SRR1546658_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546658_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1781474
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10178	0.5713246446481958	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2867	0.16093414778997617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCGAC	25	3.8916725E-5	45.0	9
CAATACG	25	3.8916725E-5	45.0	1
CGTTACC	30	2.1661763E-6	44.999996	27
ATACGTC	30	2.1661763E-6	44.999996	15
GTATGCG	115	0.0	43.043476	1
TCGTAAG	105	0.0	40.714287	1
CGTTTTT	6720	0.0	40.680805	1
CGAGGGT	165	0.0	39.545456	4
TGTCACG	40	3.459645E-7	39.375004	1
AGGGTAC	880	0.0	38.863636	6
AGGGCGA	2015	0.0	38.858562	6
CTATCGA	35	6.250226E-6	38.571426	2
TTAATCG	100	0.0	38.25	20
GGTACCT	1175	0.0	38.106384	8
ACGGGAT	630	0.0	37.857143	5
TACGGGA	345	0.0	37.826088	4
GTCGCAT	30	1.140174E-4	37.499996	9
TATGCGA	30	1.140174E-4	37.499996	37
ACTTACG	30	1.140174E-4	37.499996	1
TACGTAC	30	1.140174E-4	37.499996	11