SRR1546663_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546663_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2721480
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13411	0.4927833384775931	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5752	0.21135558593118453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	25	3.8922175E-5	45.0	43
CGTAGTC	25	3.8922175E-5	45.0	21
ATATACG	35	1.2127566E-7	45.0	1
TATAGCG	200	0.0	42.75	1
TAATGCG	50	1.0822987E-9	40.5	1
CGTTTTT	8945	0.0	40.095028	1
ATAGCGG	580	0.0	39.56897	2
GGCGTAA	80	0.0	39.375	8
AGGGCGA	2895	0.0	38.782383	6
TACGGGA	495	0.0	38.636364	4
TATACGA	35	6.251441E-6	38.571426	37
TACCGTT	35	6.251441E-6	38.571426	10
TAGGGCG	1385	0.0	38.501804	5
CACAACG	450	0.0	38.5	12
ACGGGTA	375	0.0	38.4	5
CGTTCGA	95	0.0	37.894737	14
TAGGGAC	1585	0.0	37.618298	5
CGTATTA	30	1.140332E-4	37.500004	41
CGGTACG	30	1.140332E-4	37.500004	37
ACGCGTA	30	1.140332E-4	37.500004	36