##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546664_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2405230 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.365723860088224 31.0 31.0 33.0 30.0 34.0 2 31.777767198978893 31.0 31.0 34.0 30.0 34.0 3 31.88022891781659 31.0 31.0 34.0 30.0 34.0 4 35.62572186443708 37.0 35.0 37.0 33.0 37.0 5 35.530268622959134 37.0 35.0 37.0 33.0 37.0 6 35.58724986799599 37.0 35.0 37.0 33.0 37.0 7 35.96112721028758 37.0 35.0 37.0 35.0 37.0 8 35.9466932476312 37.0 35.0 37.0 35.0 37.0 9 37.670942903589264 39.0 37.0 39.0 35.0 39.0 10 37.151294886559704 39.0 37.0 39.0 33.0 39.0 11 36.84369644483064 39.0 37.0 39.0 32.0 39.0 12 36.03654744036953 37.0 35.0 39.0 32.0 39.0 13 35.734574656062 37.0 35.0 39.0 31.0 39.0 14 36.71970622352124 38.0 35.0 41.0 31.0 41.0 15 37.01020359799271 38.0 35.0 41.0 32.0 41.0 16 37.13997621849054 38.0 35.0 41.0 32.0 41.0 17 37.083016593007734 38.0 35.0 41.0 32.0 41.0 18 37.01370471846767 38.0 35.0 41.0 32.0 41.0 19 36.92583744589915 38.0 35.0 41.0 32.0 41.0 20 36.77373515214761 38.0 35.0 41.0 32.0 41.0 21 36.6541752763769 38.0 35.0 41.0 32.0 41.0 22 36.53364626251959 38.0 35.0 40.0 31.0 41.0 23 36.47958823064738 38.0 35.0 40.0 31.0 41.0 24 36.36109561247781 38.0 35.0 40.0 31.0 41.0 25 36.26404751312764 37.0 35.0 40.0 31.0 41.0 26 36.11127376591843 37.0 35.0 40.0 31.0 41.0 27 36.0322235295585 37.0 35.0 40.0 31.0 41.0 28 36.00861705533359 37.0 35.0 40.0 31.0 41.0 29 36.047098614269736 37.0 35.0 40.0 31.0 41.0 30 36.031989040549135 37.0 35.0 40.0 31.0 41.0 31 35.920228834664464 37.0 35.0 40.0 30.0 41.0 32 35.756488984421445 37.0 35.0 40.0 30.0 41.0 33 35.6453370363749 37.0 35.0 40.0 30.0 41.0 34 35.52669391284825 37.0 35.0 40.0 29.0 41.0 35 35.43205680953589 37.0 35.0 40.0 29.0 41.0 36 35.26972929823759 37.0 34.0 40.0 28.0 41.0 37 35.1880132045584 37.0 34.0 40.0 27.0 41.0 38 35.15134436207764 37.0 34.0 40.0 27.0 41.0 39 35.102108738041686 37.0 34.0 40.0 27.0 41.0 40 34.9174440697979 36.0 34.0 40.0 26.0 41.0 41 34.88905551652025 36.0 34.0 40.0 26.0 41.0 42 34.828736544945805 36.0 34.0 40.0 26.0 41.0 43 34.7101603588846 36.0 34.0 40.0 26.0 41.0 44 34.541594358959436 36.0 34.0 40.0 25.0 41.0 45 34.42923005284318 35.0 34.0 40.0 24.0 41.0 46 34.432666730416635 35.0 34.0 40.0 24.0 41.0 47 34.42154845898313 35.0 34.0 40.0 25.0 41.0 48 34.33573837013508 35.0 34.0 40.0 24.0 41.0 49 34.305743317686876 36.0 34.0 40.0 24.0 41.0 50 34.176739854400616 35.0 34.0 40.0 24.0 41.0 51 33.78380196488485 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 4.0 11 1.0 12 5.0 13 5.0 14 22.0 15 47.0 16 167.0 17 466.0 18 1134.0 19 2158.0 20 3662.0 21 5936.0 22 9079.0 23 13415.0 24 19625.0 25 27615.0 26 36005.0 27 42284.0 28 45986.0 29 52340.0 30 61932.0 31 74215.0 32 92470.0 33 119246.0 34 211556.0 35 381697.0 36 163336.0 37 193824.0 38 287579.0 39 558913.0 40 503.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.96442751836623 24.655105748722576 29.382928035988243 13.997538696922957 2 30.806409366256034 26.465951281166454 29.195586284887515 13.532053067689992 3 27.96505947456168 26.177330234530586 31.589120375182418 14.268489915725317 4 24.607334849473855 29.409245685443803 30.688998557310526 15.294420907771814 5 23.136747837005192 31.963138660336014 30.24400992836444 14.656103574294349 6 21.277299884002776 40.086311911958525 27.90643722221991 10.729950981818787 7 85.84796464371391 5.345060555539387 6.950146139870199 1.8568286608765066 8 86.49721648241541 4.276430944234024 6.310623100493508 2.9157294728570657 9 81.16188472620081 6.317649455561422 9.321146002669185 3.1993198155685736 10 49.21038736420218 25.689518258129162 13.795021681918154 11.30507269575051 11 43.139616585524045 20.875217754643007 23.278272763935256 12.70689289589769 12 38.673058293801425 21.54313724674979 25.039850658772757 14.743953800676026 13 21.260835762068492 38.5300366285137 25.343023328330343 14.866104281087464 14 15.340113003746003 41.67085891993697 27.027061861027846 15.961966215289184 15 13.740016547274065 24.604424524889513 47.133288708356375 14.522270219480049 16 15.633432145782317 20.112671137479577 45.63160279890073 18.62229391783738 17 16.08079061046137 20.92386175126703 29.33973050394349 33.65561713432811 18 20.820004739671464 23.572340275150403 35.07535661870175 20.532298366476386 19 27.988591527629374 24.724205169567984 26.868698627574076 20.41850467522856 20 29.84820578489375 23.465074026184606 25.707063357766202 20.97965683115544 21 21.388806891648613 28.81578892663072 28.356830739679783 21.438573442040887 22 22.360855302819274 25.49880884572369 26.042249597751564 26.098086253705468 23 18.774046556878137 30.642724396419467 25.332504583761224 25.250724462941175 24 19.61999476141575 24.852841516195955 37.76507859955181 17.762085122836485 25 17.21265741737796 25.638047089051774 35.362273046652504 21.78702244691776 26 16.091434083226968 34.717137238434574 28.33766417348861 20.85376450484985 27 17.594658307105764 33.944612365553404 29.034021694390972 19.426707632949864 28 15.746519043916798 29.48025760530178 36.91002523667175 17.863198114109668 29 15.792003259563533 25.615180253031934 36.24800954586463 22.344806941539893 30 18.611193108351383 31.284575695463634 30.967433467901202 19.13679772828378 31 27.35285191021233 27.65061969125614 25.58067211867472 19.41585627985681 32 27.12971316672418 27.86864457868894 27.75738702743605 17.244255227150834 33 26.330538035863515 27.38453287211618 26.15309138834955 20.13183770367075 34 19.178789554429308 28.22175010290076 29.104409973266588 23.49505036940334 35 20.23382379231924 25.97057246084574 31.448510121693147 22.347093625141877 36 28.039480631789893 24.669906828037234 28.412334787109756 18.878277753063117 37 20.548180423493804 30.731738752634886 30.577325245402726 18.142755578468588 38 20.298973486943037 32.0735646902791 25.555352294790936 22.072109527986928 39 21.668530660269496 29.79511314926223 28.12824553161236 20.40811065885591 40 24.306532015649232 25.945834701878823 27.046394731480984 22.701238550990965 41 17.68176016430861 24.77442905668065 28.627407773892728 28.916403005118013 42 22.139878514736637 25.293256777938076 26.099624568128622 26.46724013919667 43 21.974156317691033 25.22419893315816 28.499769252836526 24.30187549631428 44 20.10073880668377 29.82122291839034 28.687318884264705 21.390719390661182 45 16.85285814662215 35.57298054655896 25.389921130203764 22.184240176615123 46 22.379938716879465 31.780162396111805 26.341223084694604 19.498675802314125 47 21.884310440165805 27.582351791720544 27.196733784295056 23.336603983818595 48 22.645983959953934 24.43404580850896 30.920868274551705 21.999101956985402 49 21.262332500426155 23.639153012393827 32.51676554840909 22.58174893877093 50 19.980916585939806 31.14226082328925 28.096730873970472 20.780091716800474 51 18.697130835720493 32.21899776736528 25.626987855631274 23.456883541282956 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3053.0 1 3704.0 2 4355.0 3 11811.0 4 19267.0 5 14321.5 6 9376.0 7 10326.5 8 11277.0 9 12260.5 10 13244.0 11 13458.5 12 13673.0 13 13670.5 14 13668.0 15 13336.5 16 13005.0 17 12317.5 18 11630.0 19 11529.0 20 11428.0 21 13039.0 22 14650.0 23 14208.5 24 13767.0 25 14286.0 26 18481.0 27 22157.0 28 24162.5 29 26168.0 30 30952.5 31 35737.0 32 39772.5 33 43808.0 34 52256.0 35 60704.0 36 62263.0 37 63822.0 38 79954.5 39 96087.0 40 133835.0 41 171583.0 42 202851.5 43 234120.0 44 242210.5 45 250301.0 46 247115.0 47 243929.0 48 232982.0 49 222035.0 50 199628.0 51 177221.0 52 161812.5 53 146404.0 54 126068.0 55 105732.0 56 92734.5 57 79737.0 58 73952.5 59 68168.0 60 61313.0 61 54458.0 62 48352.5 63 42247.0 64 36259.0 65 30271.0 66 26266.5 67 22262.0 68 17718.5 69 13175.0 70 11217.0 71 9259.0 72 8564.0 73 7869.0 74 6377.0 75 3774.0 76 2663.0 77 2313.0 78 1963.0 79 1278.5 80 594.0 81 501.5 82 409.0 83 281.0 84 153.0 85 108.0 86 63.0 87 40.5 88 18.0 89 22.5 90 27.0 91 14.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2405230.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.3538189073513 #Duplication Level Percentage of deduplicated Percentage of total 1 81.14521336818022 15.70469764726142 2 7.652111432241108 2.96195157836934 3 2.5466045781181683 1.4785957150059237 4 1.2304455481870198 0.9525528125987271 5 0.7827268617652606 0.7574376968262125 6 0.5062186679522821 0.587835865624144 7 0.39941251726067784 0.5411110269874738 8 0.31750505295112313 0.49159482375880187 9 0.25722160167888514 0.4480398268156792 >10 2.7293023156986465 12.374058683197198 >50 1.0892062418751232 15.411814943205258 >100 1.330160174821711 45.42091902051972 >500 0.011704195633908735 1.4164686385155705 >1k 0.00173395490872722 0.5370222853755541 >5k 0.0 0.0 >10k+ 4.33488727181805E-4 0.915899435938904 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11100 0.46149432694586384 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 10734 0.44627748697629754 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03155623370737934 0.0 2 0.0 0.0 0.0 0.17075290096996962 0.0 3 0.0 0.0 0.0 0.2968115315375245 0.0 4 0.0 0.0 0.0 0.5828132860474882 0.0 5 0.0 0.0 0.0 0.9697201515031827 0.0 6 0.0 0.0 0.0 1.7333893224348607 0.0 7 0.0 0.0 0.0 2.1053703803794233 0.0 8 0.0 0.0 0.0 3.0893095462803974 0.0 9 0.0 0.0 0.0 3.6247261176685805 0.0 10 0.0 0.0 0.0 4.39525533940621 0.0 11 0.0 0.0 0.0 4.928593107519863 0.0 12 0.0 0.0 0.0 5.397529550188548 0.0 13 0.0 0.0 0.0 5.649522083127185 0.0 14 0.0 0.0 0.0 5.749969857352519 0.0 15 0.0 0.0 0.0 5.843308124378957 0.0 16 0.0 0.0 0.0 6.029568897776928 0.0 17 0.0 0.0 0.0 6.217409561663541 0.0 18 0.0 0.0 0.0 6.527068097437667 0.0 19 0.0 0.0 0.0 6.645559884085929 0.0 20 0.0 0.0 0.0 6.7902445919932815 0.0 21 0.0 0.0 0.0 6.953222768716505 0.0 22 0.0 0.0 0.0 7.116117793308748 0.0 23 0.0 0.0 0.0 7.300341339497678 0.0 24 0.0 0.0 0.0 7.440868440855968 0.0 25 0.0 0.0 0.0 7.551751807519447 0.0 26 0.0 0.0 0.0 7.672197669245769 0.0 27 0.0 0.0 0.0 7.790232119173634 0.0 28 0.0 0.0 0.0 7.902736952391248 0.0 29 0.0 0.0 0.0 8.027007812142706 0.0 30 0.0 0.0 0.0 8.223413145520388 0.0 31 0.0 0.0 0.0 8.372463340304254 0.0 32 0.0 0.0 0.0 8.50396843545108 0.0 33 0.0 0.0 0.0 8.633436303388866 0.0 34 0.0 0.0 0.0 8.769972102460056 0.0 35 0.0 0.0 0.0 8.940267666709628 0.0 36 0.0 0.0 0.0 9.08491079855149 0.0 37 0.0 0.0 0.0 9.229096593672955 0.0 38 0.0 0.0 0.0 9.374404942562666 0.0 39 0.0 0.0 0.0 9.514308402938596 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCGAA 20 7.034825E-4 45.000004 23 GTAATCG 20 7.034825E-4 45.000004 9 TACGCTA 30 2.1664946E-6 45.000004 10 CGTAGTC 40 6.8212103E-9 45.000004 11 CTACCGT 20 7.034825E-4 45.000004 29 CACGTAG 30 2.1664946E-6 45.000004 1 TAGTCGA 40 6.8212103E-9 45.000004 16 ACGACCG 20 7.034825E-4 45.000004 38 CGTGCAA 25 3.892082E-5 45.0 25 CAAATCG 25 3.892082E-5 45.0 19 GAACGTA 25 3.892082E-5 45.0 36 CAATCGA 35 1.2126657E-7 45.0 18 TTCGATC 35 1.2126657E-7 45.0 15 TTTAGCG 230 0.0 43.043476 1 CCAACGG 80 0.0 42.187504 2 CGTAAGG 385 0.0 42.077923 2 TAGTCCG 75 0.0 42.0 1 GTTCCGA 140 0.0 41.785713 9 TCTAGCG 65 0.0 41.53846 1 CGTTTTT 7725 0.0 41.213593 1 >>END_MODULE