	24