FastQCFastQC Report
Thu 26 May 2016
SRR1546658_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546658_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1781474
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT101780.5713246446481958No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC28670.16093414778997617No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCGAC253.8916725E-545.09
CAATACG253.8916725E-545.01
CGTTACC302.1661763E-644.99999627
ATACGTC302.1661763E-644.99999615
GTATGCG1150.043.0434761
TCGTAAG1050.040.7142871
CGTTTTT67200.040.6808051
CGAGGGT1650.039.5454564
TGTCACG403.459645E-739.3750041
AGGGTAC8800.038.8636366
AGGGCGA20150.038.8585626
CTATCGA356.250226E-638.5714262
TTAATCG1000.038.2520
GGTACCT11750.038.1063848
ACGGGAT6300.037.8571435
TACGGGA3450.037.8260884
GTCGCAT301.140174E-437.4999969
TATGCGA301.140174E-437.49999637
ACTTACG301.140174E-437.4999961
TACGTAC301.140174E-437.49999611