##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546659_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2004162 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.429836510222227 31.0 31.0 33.0 30.0 34.0 2 31.851899696731103 31.0 31.0 34.0 30.0 34.0 3 31.97760759858734 33.0 31.0 34.0 30.0 34.0 4 35.72632551659996 37.0 35.0 37.0 33.0 37.0 5 35.65426697043453 37.0 35.0 37.0 33.0 37.0 6 35.71632283218622 37.0 35.0 37.0 33.0 37.0 7 36.03713472264218 37.0 35.0 37.0 35.0 37.0 8 36.01897650988293 37.0 35.0 37.0 35.0 37.0 9 37.75763735666079 39.0 38.0 39.0 35.0 39.0 10 37.175330137982854 39.0 37.0 39.0 33.0 39.0 11 37.00104981533429 39.0 37.0 39.0 33.0 39.0 12 36.56581453994238 39.0 35.0 39.0 33.0 39.0 13 36.43117322851147 39.0 35.0 39.0 32.0 39.0 14 37.522695770102416 40.0 35.0 41.0 33.0 41.0 15 37.68366229875629 40.0 35.0 41.0 33.0 41.0 16 37.71780624520373 40.0 35.0 41.0 33.0 41.0 17 37.641543947046195 39.0 35.0 41.0 33.0 41.0 18 37.5533529724643 39.0 36.0 41.0 33.0 41.0 19 37.5037661626156 39.0 36.0 41.0 33.0 41.0 20 37.382862263629384 39.0 35.0 41.0 32.0 41.0 21 37.28934936397357 39.0 35.0 41.0 32.0 41.0 22 37.183933234938095 39.0 35.0 41.0 32.0 41.0 23 37.09607456882228 39.0 35.0 41.0 32.0 41.0 24 36.98528013204521 39.0 35.0 41.0 32.0 41.0 25 36.89050236457931 38.0 35.0 41.0 32.0 41.0 26 36.75980584403855 38.0 35.0 41.0 31.0 41.0 27 36.67993904684352 38.0 35.0 41.0 31.0 41.0 28 36.59849902353203 38.0 35.0 40.0 31.0 41.0 29 36.64675759743973 38.0 35.0 41.0 31.0 41.0 30 36.63125685448581 38.0 35.0 41.0 31.0 41.0 31 36.57046536158255 38.0 35.0 41.0 31.0 41.0 32 36.48943298994792 38.0 35.0 41.0 31.0 41.0 33 36.37217300797041 38.0 35.0 41.0 30.0 41.0 34 36.245943192217 38.0 35.0 41.0 30.0 41.0 35 36.137460444814344 38.0 35.0 41.0 30.0 41.0 36 36.019819256127995 38.0 35.0 41.0 30.0 41.0 37 35.96323151521683 38.0 35.0 41.0 30.0 41.0 38 35.88865421058777 38.0 35.0 41.0 29.0 41.0 39 35.80848953328124 38.0 35.0 41.0 29.0 41.0 40 35.67943359868114 38.0 35.0 40.0 29.0 41.0 41 35.63653686678023 38.0 35.0 40.0 29.0 41.0 42 35.55933402589212 38.0 35.0 40.0 28.0 41.0 43 35.44236094686956 38.0 35.0 40.0 28.0 41.0 44 35.31133710747933 38.0 34.0 40.0 27.0 41.0 45 35.193441947307655 37.0 34.0 40.0 27.0 41.0 46 35.15259045925429 37.0 34.0 40.0 27.0 41.0 47 35.11588933429533 37.0 34.0 40.0 27.0 41.0 48 35.026393574970484 37.0 34.0 40.0 27.0 41.0 49 34.94561567378286 37.0 34.0 40.0 27.0 41.0 50 34.859838176754174 37.0 34.0 40.0 26.0 41.0 51 34.487124294343474 36.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 5.0 10 1.0 11 5.0 12 8.0 13 9.0 14 20.0 15 45.0 16 111.0 17 240.0 18 617.0 19 1280.0 20 2289.0 21 3591.0 22 5741.0 23 8557.0 24 12798.0 25 18905.0 26 25645.0 27 29923.0 28 32468.0 29 36618.0 30 43381.0 31 53486.0 32 68056.0 33 87906.0 34 147646.0 35 233768.0 36 151598.0 37 194572.0 38 292985.0 39 551572.0 40 316.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.16170948256678 23.449701171861356 28.299708307013105 14.088881038558759 2 32.06307673730966 25.14113130575273 29.074645662376597 13.721146294561018 3 29.489332698654103 25.319260618652585 31.54650172990008 13.644904952793238 4 25.140332967095475 28.235242460439824 31.32900434196437 15.295420230500328 5 22.626763704730458 32.36105664112981 29.99263532588683 15.019544328252907 6 20.69787771647202 41.239131367623976 27.25208840403121 10.810902511872793 7 88.11213863949122 3.778087799289678 6.54767428980292 1.562099271416183 8 88.48456362310033 3.1070841578674777 6.257727668721391 2.1506245503108032 9 82.64726104975546 5.119646016639373 8.981409686442513 3.2516832471626547 10 40.26520810193986 27.27878285288315 18.854713341536264 13.601295703640723 11 34.89024340347736 25.05740553907319 23.892779126637468 16.159571930811982 12 31.21783568394172 23.821577297643604 27.024212613551203 17.93637440486348 13 22.748660038459963 31.851467096971202 28.26837351471588 17.131499349852955 14 19.32209072919255 34.320079913699594 29.15163544663555 17.206193910472305 15 19.23522150405007 24.70354192924524 39.24078991618442 16.820446650520267 16 20.556921047300566 22.502222874198793 37.88561004549532 19.055246033005314 17 20.81927508854075 23.04065240235071 29.098795406758537 27.04127710235001 18 23.052128520548738 23.86603478161945 32.68533182447327 20.39650487335854 19 27.19760179067361 25.914172606805234 27.20738143922497 19.68084416329618 20 28.562760894578382 24.944839788400337 26.173882151243262 20.318517165778015 21 24.567624772847704 26.84094399554527 28.516806525620186 20.07462470598684 22 24.041419805384994 24.321736466413395 27.580006007498397 24.056837720703218 23 21.528698777843307 28.08146247658622 26.94143487402715 23.44840387154332 24 21.1916002798177 25.97584426807813 33.615096983178006 19.217458468926164 25 20.833595288205245 26.51512203105338 31.600389589264736 21.050893091476638 26 19.99708606390102 30.645726243686887 28.168680974891252 21.188506717520838 27 20.319465192933507 29.515378497347022 29.2207915328202 20.94436477689927 28 19.060634818941782 28.15685558353067 33.54484318133964 19.237666416187913 29 19.880827996938372 25.468549947559126 32.89160257504134 21.759019480461163 30 21.055234057925457 28.169279728884195 31.50019808777933 19.27528812541102 31 25.868517614843512 26.96817921904517 26.822931479590974 20.34037168652035 32 25.810837646856893 26.453150992784018 28.223067795916695 19.512943564442395 33 24.742460938786383 27.07465763745645 27.39963136712501 20.78325005663215 34 20.792780224353123 28.38258583886931 29.090113473860896 21.73452046291667 35 20.7722729000949 27.574517429229772 30.42059474234119 21.232614928334137 36 25.379984252769987 28.145678842329115 26.95884863598851 19.515488268912392 37 21.687218897474356 29.7273873070141 28.98298640529059 19.60240739022095 38 21.81769737176935 30.86062903098652 26.695995633087545 20.62567796415659 39 22.25887927223448 29.391785693970846 27.15823371563776 21.191101318156917 40 23.20865279353665 27.431864290411657 27.53734478550137 21.822138130550325 41 19.966549610261048 26.32561639228765 28.650178977547725 25.057655019903578 42 22.99839034968231 27.05983847613117 26.56866061725549 23.373110556931024 43 22.601965310189495 26.565417366460398 27.852538866618566 22.980078456731544 44 21.568116749045238 29.110071940292254 28.383783346855196 20.93802796380732 45 20.29351918657274 31.00882064423934 26.99163041710201 21.70602975208591 46 22.553865406089926 29.572010645845992 27.502217884582187 20.371906063481894 47 21.88455823431439 28.50503103042568 28.267525279892542 21.34288545536738 48 23.453393488151157 26.17837280619032 29.154479528102016 21.213754177556503 49 22.169615031120237 26.354107103118412 29.621906811924386 21.854371053836967 50 21.090360958844645 29.833117282934214 28.369014081695994 20.70750767652515 51 20.514160032971386 30.601418448209277 26.98853685480515 21.895884664014186 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1979.0 1 2398.5 2 2818.0 3 10721.5 4 18625.0 5 13208.0 6 7791.0 7 7909.5 8 8028.0 9 8670.0 10 9312.0 11 9413.5 12 9515.0 13 9700.0 14 9885.0 15 9484.0 16 9083.0 17 8862.5 18 8642.0 19 8784.5 20 8927.0 21 8877.0 22 8827.0 23 10461.5 24 12096.0 25 13496.5 26 16757.5 27 18618.0 28 22457.0 29 26296.0 30 31472.0 31 36648.0 32 41579.0 33 46510.0 34 52862.5 35 59215.0 36 63591.5 37 67968.0 38 79123.5 39 90279.0 40 106343.0 41 122407.0 42 139214.0 43 156021.0 44 167970.0 45 179919.0 46 178997.5 47 178076.0 48 166942.5 49 155809.0 50 147853.0 51 139897.0 52 129739.0 53 119581.0 54 109938.0 55 100295.0 56 91813.0 57 83331.0 58 76000.0 59 68669.0 60 63074.0 61 57479.0 62 52351.0 63 47223.0 64 41496.5 65 35770.0 66 32474.5 67 29179.0 68 24219.0 69 19259.0 70 15940.0 71 12621.0 72 10921.0 73 9221.0 74 7539.5 75 4854.5 76 3851.0 77 2790.5 78 1730.0 79 1510.0 80 1290.0 81 863.5 82 437.0 83 292.5 84 148.0 85 109.0 86 70.0 87 55.5 88 41.0 89 27.0 90 13.0 91 10.0 92 7.0 93 4.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2004162.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.425245256518313 #Duplication Level Percentage of deduplicated Percentage of total 1 77.6777321635179 16.642644625735116 2 6.121715286619063 2.623185028127814 3 2.3147413183666488 1.4878170135420594 4 1.3874096064257777 1.1890236435568733 5 0.9838640703972137 1.0539764503668352 6 0.7342838276058548 0.943932665661027 7 0.6280148427219727 0.941876042103643 8 0.526683369541504 0.9027456291964951 9 0.45725522061467155 0.8817124721843452 >10 7.015531934114737 36.918770953715686 >50 1.8607296239919726 27.394242704904993 >100 0.28991910051529757 8.050338643096797 >500 0.0014130903782709643 0.19326057391538784 >1k 4.7103012609032145E-4 0.231761309658845 >5k 0.0 0.0 >10k+ 2.3551506304516072E-4 0.5447122442341024 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10795 0.5386291128162295 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3275 0.16340994390673008 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.989616607839087E-5 0.0 0.0 0.028341022332526014 0.0 2 4.989616607839087E-5 0.0 0.0 0.09475281938286426 0.0 3 4.989616607839087E-5 0.0 0.0 0.16051596627418344 0.0 4 4.989616607839087E-5 0.0 0.0 0.2752771482544824 0.0 5 4.989616607839087E-5 0.0 0.0 0.45585137329217895 0.0 6 4.989616607839087E-5 0.0 0.0 0.9242765804361125 0.0 7 4.989616607839087E-5 0.0 0.0 1.170214783036501 0.0 8 4.989616607839087E-5 0.0 0.0 1.8394720586459579 0.0 9 4.989616607839087E-5 0.0 0.0 2.1916391988272403 0.0 10 4.989616607839087E-5 0.0 0.0 2.688155947473308 0.0 11 4.989616607839087E-5 0.0 0.0 2.984040212318166 0.0 12 4.989616607839087E-5 0.0 0.0 3.2545772247952014 0.0 13 4.989616607839087E-5 0.0 0.0 3.4097044051329184 0.0 14 4.989616607839087E-5 0.0 0.0 3.4836505232610935 0.0 15 4.989616607839087E-5 0.0 0.0 3.5444739497106523 0.0 16 4.989616607839087E-5 0.0 0.0 3.645463789853315 0.0 17 4.989616607839087E-5 0.0 0.0 3.75787985202793 0.0 18 4.989616607839087E-5 0.0 0.0 3.93461207227759 0.0 19 4.989616607839087E-5 0.0 0.0 4.0134480146814475 0.0 20 4.989616607839087E-5 0.0 0.0 4.099019939505888 0.0 21 4.989616607839087E-5 0.0 0.0 4.199560714153846 0.0 22 4.989616607839087E-5 0.0 0.0 4.314521480798458 0.0 23 4.989616607839087E-5 0.0 0.0 4.444351304934432 0.0 24 4.989616607839087E-5 0.0 0.0 4.546887926225525 0.0 25 4.989616607839087E-5 0.0 0.0 4.645083581067798 0.0 26 4.989616607839087E-5 0.0 0.0 4.734896680008902 0.0 27 4.989616607839087E-5 0.0 0.0 4.829449914727452 0.0 28 4.989616607839087E-5 0.0 0.0 4.926298373085609 0.0 29 4.989616607839087E-5 0.0 0.0 5.032028349005719 0.0 30 9.979233215678174E-5 0.0 0.0 5.200178428689896 0.0 31 9.979233215678174E-5 0.0 0.0 5.315837741659607 0.0 32 9.979233215678174E-5 0.0 0.0 5.450058428410478 0.0 33 9.979233215678174E-5 0.0 0.0 5.567913172687637 0.0 34 9.979233215678174E-5 0.0 0.0 5.681027781187349 0.0018461581449004622 35 9.979233215678174E-5 0.0 0.0 5.811955320977047 0.0018461581449004622 36 9.979233215678174E-5 0.0 0.0 5.931157261738322 0.0018461581449004622 37 9.979233215678174E-5 0.0 0.0 6.059839474054493 0.0018461581449004622 38 9.979233215678174E-5 0.0 0.0 6.192413587324777 0.0018461581449004622 39 9.979233215678174E-5 0.0 0.0 6.332422229340742 0.0018461581449004622 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTAAG 20 7.034545E-4 45.0 1 CGTTTTT 7075 0.0 40.92933 1 GTTTACG 50 1.0822987E-9 40.5 1 TCGATAG 95 0.0 40.263157 1 CACGACC 765 0.0 39.11765 27 TGATTCG 365 0.0 38.835617 15 CGGTCTA 140 0.0 38.571426 31 GACGGGT 450 0.0 38.5 4 TAGGGTC 875 0.0 38.314285 5 AACACGT 705 0.0 37.978725 41 GCGATCG 155 0.0 37.74194 9 TGACGGG 875 0.0 37.54286 3 ACGGGTA 240 0.0 37.500004 5 ATAGGGC 1005 0.0 37.388058 4 GACGGGA 910 0.0 37.335163 4 TAGGGCG 880 0.0 37.329544 5 CGACGGT 145 0.0 37.241383 28 ACGGTCT 145 0.0 37.241383 30 AGACACG 805 0.0 37.173916 24 GACACGA 815 0.0 36.993866 25 >>END_MODULE