##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546668_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1039463 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.261642790556277 31.0 31.0 33.0 30.0 34.0 2 31.64807693972753 31.0 31.0 34.0 30.0 34.0 3 31.565801764949786 31.0 31.0 34.0 30.0 34.0 4 35.46918360730493 37.0 35.0 37.0 33.0 37.0 5 35.42488765833897 37.0 35.0 37.0 33.0 37.0 6 35.50092788295495 37.0 35.0 37.0 33.0 37.0 7 35.92954150364179 37.0 35.0 37.0 35.0 37.0 8 35.91709950233919 37.0 35.0 37.0 35.0 37.0 9 37.63287582145781 39.0 37.0 39.0 35.0 39.0 10 37.04912247958802 39.0 37.0 39.0 33.0 39.0 11 36.81834851264547 39.0 37.0 39.0 32.0 39.0 12 36.41254089852164 39.0 35.0 39.0 32.0 39.0 13 36.31292984935491 39.0 35.0 39.0 32.0 39.0 14 37.40205567682544 40.0 35.0 41.0 32.0 41.0 15 37.55670957023001 40.0 35.0 41.0 32.0 41.0 16 37.58176673917205 40.0 35.0 41.0 32.0 41.0 17 37.50361965745775 39.0 35.0 41.0 32.0 41.0 18 37.27426757854777 39.0 36.0 41.0 32.0 41.0 19 37.085948225189355 38.0 35.0 41.0 32.0 41.0 20 36.81732298311724 38.0 35.0 41.0 32.0 41.0 21 36.71880191983745 38.0 35.0 40.0 31.0 41.0 22 36.62795308731528 38.0 35.0 40.0 31.0 41.0 23 36.52558773135744 38.0 35.0 40.0 31.0 41.0 24 36.36831902626645 38.0 35.0 40.0 31.0 41.0 25 36.24794340924112 38.0 35.0 40.0 31.0 41.0 26 36.09116534210453 37.0 35.0 40.0 30.0 41.0 27 35.987270350171194 37.0 35.0 40.0 30.0 41.0 28 35.88294821460696 37.0 35.0 40.0 30.0 41.0 29 35.85636525783025 37.0 35.0 40.0 30.0 41.0 30 35.76400506800146 37.0 35.0 40.0 30.0 41.0 31 35.59820503471504 37.0 35.0 40.0 29.0 41.0 32 35.269980749675554 37.0 34.0 40.0 27.0 41.0 33 34.882323853759104 37.0 34.0 40.0 24.0 41.0 34 34.476041956279346 37.0 34.0 40.0 22.0 41.0 35 34.14280546782329 37.0 33.0 40.0 21.0 41.0 36 33.94723429309172 37.0 33.0 40.0 18.0 41.0 37 33.85484235610118 37.0 33.0 40.0 18.0 41.0 38 33.76402815684637 37.0 33.0 40.0 18.0 41.0 39 33.642632782504045 37.0 33.0 40.0 18.0 41.0 40 33.53290400908931 36.0 33.0 40.0 18.0 41.0 41 33.46551151892852 36.0 33.0 40.0 17.0 41.0 42 33.36908192018379 36.0 33.0 40.0 16.0 41.0 43 33.233676427155174 36.0 33.0 40.0 15.0 41.0 44 33.09239386106095 36.0 33.0 40.0 15.0 41.0 45 32.99553615665012 35.0 32.0 40.0 15.0 41.0 46 32.950687999476656 35.0 32.0 40.0 15.0 41.0 47 32.90775717846619 35.0 32.0 40.0 15.0 41.0 48 32.79691052014358 35.0 32.0 40.0 15.0 41.0 49 32.7197283597396 35.0 32.0 40.0 15.0 41.0 50 32.61955836811892 35.0 32.0 40.0 15.0 41.0 51 32.25929638669197 35.0 31.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 1.0 13 2.0 14 11.0 15 35.0 16 108.0 17 257.0 18 646.0 19 1300.0 20 2199.0 21 3559.0 22 5479.0 23 8129.0 24 12621.0 25 20133.0 26 28203.0 27 30380.0 28 28154.0 29 26912.0 30 28748.0 31 32127.0 32 38751.0 33 49017.0 34 74557.0 35 115016.0 36 84956.0 37 98401.0 38 133239.0 39 216401.0 40 117.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.289004995848817 22.994950277210442 25.736654407131375 20.97939031980936 2 37.47175224130152 23.630470733446018 26.3879522407243 12.509824784528165 3 26.427299480597195 23.518874649698933 37.0984825818716 12.955343287832275 4 22.510854162197212 26.22075052214461 37.249906923093945 14.018488392564239 5 20.41900481306213 30.03743278981551 36.04062867076558 13.502933726356783 6 18.66040445884077 38.2340689375187 33.13643679476807 9.969089808872464 7 79.67902657429846 3.639860197044051 14.89855819783869 1.7825550308187978 8 79.85767651181426 3.091788740917185 14.601096912540418 2.449437834728124 9 74.38898739060458 5.253962863517027 16.979344142119537 3.377705603758864 10 38.492760204066904 25.925405714296705 23.041512781118712 12.54032130051767 11 31.27114673634367 23.45326384873728 30.168654391738812 15.106935023180238 12 27.15248161791233 21.773646584823126 33.908277639511944 17.165594157752608 13 20.80968730969741 27.959725358189758 35.23376974457003 15.9968175875428 14 17.557912114235908 31.34782094215956 34.72071636989484 16.373550573709693 15 17.03264089246082 23.944960041867773 43.643015672515524 15.37938339315589 16 18.79008680443652 22.321910447990934 41.908658605453006 16.979344142119537 17 18.890138465727016 22.62437431635373 34.62441664590274 23.861070572016512 18 20.5360844974761 23.85260466221501 37.14870081955779 18.4626100207511 19 24.261373420698956 25.58696172927752 32.06732707176687 18.084337778256657 20 25.184927217226587 24.745854349794076 31.098172806535686 18.971045626443654 21 21.848108109668164 27.258594100992532 32.90458631043144 17.98871147890786 22 21.60327015006787 24.316882852011087 32.12629982981598 21.953547168105068 23 19.550287023203328 27.635038476598012 31.50395925588501 21.31071524431365 24 19.80763144046493 24.901607849437642 37.587966094031245 17.702794616066182 25 19.846786273296885 25.85027076480837 35.33699612203609 18.965946839858656 26 18.050474139050646 29.729196710224414 32.658497705065024 19.561831445659923 27 18.80894269444896 28.488363703181353 33.21994145053744 19.482752151832244 28 17.92098420049583 27.51016630702584 37.000547398031486 17.568302094446846 29 18.910245001505587 25.04100675060103 36.412455277388425 19.63629297050496 30 20.40851862933072 27.08706322399162 34.2112225254771 18.29319562120056 31 23.535229248179107 26.51927004616807 30.829572577378894 19.115928128273925 32 24.745758146273605 26.958150506559637 31.179657188375153 17.11643415879161 33 23.032084836112492 27.453983451070407 30.091980185922925 19.421951526894173 34 20.56581138530183 28.81786076079668 30.669970936916464 19.94635691698502 35 19.876801771684033 28.065549230708548 32.03808120154349 20.019567796063928 36 24.001239101343675 28.05544786105903 29.78990113164201 18.153411905955284 37 20.42391119260618 30.622927415405837 30.81389140354202 18.139269988445957 38 20.801702417498266 31.055169832884864 28.801890976398393 19.34123677321848 39 20.135300631191296 30.50729078379894 29.485898006951665 19.871510578058093 40 22.47593228426601 27.993877607957184 29.184011359711697 20.346178748065107 41 19.14854112171381 27.331420165989556 29.71986496873867 23.800173743557973 42 21.429237981534698 28.355218030848622 27.84101021392777 22.374533773688913 43 21.1345665983301 27.915086924690925 29.7224624637914 21.227884013187577 44 21.034322529998665 30.101215723888195 28.523574191673973 20.340887554439167 45 19.220597558547055 31.7467769415554 27.778189315059798 21.254436184837747 46 21.862153823657025 29.847430836884044 27.928363010516005 20.362052328942926 47 20.961881279083528 28.996991715914856 28.728295283237593 21.312831721764024 48 21.329667337846562 27.66139824120724 29.51216156804042 21.496772852905778 49 20.839221790482203 26.8378961059701 30.385400923361388 21.937481180186307 50 20.007061338402618 29.06818232106386 30.02088578429439 20.903870556239134 51 19.361728123078937 30.662274655278736 28.382347423621617 21.59364979802071 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1079.0 1 1289.5 2 1500.0 3 15206.0 4 28912.0 5 19752.5 6 10593.0 7 11038.0 8 11483.0 9 12552.0 10 13621.0 11 14597.5 12 15574.0 13 15759.5 14 15945.0 15 15343.0 16 14741.0 17 13863.5 18 12986.0 19 11907.5 20 10829.0 21 10409.5 22 9990.0 23 9419.5 24 8849.0 25 9042.5 26 9745.0 27 10254.0 28 10975.5 29 11697.0 30 13173.5 31 14650.0 32 16323.5 33 17997.0 34 20784.0 35 23571.0 36 26200.0 37 28829.0 38 32093.0 39 35357.0 40 44104.0 41 52851.0 42 61945.0 43 71039.0 44 78116.0 45 85193.0 46 86503.5 47 87814.0 48 83971.5 49 80129.0 50 72994.5 51 65860.0 52 60897.5 53 55935.0 54 51540.5 55 47146.0 56 44197.5 57 41249.0 58 37948.0 59 34647.0 60 31921.0 61 29195.0 62 26395.0 63 23595.0 64 20816.5 65 18038.0 66 15528.0 67 13018.0 68 11198.5 69 9379.0 70 8011.0 71 6643.0 72 5185.5 73 3728.0 74 3247.5 75 2301.5 76 1836.0 77 1305.0 78 774.0 79 655.5 80 537.0 81 379.0 82 221.0 83 164.5 84 108.0 85 68.5 86 29.0 87 24.5 88 20.0 89 13.5 90 7.0 91 6.5 92 6.0 93 4.0 94 2.0 95 3.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1039463.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.73083771588286 #Duplication Level Percentage of deduplicated Percentage of total 1 76.75299881895647 28.192019438264392 2 7.492575996034223 5.504171859685049 3 3.3652152217619613 3.7082152256867214 4 2.053201894673762 3.0166330236482066 5 1.4054717142522828 2.5812076725232145 6 1.073867140752507 2.3666423805239685 7 0.8409062779007999 2.1621034419488967 8 0.6961242217101979 2.045538065418604 9 0.5940401357859979 1.9637632641848857 >10 5.539801145648244 40.92008912682326 >50 0.1642181094961942 3.748541415028845 >100 0.019210860745898256 1.1974461547057442 >500 0.0015789748543188376 0.4125524850883455 >1k 5.263249514396125E-4 0.21400918509503208 >5k 0.0 0.0 >10k+ 2.6316247571980627E-4 1.967067261374843 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20350 1.9577416415976328 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT 1127 0.1084213675715249 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1087 0.10457322675265979 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.620352047162814E-5 0.0 0.0 0.0605120143766541 0.0 2 9.620352047162814E-5 0.0 0.0 0.19221463390231303 0.0 3 9.620352047162814E-5 0.0 0.0 0.3471023018616343 0.0 4 9.620352047162814E-5 0.0 0.0 0.530851025962444 0.0 5 9.620352047162814E-5 0.0 0.0 0.9187436205040487 0.0 6 9.620352047162814E-5 0.0 0.0 1.749364816256086 0.0 7 9.620352047162814E-5 0.0 0.0 2.2254760390701738 0.0 8 9.620352047162814E-5 0.0 0.0 3.2886211438021364 0.0 9 9.620352047162814E-5 0.0 0.0 3.8427534217187143 0.0 10 9.620352047162814E-5 0.0 0.0 4.530993407172742 0.0 11 9.620352047162814E-5 0.0 0.0 4.915134064415954 0.0 12 9.620352047162814E-5 0.0 0.0 5.299659535741051 0.0 13 9.620352047162814E-5 0.0 0.0 5.506304697714108 0.0 14 9.620352047162814E-5 0.0 0.0 5.61867040962497 0.0 15 9.620352047162814E-5 0.0 0.0 5.714392912494239 0.0 16 9.620352047162814E-5 0.0 0.0 5.876014826886575 0.0 17 9.620352047162814E-5 0.0 0.0 6.046679872203243 0.0 18 9.620352047162814E-5 0.0 0.0 6.332789142085866 0.0 19 9.620352047162814E-5 0.0 0.0 6.4463092962423865 0.0 20 9.620352047162814E-5 0.0 0.0 6.5808018178617225 0.0 21 9.620352047162814E-5 0.0 0.0 6.722509603516431 0.0 22 9.620352047162814E-5 0.0 0.0 6.884516331990653 0.0 23 9.620352047162814E-5 0.0 0.0 7.065378950477314 0.0 24 9.620352047162814E-5 0.0 0.0 7.216995698740599 0.0 25 9.620352047162814E-5 0.0 0.0 7.349083132348145 0.0 26 9.620352047162814E-5 0.0 0.0 7.476745204013996 0.0 27 9.620352047162814E-5 0.0 0.0 7.615951698136442 0.0 28 9.620352047162814E-5 0.0 0.0 7.749866998632948 0.0 29 9.620352047162814E-5 0.0 0.0 7.908025586288304 0.0 30 9.620352047162814E-5 0.0 0.0 8.133430434753329 0.0 31 9.620352047162814E-5 0.0 0.0 8.290145969601612 0.0 32 9.620352047162814E-5 0.0 0.0 8.458886944508848 0.0 33 9.620352047162814E-5 0.0 0.0 8.632053281357779 0.0 34 9.620352047162814E-5 0.0 0.0 8.808394334382273 0.0 35 9.620352047162814E-5 0.0 0.0 8.991084819757894 0.0 36 9.620352047162814E-5 0.0 0.0 9.16992716431465 0.0 37 9.620352047162814E-5 0.0 0.0 9.34174665187698 0.0 38 9.620352047162814E-5 0.0 0.0 9.530016941439955 0.0 39 9.620352047162814E-5 0.0 0.0 9.746955880103476 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGACG 20 7.0329756E-4 45.0 1 CTAAACG 20 7.0329756E-4 45.0 45 TATAACG 25 3.890548E-5 45.0 1 CGTTTTT 11720 0.0 43.809727 1 ACGGGTA 70 0.0 41.785713 5 CGTTCGG 165 0.0 40.90909 45 TATACGG 100 0.0 40.5 2 ATAACGG 95 0.0 40.263157 2 AATCGAG 45 1.9279469E-8 40.0 1 TACGGGA 305 0.0 39.836067 4 CGTAAGG 160 0.0 39.375 2 TAGGGAT 745 0.0 38.959732 5 CTCACGA 35 6.247714E-6 38.571426 24 CGACGGT 35 6.247714E-6 38.571426 28 GTTTTTT 13625 0.0 38.411007 2 ACGTAGG 100 0.0 38.25 2 AGGGCGA 1165 0.0 38.04721 6 TAAGGGA 965 0.0 37.53886 4 CTATACG 30 1.1398469E-4 37.499996 1 ATAGGGC 525 0.0 37.285717 4 >>END_MODULE