SRR1546667_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546667_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	695727
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3459	0.4971777723158653	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2479	0.3563179235533478	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	815	0.11714364973617526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	20	7.031364E-4	45.000004	13
AACGTAG	30	2.1642609E-6	45.000004	1
TAATACG	40	6.8084773E-9	45.000004	1
CGTATGA	20	7.031364E-4	45.000004	27
ACGGGTA	40	6.8084773E-9	45.000004	5
TCTAGCG	20	7.031364E-4	45.000004	1
TAGCCGT	20	7.031364E-4	45.000004	44
ACGGGCC	30	2.1642609E-6	45.000004	5
ATGTACG	30	2.1642609E-6	45.000004	1
ACGATAT	20	7.031364E-4	45.000004	45
CGCTCTA	20	7.031364E-4	45.000004	12
CTACGAT	20	7.031364E-4	45.000004	43
TGTTACG	20	7.031364E-4	45.000004	1
TTACGAG	20	7.031364E-4	45.000004	1
ATCGGTA	20	7.031364E-4	45.000004	27
TCGAAGT	30	2.1642609E-6	45.000004	40
ATACGAG	45	3.8380676E-10	45.0	1
TACGTGG	45	3.8380676E-10	45.0	2
GTATGCG	65	0.0	41.53846	1
AATACGG	65	0.0	41.53846	2