##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546667_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 695727 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.35484176983213 31.0 31.0 33.0 30.0 34.0 2 31.76767323964716 31.0 31.0 34.0 30.0 34.0 3 31.878110235767764 31.0 31.0 34.0 30.0 34.0 4 35.641408196030916 37.0 35.0 37.0 33.0 37.0 5 35.55092442869114 37.0 35.0 37.0 33.0 37.0 6 35.61598011863849 37.0 35.0 37.0 33.0 37.0 7 35.95488747741571 37.0 35.0 37.0 35.0 37.0 8 35.93668781001743 37.0 35.0 37.0 35.0 37.0 9 37.66011955839 39.0 37.0 39.0 35.0 39.0 10 37.151034816817514 39.0 37.0 39.0 33.0 39.0 11 36.86276944836121 39.0 37.0 39.0 33.0 39.0 12 36.080104696238614 37.0 35.0 39.0 32.0 39.0 13 35.78235141082637 37.0 35.0 39.0 31.0 39.0 14 36.788059109392044 39.0 35.0 41.0 31.0 41.0 15 37.06949708721955 39.0 35.0 41.0 32.0 41.0 16 37.18685633876506 39.0 35.0 41.0 32.0 41.0 17 37.12172446951175 38.0 35.0 41.0 32.0 41.0 18 37.02981198084881 38.0 35.0 41.0 32.0 41.0 19 36.942820962820186 38.0 35.0 41.0 32.0 41.0 20 36.77205858044894 38.0 35.0 41.0 32.0 41.0 21 36.65530732600575 38.0 35.0 41.0 32.0 41.0 22 36.51674722987609 38.0 35.0 40.0 31.0 41.0 23 36.45619474305295 38.0 35.0 40.0 31.0 41.0 24 36.320608514546656 38.0 35.0 40.0 31.0 41.0 25 36.2043574563011 37.0 35.0 40.0 31.0 41.0 26 36.018688364832755 37.0 35.0 40.0 31.0 41.0 27 35.94335421796193 37.0 35.0 40.0 30.0 41.0 28 35.903049615725706 37.0 35.0 40.0 30.0 41.0 29 35.95424498402391 37.0 35.0 40.0 30.0 41.0 30 35.9278768827428 37.0 35.0 40.0 30.0 41.0 31 35.80905153889385 37.0 35.0 40.0 30.0 41.0 32 35.64980804252242 37.0 34.0 40.0 30.0 41.0 33 35.5070825194365 37.0 34.0 40.0 29.0 41.0 34 35.392712946313715 37.0 34.0 40.0 29.0 41.0 35 35.26162129685925 37.0 34.0 40.0 28.0 41.0 36 35.09273465022918 37.0 34.0 40.0 27.0 41.0 37 35.0002256632271 36.0 34.0 40.0 27.0 41.0 38 34.95063868442651 36.0 34.0 40.0 27.0 41.0 39 34.8779046953762 36.0 34.0 40.0 27.0 41.0 40 34.707074757771366 36.0 34.0 40.0 25.0 41.0 41 34.65910191784996 36.0 34.0 40.0 25.0 41.0 42 34.58615232699033 36.0 34.0 40.0 25.0 41.0 43 34.45504199204573 35.0 34.0 40.0 25.0 41.0 44 34.30836808115827 35.0 34.0 40.0 24.0 41.0 45 34.200373134864684 35.0 33.0 40.0 23.0 41.0 46 34.16350378812379 35.0 33.0 40.0 23.0 41.0 47 34.10890909796515 35.0 33.0 40.0 23.0 41.0 48 34.04070705894697 35.0 33.0 40.0 23.0 41.0 49 33.97389062089009 35.0 33.0 40.0 24.0 41.0 50 33.86381296111837 35.0 33.0 39.0 24.0 41.0 51 33.479657969289676 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 0.0 13 4.0 14 17.0 15 22.0 16 55.0 17 146.0 18 341.0 19 628.0 20 1092.0 21 1789.0 22 2769.0 23 4175.0 24 5972.0 25 8195.0 26 10847.0 27 12620.0 28 13729.0 29 15158.0 30 17998.0 31 21800.0 32 27106.0 33 35247.0 34 62871.0 35 108412.0 36 50689.0 37 60623.0 38 85840.0 39 147467.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.56895305198735 24.723490679533782 28.616684417882297 14.09087185059657 2 31.46464058459712 27.068807161429696 28.340139163781195 13.126413090191985 3 28.017742591562495 26.17262230731307 31.105735439331806 14.703899661792628 4 24.85155815427603 29.425622406489904 30.55652576369754 15.166293675536524 5 23.099290382578225 32.72562370010076 29.821323593880933 14.353762323440087 6 21.35507174509542 40.85165589376293 26.7423860221035 11.050886339038158 7 86.01534797413353 4.577082677544497 7.622098897987286 1.7854704503346859 8 86.51338815368672 3.905698643289681 6.748049162961908 2.832864040061691 9 80.99556291476398 5.724371772261247 9.845097286723096 3.4349680262516764 10 50.03658044031639 22.282878197913835 14.482692205419653 13.19784915635012 11 43.007817721606315 21.046329954134308 21.634779159066703 14.31107316519267 12 37.99220096388382 20.587241834800142 25.64094824550434 15.77960895581169 13 20.67477616938828 37.06295716566987 26.976960790654953 15.285305874286898 14 16.147856846147988 38.89729735945278 28.817194100559558 16.13765169383968 15 14.523225345573767 23.296925374464408 46.4988422182839 15.68100706167793 16 16.624049375689026 18.537012362607747 45.24605197153481 19.592886290168412 17 16.923448421579153 20.063904376285528 29.228706087301486 33.78394111483384 18 21.527984396178386 22.384211048299118 34.3269702052673 21.7608343502552 19 28.25734806899833 25.16978642484768 25.716121409690867 20.856744096463125 20 30.532378361052537 22.70186438071255 25.035538364904625 21.730218893330285 21 23.240581434959402 28.149834633412247 27.324942110914197 21.28464182071416 22 23.365343015291916 24.30450449673507 25.645404016230504 26.68474847174251 23 20.574305726240322 29.700442846116363 24.36458553426847 25.360665893374843 24 20.35281080078824 23.920302072508328 36.835425389556534 18.891461737146898 25 18.950967836522086 24.59916030281993 33.71178637597793 22.738085484680052 26 17.773925692117743 32.84822926233997 27.151167052593905 22.226677992948385 27 18.250549425277445 31.851286495996273 28.320591266401905 21.577572812324377 28 17.2376521250433 27.648488559449326 36.098354670725726 19.015504644781643 29 17.683947870357194 23.976071073855117 35.95835722920053 22.381623826587152 30 19.74050166228995 29.762392432663958 30.50909336564486 19.988012539401232 31 28.65434286724534 25.869342428854996 24.888210461862194 20.588104242037467 32 29.538597754579023 25.442450846380837 25.75018649556507 19.26876490347507 33 26.83753828728797 27.496704885680735 23.76104420268295 21.904712624348342 34 20.95620839783421 27.017493930809067 27.251493761202312 24.774803910154414 35 20.936516765915368 25.812998489349994 30.04583694466364 23.204647800071005 36 29.025609182912266 24.704086516694048 26.98112909230201 19.28917520809168 37 21.120784445623066 30.606257914383082 28.993700115131364 19.27925752486248 38 22.347989944331612 30.391518512290023 25.154406829115445 22.106084714262924 39 21.46459746423525 30.620343899259332 26.519597485795433 21.395461150709977 40 25.215781477504827 25.84217660087937 26.36853248472461 22.573509436891197 41 18.59163148763811 23.829318108970902 29.058955596088698 28.520094807302286 42 23.579794948305874 24.659816278511542 25.508568734575487 26.2518200386071 43 23.83592989779037 25.212188114015987 26.272661546842368 24.679220441351276 44 21.58418460114384 29.110125092169774 27.676085591043613 21.629604715642774 45 18.843023197317336 34.53423541130357 24.003236901830746 22.61950448954834 46 23.41234420972594 30.493138831754408 25.70390397382882 20.390612984690833 47 22.702583053410315 27.281678014508564 26.661176007255722 23.354562924825398 48 23.79439061585938 23.932806977449488 30.223924039170534 22.048878367520594 49 21.87668438913539 23.524600885117295 31.17918378904369 23.41953093670362 50 19.709023798127713 30.485664635697624 27.53407586596467 22.271235700209996 51 19.599354344448326 31.74463546764751 24.846096241772994 23.80991394613117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1108.0 1 1220.0 2 1332.0 3 3663.0 4 5994.0 5 4449.5 6 2905.0 7 3147.5 8 3390.0 9 3706.0 10 4022.0 11 4276.5 12 4531.0 13 4402.5 14 4274.0 15 4189.0 16 4104.0 17 3923.0 18 3742.0 19 3632.5 20 3523.0 21 3373.0 22 3223.0 23 3479.5 24 3736.0 25 3610.0 26 4332.0 27 5180.0 28 5201.0 29 5222.0 30 6511.0 31 7800.0 32 9051.5 33 10303.0 34 12036.5 35 13770.0 36 15089.5 37 16409.0 38 21054.0 39 25699.0 40 34573.0 41 43447.0 42 52582.5 43 61718.0 44 61687.5 45 61657.0 46 61811.5 47 61966.0 48 61068.5 49 60171.0 50 56458.0 51 52745.0 52 47541.5 53 42338.0 54 38815.0 55 35292.0 56 31886.0 57 28480.0 58 27456.0 59 26432.0 60 24531.5 61 22631.0 62 20431.0 63 18231.0 64 16282.0 65 14333.0 66 12471.5 67 10610.0 68 9211.0 69 7812.0 70 6459.0 71 5106.0 72 4294.5 73 3483.0 74 3024.0 75 1871.0 76 1177.0 77 1036.5 78 896.0 79 685.5 80 475.0 81 352.0 82 229.0 83 162.5 84 96.0 85 66.5 86 37.0 87 28.5 88 20.0 89 18.5 90 17.0 91 10.5 92 4.0 93 4.5 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695727.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.652862679341364 #Duplication Level Percentage of deduplicated Percentage of total 1 78.15781419464973 20.83129489047477 2 6.448248105726689 3.4372854256851313 3 2.529631287028109 2.022657459675773 4 1.4909664343133284 1.5895409453304155 5 1.0471594898597247 1.3954899043300204 6 0.8231340147272442 1.3163326716732118 7 0.6709005302682325 1.2516993793315556 8 0.567656049195413 1.2103726982642233 9 0.4667680762582816 1.1196634895651087 >10 6.5755297263428725 41.421234680926695 >50 1.1217899881882563 19.877932413286945 >100 0.09877396122412255 3.549682448385695 >500 5.42714072660014E-4 0.11788880176994058 >1k 0.001085428145320028 0.8589247913004996 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3459 0.4971777723158653 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2479 0.3563179235533478 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 815 0.11714364973617526 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4373453955358927E-4 0.0 0.0 0.03190906778089682 0.0 2 1.4373453955358927E-4 0.0 0.0 0.13870383066921363 0.0 3 1.4373453955358927E-4 0.0 0.0 0.23399983039324332 0.0 4 1.4373453955358927E-4 0.0 0.0 0.47504265322461253 0.0 5 1.4373453955358927E-4 0.0 0.0 0.8020387307090281 0.0 6 1.4373453955358927E-4 0.0 0.0 1.5185554103836707 0.0 7 1.4373453955358927E-4 0.0 0.0 1.8471325678031756 0.0 8 1.4373453955358927E-4 0.0 0.0 2.748923068962395 0.0 9 1.4373453955358927E-4 0.0 0.0 3.25529985180969 0.0 10 1.4373453955358927E-4 0.0 0.0 4.03017275454309 0.0 11 1.4373453955358927E-4 0.0 0.0 4.603098629203696 0.0 12 1.4373453955358927E-4 0.0 0.0 5.080872238679827 0.0 13 1.4373453955358927E-4 0.0 0.0 5.333845028294144 0.0 14 1.4373453955358927E-4 0.0 0.0 5.429859700715942 0.0 15 1.4373453955358927E-4 0.0 0.0 5.519118849778721 0.0 16 1.4373453955358927E-4 0.0 0.0 5.699649431458028 0.0 17 1.4373453955358927E-4 0.0 0.0 5.88190482761198 0.0 18 1.4373453955358927E-4 0.0 0.0 6.160606099806389 0.0 19 1.4373453955358927E-4 0.0 0.0 6.274012651514171 0.0 20 2.8746907910717854E-4 0.0 0.0 6.414441296658028 0.0 21 2.8746907910717854E-4 0.0 0.0 6.580454689842424 0.0 22 2.8746907910717854E-4 0.0 0.0 6.742587250458873 0.0 23 2.8746907910717854E-4 0.0 0.0 6.929154682799432 0.0 24 2.8746907910717854E-4 0.0 0.0 7.076051382223199 0.0 25 2.8746907910717854E-4 0.0 0.0 7.198513209922858 0.0 26 2.8746907910717854E-4 0.0 0.0 7.31594432873814 0.0 27 2.8746907910717854E-4 0.0 0.0 7.438262421898244 0.0 28 2.8746907910717854E-4 0.0 0.0 7.552675115382901 0.0 29 2.8746907910717854E-4 0.0 0.0 7.686635706246847 0.0 30 2.8746907910717854E-4 0.0 0.0 7.88297708727705 0.0 31 2.8746907910717854E-4 0.0 0.0 8.023980670579121 0.0 32 2.8746907910717854E-4 0.0 0.0 8.153916694335566 0.0 33 2.8746907910717854E-4 0.0 0.0 8.283996452631564 0.0 34 2.8746907910717854E-4 0.0 0.0 8.421550406984348 0.0 35 2.8746907910717854E-4 0.0 0.0 8.59460679260687 0.0 36 2.8746907910717854E-4 0.0 0.0 8.737478924923138 0.0 37 2.8746907910717854E-4 0.0 0.0 8.887106580598424 0.0 38 2.8746907910717854E-4 0.0 0.0 9.040040130683444 0.0 39 2.8746907910717854E-4 0.0 0.0 9.19168006991248 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 20 7.031364E-4 45.000004 13 AACGTAG 30 2.1642609E-6 45.000004 1 TAATACG 40 6.8084773E-9 45.000004 1 CGTATGA 20 7.031364E-4 45.000004 27 ACGGGTA 40 6.8084773E-9 45.000004 5 TCTAGCG 20 7.031364E-4 45.000004 1 TAGCCGT 20 7.031364E-4 45.000004 44 ACGGGCC 30 2.1642609E-6 45.000004 5 ATGTACG 30 2.1642609E-6 45.000004 1 ACGATAT 20 7.031364E-4 45.000004 45 CGCTCTA 20 7.031364E-4 45.000004 12 CTACGAT 20 7.031364E-4 45.000004 43 TGTTACG 20 7.031364E-4 45.000004 1 TTACGAG 20 7.031364E-4 45.000004 1 ATCGGTA 20 7.031364E-4 45.000004 27 TCGAAGT 30 2.1642609E-6 45.000004 40 ATACGAG 45 3.8380676E-10 45.0 1 TACGTGG 45 3.8380676E-10 45.0 2 GTATGCG 65 0.0 41.53846 1 AATACGG 65 0.0 41.53846 2 >>END_MODULE