##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546661_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 352414 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28635922522942 31.0 31.0 33.0 30.0 34.0 2 31.671133950410596 31.0 31.0 34.0 30.0 34.0 3 31.650147269972248 31.0 31.0 34.0 30.0 34.0 4 35.510328761059434 37.0 35.0 37.0 33.0 37.0 5 35.45623896893994 37.0 35.0 37.0 33.0 37.0 6 35.53074225201042 37.0 35.0 37.0 33.0 37.0 7 35.95593818633766 37.0 35.0 37.0 35.0 37.0 8 35.94993104700721 37.0 35.0 37.0 35.0 37.0 9 37.67772846708701 39.0 37.0 39.0 35.0 39.0 10 37.05322149517329 39.0 37.0 39.0 33.0 39.0 11 36.80789923215309 39.0 37.0 39.0 32.0 39.0 12 36.28081177251755 38.0 35.0 39.0 32.0 39.0 13 36.136853246465805 38.0 35.0 39.0 32.0 39.0 14 37.21629957947187 39.0 35.0 41.0 32.0 41.0 15 37.41243253673237 39.0 35.0 41.0 32.0 41.0 16 37.44821999126028 39.0 35.0 41.0 32.0 41.0 17 37.390515132769984 39.0 35.0 41.0 32.0 41.0 18 37.2053720907796 39.0 35.0 41.0 32.0 41.0 19 37.074401130488575 38.0 35.0 41.0 32.0 41.0 20 36.83887700261624 38.0 35.0 41.0 32.0 41.0 21 36.74106874301248 38.0 35.0 41.0 32.0 41.0 22 36.64220490672902 38.0 35.0 40.0 31.0 41.0 23 36.56520172297355 38.0 35.0 40.0 31.0 41.0 24 36.403891445856296 38.0 35.0 40.0 31.0 41.0 25 36.29450589363646 38.0 35.0 40.0 31.0 41.0 26 36.12081245353476 38.0 35.0 40.0 31.0 41.0 27 36.03545829620844 37.0 35.0 40.0 30.0 41.0 28 35.97100852974059 37.0 35.0 40.0 30.0 41.0 29 35.98347965744834 37.0 35.0 40.0 30.0 41.0 30 35.904362482761755 37.0 35.0 40.0 30.0 41.0 31 35.75646824473488 37.0 35.0 40.0 30.0 41.0 32 35.48675705278451 37.0 34.0 40.0 29.0 41.0 33 35.1775837509293 38.0 34.0 40.0 26.0 41.0 34 34.87287678696079 37.0 34.0 40.0 24.0 41.0 35 34.60590952686329 37.0 34.0 40.0 23.0 41.0 36 34.41619231926087 37.0 34.0 40.0 22.0 41.0 37 34.34464294835052 37.0 34.0 40.0 22.0 41.0 38 34.270051700556735 37.0 33.0 40.0 22.0 41.0 39 34.17732836947454 37.0 33.0 40.0 21.0 41.0 40 34.06099644168506 37.0 33.0 40.0 20.0 41.0 41 34.023906541737844 37.0 33.0 40.0 20.0 41.0 42 33.936520683060266 37.0 33.0 40.0 19.0 41.0 43 33.82334129745129 37.0 33.0 40.0 18.0 41.0 44 33.698936478119485 36.0 33.0 40.0 18.0 41.0 45 33.59034544598115 36.0 33.0 40.0 18.0 41.0 46 33.56014800774089 36.0 33.0 40.0 18.0 41.0 47 33.54089792119496 36.0 33.0 40.0 18.0 41.0 48 33.43141021639322 36.0 33.0 40.0 18.0 41.0 49 33.35234979314102 36.0 33.0 40.0 18.0 41.0 50 33.23289369888824 35.0 33.0 40.0 18.0 41.0 51 32.87938333891389 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 0.0 13 1.0 14 4.0 15 6.0 16 32.0 17 78.0 18 188.0 19 390.0 20 698.0 21 1102.0 22 1733.0 23 2694.0 24 3975.0 25 6232.0 26 8230.0 27 8932.0 28 8292.0 29 8166.0 30 9158.0 31 10787.0 32 13062.0 33 16461.0 34 26839.0 35 43060.0 36 26229.0 37 31054.0 38 44997.0 39 79958.0 40 54.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.579051910537036 23.459624192001453 26.58520944116863 18.376114456292882 2 34.72279761870981 24.348067897416108 28.228163466831624 12.700971017042455 3 26.68594323721532 23.776297195911628 36.085115801301875 13.452643765571176 4 22.843587371670818 27.137684654979655 36.14810989347756 13.870618079871969 5 21.092805620662062 31.259541334907237 34.654128383094886 12.993524661335815 6 18.758902881270323 39.61108242010817 31.929492017910754 9.700522680710755 7 83.21150692083742 3.7262991822118305 11.66497358220729 1.3972203147434552 8 83.77022479243162 2.947953259518634 11.165844716725214 2.1159772313245218 9 78.42055082942221 5.126640825846874 13.675109388389792 2.7776989563411214 10 41.14592496325344 25.7064134796007 21.115222437247102 12.032439119898756 11 35.456593665404895 23.354350281203356 27.150169970546006 14.038886082845744 12 30.196303211563674 22.190662118985056 31.226909260131553 16.38612540931972 13 20.50854960359123 33.5940115886429 31.410216393219336 14.487222414546528 14 16.994217028835404 35.701192347636585 32.37754459243957 14.927046031088437 15 16.228072664536597 24.829320061064543 44.73204810251579 14.21055917188307 16 17.775400523248226 21.959400023835602 43.11803730839297 17.147162144523204 17 17.91330650882201 22.940064810138075 32.23623352080224 26.910395160237677 18 20.61297224287344 24.645729170804792 35.84789480554121 18.89340378078056 19 25.026815052750457 26.653594919611596 30.040236766984286 18.279353260653664 20 26.3862956636229 24.703331876713182 30.0666261839768 18.843746275687117 21 21.330594130766656 28.15495411646529 31.83840596571078 18.67604578705727 22 21.95429239474028 25.176922596718633 30.236596729982352 22.63218827855874 23 19.380047330696286 29.063544581089285 29.616871066416206 21.939537021798223 24 19.756025583546624 26.05685358697441 37.49255137423598 16.69456945524298 25 18.72116317739931 27.333193346461833 34.749754550046255 19.195888926092607 26 18.08412832634345 31.909912773045342 30.930666772602677 19.075292128008535 27 18.200468766848083 30.837026905855048 32.270568138609704 18.69193618868717 28 17.46071381954179 28.209151736310133 37.48318738756122 16.846947056586856 29 17.790439653362238 25.673213890481083 36.33964598455226 20.19670047160442 30 19.525614759913058 28.669405869233344 33.740714046547524 18.06426532430607 31 25.01461349435607 26.686226994387287 29.441225376971403 18.857934134285244 32 25.82161889141748 26.563643896099475 29.851254490457247 17.7634827220258 33 23.776864710255552 27.887371103304638 28.692673957334268 19.64309022910554 34 20.36014460265483 27.62092311883183 30.36826005777296 21.65067222074038 35 19.898187926699848 27.65242016491967 31.690000964774384 20.7593909436061 36 25.536159176423183 27.594817459011278 27.905247805138274 18.963775559427265 37 20.40696453602865 30.799854716327957 30.795598358748517 17.997582388894877 38 19.93082000147554 32.22545074826766 27.63482722025799 20.208902029998807 39 20.345389229712783 31.645451088776266 28.499435323227797 19.509724358283158 40 21.967345224650554 28.576049759657675 27.933907279506485 21.522697736185282 41 18.01999920547992 27.22167677788056 28.97926870101642 25.7790553156231 42 21.708558683820733 28.51674451071751 27.04007218782455 22.734624617637213 43 21.635633090626367 28.165453131827906 28.252566583620403 21.946347193925327 44 20.130585050537153 31.445402282542688 28.21936699450079 20.204645672419367 45 19.225115914804746 33.80881576781854 25.693928164034347 21.272140153342374 46 22.168812816743944 30.644639543264457 26.907273831346085 20.279273808645513 47 21.020447541811617 28.759924407089386 28.17481711850267 22.04481093259632 48 21.86235507102442 26.85108991129751 30.14664570647023 21.13990931120784 49 21.377981578484395 26.26030747927154 30.144943163438455 22.21676777880561 50 19.809088174703614 31.058925014329734 28.63081489384644 20.501171917120207 51 19.049186468187983 31.28536323755583 27.029856929633894 22.63559336462229 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 401.0 1 407.5 2 414.0 3 3163.5 4 5913.0 5 4225.0 6 2537.0 7 2707.0 8 2877.0 9 3167.0 10 3457.0 11 3749.5 12 4042.0 13 4072.5 14 4103.0 15 4023.5 16 3944.0 17 3689.5 18 3435.0 19 3221.5 20 3008.0 21 2917.5 22 2827.0 23 2729.0 24 2631.0 25 2702.0 26 3106.0 27 3439.0 28 3816.0 29 4193.0 30 4876.0 31 5559.0 32 6364.0 33 7169.0 34 8180.0 35 9191.0 36 10326.0 37 11461.0 38 12977.5 39 14494.0 40 18049.0 41 21604.0 42 25255.5 43 28907.0 44 29898.5 45 30890.0 46 31875.5 47 32861.0 48 31407.5 49 29954.0 50 28040.5 51 26127.0 52 23773.0 53 21419.0 54 18611.5 55 15804.0 56 13986.5 57 12169.0 58 10840.0 59 9511.0 60 8470.0 61 7429.0 62 6388.5 63 5348.0 64 4703.0 65 4058.0 66 3490.0 67 2922.0 68 2461.5 69 2001.0 70 1575.0 71 1149.0 72 1053.0 73 957.0 74 783.0 75 462.0 76 315.0 77 285.0 78 255.0 79 195.0 80 135.0 81 107.0 82 79.0 83 48.5 84 18.0 85 13.5 86 9.0 87 8.5 88 8.0 89 5.0 90 2.0 91 3.0 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 352414.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.308548782531226 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21570722123859 31.399588693998275 2 8.315472319167332 7.036311325305585 3 4.001461077780974 5.07888033632089 4 2.584832310344289 4.374420155874569 5 1.8450426672739082 3.9030538847104843 6 1.394922747797586 3.5410294273834007 7 1.1328480425566776 3.3550409670192938 8 0.9048831001526807 3.062743262823822 9 0.7783915854951375 2.9639356530149565 >10 4.787365148923365 32.609165575128 >50 0.02829480567788885 0.7499052641845944 >100 0.009431601892629617 0.6387448487410399 >500 6.736858494735441E-4 0.16731067657786275 >1k 6.736858494735441E-4 1.119869928917245 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3929 1.1148819286407465 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 587 0.16656545994200003 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05930524894016696 0.0 2 0.0 0.0 0.0 0.1847259189476014 0.0 3 0.0 0.0 0.0 0.2894323154017718 0.0 4 0.0 0.0 0.0 0.4613891616110597 0.0 5 0.0 0.0 0.0 0.7471326337773188 0.0 6 0.0 0.0 0.0 1.414529502233169 0.0 7 0.0 0.0 0.0 1.7510655081807194 0.0 8 0.0 0.0 0.0 2.696828162331803 0.0 9 0.0 0.0 0.0 3.09266941721952 0.0 10 0.0 0.0 0.0 3.6091074701913093 0.0 11 0.0 0.0 0.0 3.9467785048267094 0.0 12 0.0 0.0 0.0 4.257208850953708 0.0 13 0.0 0.0 0.0 4.433705811914396 0.0 14 0.0 0.0 0.0 4.530183250381653 0.0 15 0.0 0.0 0.0 4.605095143779759 0.0 16 0.0 0.0 0.0 4.7398798004619564 0.0 17 0.0 0.0 0.0 4.895662487869381 0.0 18 0.0 0.0 0.0 5.159272900622563 0.0 19 0.0 0.0 0.0 5.273059526579535 0.0 20 0.0 0.0 0.0 5.387981181224355 0.0 21 0.0 0.0 0.0 5.526738438314029 0.0 22 0.0 0.0 0.0 5.685074940269115 0.0 23 0.0 0.0 0.0 5.871787159420454 0.0 24 0.0 0.0 0.0 6.007139330446577 0.0 25 0.0 0.0 0.0 6.134830057829712 0.0 26 0.0 0.0 0.0 6.257696913289483 0.0 27 0.0 0.0 0.0 6.389360241080094 0.0 28 0.0 0.0 0.0 6.524996169278179 0.0 29 0.0 0.0 0.0 6.694115443767841 0.0 30 0.0 0.0 0.0 6.9364440686238344 0.0 31 0.0 0.0 0.0 7.095348084922846 0.0 32 0.0 0.0 0.0 7.2585084588012965 0.0 33 0.0 0.0 0.0 7.419966289647971 0.0 34 0.0 0.0 0.0 7.604975965767535 0.0 35 0.0 0.0 0.0 7.800484657249712 0.0 36 0.0 0.0 0.0 7.9781166468982505 0.0 37 0.0 0.0 0.0 8.167950194941177 0.0 38 0.0 0.0 0.0 8.352108599544854 0.0 39 0.0 0.0 0.0 8.520092845346666 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCGG 30 2.1612013E-6 45.000004 45 CGGGATA 30 2.1612013E-6 45.000004 6 TCGTTTG 25 3.8852828E-5 45.0 1 CGACCCC 55 1.8189894E-12 45.0 20 ATTCGGC 25 3.8852828E-5 45.0 17 TACGGGT 20 7.026623E-4 45.0 4 TGTTGCG 20 7.026623E-4 45.0 1 ACTACGG 20 7.026623E-4 45.0 2 CATACGA 35 1.2087185E-7 45.0 18 GCTACGA 25 3.8852828E-5 45.0 10 AGCTACG 25 3.8852828E-5 45.0 9 CGTTTGG 40 6.7921064E-9 45.0 2 TGATGCG 25 3.8852828E-5 45.0 1 CGTTTTT 3200 0.0 43.453125 1 TGGGCGA 150 0.0 42.000004 6 ACGGGAT 70 0.0 41.785713 5 ATGGGCG 65 0.0 41.53846 5 TTACGGG 115 0.0 41.086956 3 CTCGTCC 55 6.002665E-11 40.909092 37 TACGGGA 95 0.0 40.263157 4 >>END_MODULE