##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546657_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2326131 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.400841999010375 31.0 31.0 33.0 30.0 34.0 2 31.81394384065214 31.0 31.0 34.0 30.0 34.0 3 31.886656426486727 31.0 31.0 34.0 30.0 34.0 4 35.69242574902273 37.0 35.0 37.0 33.0 37.0 5 35.633809531793354 37.0 35.0 37.0 33.0 37.0 6 35.69545008428158 37.0 35.0 37.0 33.0 37.0 7 35.98697364851765 37.0 35.0 37.0 35.0 37.0 8 35.95978085499054 37.0 35.0 37.0 35.0 37.0 9 37.721829939930295 39.0 37.0 39.0 35.0 39.0 10 37.19332703102276 39.0 37.0 39.0 33.0 39.0 11 36.98398585462298 39.0 37.0 39.0 33.0 39.0 12 36.48597864866596 39.0 35.0 39.0 32.0 39.0 13 36.33258316062165 39.0 35.0 39.0 32.0 39.0 14 37.39337853285133 40.0 35.0 41.0 32.0 41.0 15 37.56401982519471 40.0 35.0 41.0 33.0 41.0 16 37.605906546105956 40.0 35.0 41.0 33.0 41.0 17 37.53526822006155 39.0 35.0 41.0 33.0 41.0 18 37.41427202509231 39.0 36.0 41.0 33.0 41.0 19 37.305734715714635 39.0 35.0 41.0 32.0 41.0 20 37.130868811773716 39.0 35.0 41.0 32.0 41.0 21 37.03168179264195 39.0 35.0 41.0 32.0 41.0 22 36.935468810655976 38.0 35.0 41.0 32.0 41.0 23 36.860936894783656 38.0 35.0 41.0 32.0 41.0 24 36.723971263871206 38.0 35.0 41.0 31.0 41.0 25 36.61329821923185 38.0 35.0 40.0 31.0 41.0 26 36.49575926721238 38.0 35.0 40.0 31.0 41.0 27 36.38880269425927 38.0 35.0 40.0 31.0 41.0 28 36.29977116508056 38.0 35.0 40.0 31.0 41.0 29 36.28350123015428 38.0 35.0 40.0 31.0 41.0 30 36.24426569268885 38.0 35.0 40.0 31.0 41.0 31 36.146410498806816 38.0 35.0 40.0 30.0 41.0 32 35.96827607731465 38.0 35.0 40.0 30.0 41.0 33 35.7507324394026 38.0 35.0 40.0 29.0 41.0 34 35.528980955930685 38.0 35.0 40.0 27.0 41.0 35 35.35212419248959 38.0 35.0 40.0 27.0 41.0 36 35.19004862580826 38.0 34.0 40.0 26.0 41.0 37 35.11523469658415 38.0 34.0 40.0 25.0 41.0 38 35.024361482650804 38.0 34.0 40.0 25.0 41.0 39 34.91771830563283 37.0 34.0 40.0 25.0 41.0 40 34.76015753197047 37.0 34.0 40.0 24.0 41.0 41 34.69961837918844 37.0 34.0 40.0 23.0 41.0 42 34.620707948090626 37.0 34.0 40.0 23.0 41.0 43 34.495773883758055 37.0 34.0 40.0 23.0 41.0 44 34.328515032042475 37.0 34.0 40.0 23.0 41.0 45 34.22450240334702 36.0 34.0 40.0 23.0 41.0 46 34.21132257813511 36.0 34.0 40.0 23.0 41.0 47 34.17473521482668 36.0 33.0 40.0 23.0 41.0 48 34.06844971327926 36.0 33.0 40.0 23.0 41.0 49 33.99164406475818 36.0 33.0 40.0 23.0 41.0 50 33.87436305177997 35.0 33.0 40.0 23.0 41.0 51 33.51363530256894 35.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 9.0 13 16.0 14 23.0 15 59.0 16 204.0 17 463.0 18 1014.0 19 1990.0 20 3469.0 21 5776.0 22 8942.0 23 13533.0 24 20434.0 25 30480.0 26 40940.0 27 45937.0 28 47003.0 29 49837.0 30 56300.0 31 66853.0 32 82126.0 33 106618.0 34 179059.0 35 280766.0 36 177658.0 37 222761.0 38 320622.0 39 562860.0 40 375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.98662027203111 23.401261579850836 27.402111059093404 16.21000708902465 2 33.43233893533941 24.784201749600516 28.134228037887805 13.649231277172266 3 28.846010822262375 24.696416495889526 32.79037165146761 13.667201030380491 4 24.83149057383269 28.002421187800685 32.25458927291713 14.911498965449496 5 22.57362117610745 31.5709218440406 31.315304254145616 14.540152725706335 6 20.529325304550774 39.81645917620289 29.129872737176022 10.524342782070313 7 84.69080202275796 4.357063295231438 9.180566356752909 1.7715683252576917 8 85.33573560560433 3.4909469844991534 8.900229608736568 2.273087801159952 9 80.05125248749962 5.260838705988614 11.414232474439316 3.2736763320724416 10 42.7472915325921 23.372630346270267 19.249947659869544 14.630130461268088 11 35.856922933403155 24.83149057383269 24.079684248221618 15.231902244542548 12 31.864714412043 22.695497373105812 27.6045502166473 17.835237998203883 13 22.61557926015345 30.98011247001996 29.17724754108861 17.227060728737978 14 19.16770809554578 33.079263377685955 30.83936373316894 16.913664793599327 15 19.292722550879553 23.558088516940792 40.25383781051024 16.895351121669417 16 20.80050521660216 21.65015641853361 38.92037894684349 18.628959418020738 17 20.900499584933094 21.748689132297365 30.73571522842007 26.615096054349475 18 23.411106253259167 23.25402137712794 33.418324247430604 19.916548122182284 19 27.201477474828373 25.03547736563418 28.019359184843847 19.7436859746936 20 28.501318283450072 24.18363368185197 27.557777270497663 19.757270764200296 21 24.248677310091306 26.723860350083466 29.86908303960525 19.15837930021998 22 23.78619260910069 24.06278924101867 28.663905859128313 23.487112290752325 23 21.463365562816538 27.81756487489312 27.783860840167645 22.935208722122702 24 21.50988056992491 24.922371096038873 34.68721237110034 18.88053596293588 25 20.787049396616098 25.301111588298337 32.601388313899776 21.310450701185786 26 19.133574162418196 30.154879497328395 29.472587743338618 21.23895859691479 27 20.149123157724137 28.881477440436505 30.58245644806763 20.386942953771737 28 19.394135583937448 27.41406223467208 34.151472982390075 19.0403291990004 29 20.021443332297277 25.240109005038843 33.799644130102735 20.938803532561153 30 20.839282052472537 27.712497705417277 31.95452018824391 19.49370005386627 31 25.74532560719925 26.266835358799657 28.49104371163963 19.496795322361464 32 26.524903369586667 26.705030800071018 28.268485308866953 18.50158052147536 33 25.184867060367623 27.337411349575753 27.45099050741338 20.02673108264324 34 21.25314524418444 28.230138371398688 29.33596603114786 21.180750353269012 35 20.872685158316536 28.192479271373795 30.382209772364497 20.552625797945172 36 26.080345431964062 27.32838348313143 27.14546171303336 19.445809371871146 37 22.103011395316948 30.031455666082437 28.08225332107263 19.78327961752799 38 22.163885009055807 30.182607944264532 26.34069190428226 21.312815142397397 39 22.468296067590344 29.186533346574205 26.74797765044187 21.59719293539358 40 24.323823550780244 26.394515184226513 27.31140249624806 21.970258768745182 41 20.280027221166822 25.731697827852347 28.331078516214266 25.657196434766572 42 23.326158329002105 26.316918522645544 26.325645460208392 24.031277688143962 43 22.52474172778747 26.154760845369413 28.020090012127437 23.30040741471568 44 21.54298274688743 28.385460664081258 28.458156483878167 21.61340010515315 45 20.365963911748736 31.259331482190817 26.389012484679498 21.985692121380954 46 22.358972903933612 29.26722527665037 26.931716227503955 21.442085591912065 47 21.814764516701768 28.18766440927016 27.950747399866987 22.046823674161086 48 22.783712525218917 26.223630569387534 29.56213558049826 21.430521324895288 49 22.331201467157268 25.647652690239713 29.497091952258923 22.524053890344096 50 20.857681704082875 29.57537645128327 28.427203798926197 21.139738045707656 51 20.601720195466207 30.26983433005278 26.423834255250455 22.704611219230557 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2610.0 1 3208.0 2 3806.0 3 18800.5 4 33795.0 5 23838.0 6 13881.0 7 14586.5 8 15292.0 9 16107.0 10 16922.0 11 17474.0 12 18026.0 13 17789.5 14 17553.0 15 17109.0 16 16665.0 17 16400.0 18 16135.0 19 15350.5 20 14566.0 21 13617.0 22 12668.0 23 13644.0 24 14620.0 25 16136.0 26 19372.5 27 21093.0 28 22634.5 29 24176.0 30 28318.5 31 32461.0 32 37401.0 33 42341.0 34 47288.0 35 52235.0 36 60319.0 37 68403.0 38 77992.5 39 87582.0 40 109863.0 41 132144.0 42 152292.0 43 172440.0 44 184372.5 45 196305.0 46 194902.0 47 193499.0 48 186541.0 49 179583.0 50 168879.5 51 158176.0 52 146288.0 53 134400.0 54 127503.0 55 120606.0 56 109307.0 57 98008.0 58 92453.0 59 86898.0 60 81584.5 61 76271.0 62 68250.0 63 60229.0 64 56686.0 65 53143.0 66 44680.0 67 36217.0 68 32044.0 69 27871.0 70 23633.0 71 19395.0 72 17203.5 73 15012.0 74 12573.0 75 8361.0 76 6588.0 77 5024.5 78 3461.0 79 2626.5 80 1792.0 81 1303.5 82 815.0 83 557.0 84 299.0 85 260.5 86 222.0 87 158.0 88 94.0 89 62.5 90 31.0 91 18.0 92 5.0 93 4.0 94 3.0 95 3.0 96 3.0 97 3.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2326131.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.063760139602383 #Duplication Level Percentage of deduplicated Percentage of total 1 79.23327072376071 18.274171510489968 2 6.6274315603967295 3.0570698370124183 3 2.429631028527999 1.6810928180911562 4 1.408050145738318 1.2989972330336301 5 0.9580309284037043 1.1047897769511812 6 0.7509540064580444 1.0391893848493055 7 0.5652929543885528 0.9126446776037342 8 0.47019370808571687 0.8675547921951356 9 0.3908658045838654 0.8113351647325472 >10 5.079529275965965 27.81907105967384 >50 1.5331450632776042 24.75058303955507 >100 0.5509568869919993 16.882553946584505 >500 0.001702230056173085 0.26984586876837235 >1k 7.565466916324823E-4 0.3419530820037619 >5k 0.0 0.0 >10k+ 1.8913667290812057E-4 0.8891478084555019 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20383 0.8762619130220954 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3911 0.16813326506546708 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.597968042212584E-5 0.0 0.0 0.04273190116979654 0.0 2 8.597968042212584E-5 0.0 0.0 0.12118835955498637 0.0 3 8.597968042212584E-5 0.0 0.0 0.21314362776644996 0.0 4 8.597968042212584E-5 0.0 0.0 0.3403075751107741 0.0 5 8.597968042212584E-5 0.0 0.0 0.5325151506944363 0.0 6 8.597968042212584E-5 0.0 0.0 1.0541108819752627 0.0 7 8.597968042212584E-5 0.0 0.0 1.3198310843198426 0.0 8 8.597968042212584E-5 0.0 0.0 2.005905944248196 0.0 9 8.597968042212584E-5 0.0 0.0 2.384431487306605 0.0 10 8.597968042212584E-5 0.0 0.0 2.893603154766434 0.0 11 8.597968042212584E-5 0.0 0.0 3.2449161289712403 0.0 12 8.597968042212584E-5 0.0 0.0 3.5619662005278294 0.0 13 8.597968042212584E-5 0.0 0.0 3.7527121215443153 0.0 14 8.597968042212584E-5 0.0 0.0 3.843162745348392 0.0 15 8.597968042212584E-5 0.0 0.0 3.9152137175421333 0.0 16 8.597968042212584E-5 0.0 0.0 4.0384655894272505 0.0 17 8.597968042212584E-5 0.0 0.0 4.174915342257164 0.0 18 8.597968042212584E-5 0.0 0.0 4.375720885883039 0.0 19 8.597968042212584E-5 0.0 0.0 4.466902336970704 0.0 20 8.597968042212584E-5 0.0 0.0 4.5672406240233245 0.0 21 8.597968042212584E-5 0.0 0.0 4.6861935118873355 0.0 22 8.597968042212584E-5 0.0 0.0 4.810692089138574 0.0 23 8.597968042212584E-5 0.0 0.0 4.9551809420879565 0.0 24 8.597968042212584E-5 0.0 0.0 5.071769388740359 0.0 25 8.597968042212584E-5 0.0 0.0 5.178814090865906 0.0 26 8.597968042212584E-5 0.0 0.0 5.2855578641099745 0.0 27 8.597968042212584E-5 0.0 0.0 5.403822914530609 0.0 28 8.597968042212584E-5 0.0 0.0 5.511641433779955 0.0 29 8.597968042212584E-5 0.0 0.0 5.636354960232248 0.0 30 8.597968042212584E-5 0.0 0.0 5.810248863885998 0.0 31 8.597968042212584E-5 0.0 0.0 5.939003435318131 0.0 32 8.597968042212584E-5 0.0 0.0 6.077000822395643 0.0 33 8.597968042212584E-5 0.0 0.0 6.209151591204451 0.0 34 8.597968042212584E-5 0.0 0.0 6.3437957707454995 0.0 35 8.597968042212584E-5 0.0 0.0 6.494647120046119 0.0 36 8.597968042212584E-5 0.0 0.0 6.633547293768064 0.0 37 8.597968042212584E-5 0.0 0.0 6.779755740325888 0.0 38 8.597968042212584E-5 0.0 0.0 6.9475020968294565 0.0 39 8.597968042212584E-5 0.0 0.0 7.157808395141976 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13980 0.0 41.99034 1 CATACGA 220 0.0 40.909092 18 AGGGCGA 2560 0.0 39.19922 6 CGTTAGG 335 0.0 38.283585 2 TTACGGG 635 0.0 38.267715 3 GCGTAAG 165 0.0 38.18182 1 CGTAAGG 385 0.0 37.987015 2 CCTCGAA 30 1.1402811E-4 37.500004 40 TACGCTA 30 1.1402811E-4 37.500004 1 CGGTCTA 90 0.0 37.5 31 GGGCGAT 4955 0.0 37.41675 7 CATATGC 1345 0.0 37.304832 33 ACGGGTA 260 0.0 37.211536 5 TAGGGTA 1210 0.0 37.004135 5 TCGTAAG 110 0.0 36.81818 1 TATGGGC 1070 0.0 36.799065 4 ACACGAC 810 0.0 36.666668 26 GGCGATT 1290 0.0 36.45349 8 TACGGGA 545 0.0 36.330276 4 TAGGGCG 1080 0.0 36.25 5 >>END_MODULE