SRR1546659_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546659_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2004162
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10795	0.5386291128162295	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3275	0.16340994390673008	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTAAG	20	7.034545E-4	45.0	1
CGTTTTT	7075	0.0	40.92933	1
GTTTACG	50	1.0822987E-9	40.5	1
TCGATAG	95	0.0	40.263157	1
CACGACC	765	0.0	39.11765	27
TGATTCG	365	0.0	38.835617	15
CGGTCTA	140	0.0	38.571426	31
GACGGGT	450	0.0	38.5	4
TAGGGTC	875	0.0	38.314285	5
AACACGT	705	0.0	37.978725	41
GCGATCG	155	0.0	37.74194	9
TGACGGG	875	0.0	37.54286	3
ACGGGTA	240	0.0	37.500004	5
ATAGGGC	1005	0.0	37.388058	4
GACGGGA	910	0.0	37.335163	4
TAGGGCG	880	0.0	37.329544	5
CGACGGT	145	0.0	37.241383	28
ACGGTCT	145	0.0	37.241383	30
AGACACG	805	0.0	37.173916	24
GACACGA	815	0.0	36.993866	25