SRR1546668_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546668_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1039463
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20350	1.9577416415976328	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	1127	0.1084213675715249	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1087	0.10457322675265979	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGACG	20	7.0329756E-4	45.0	1
CTAAACG	20	7.0329756E-4	45.0	45
TATAACG	25	3.890548E-5	45.0	1
CGTTTTT	11720	0.0	43.809727	1
ACGGGTA	70	0.0	41.785713	5
CGTTCGG	165	0.0	40.90909	45
TATACGG	100	0.0	40.5	2
ATAACGG	95	0.0	40.263157	2
AATCGAG	45	1.9279469E-8	40.0	1
TACGGGA	305	0.0	39.836067	4
CGTAAGG	160	0.0	39.375	2
TAGGGAT	745	0.0	38.959732	5
CTCACGA	35	6.247714E-6	38.571426	24
CGACGGT	35	6.247714E-6	38.571426	28
GTTTTTT	13625	0.0	38.411007	2
ACGTAGG	100	0.0	38.25	2
AGGGCGA	1165	0.0	38.04721	6
TAAGGGA	965	0.0	37.53886	4
CTATACG	30	1.1398469E-4	37.499996	1
ATAGGGC	525	0.0	37.285717	4