##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546656_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1647585 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.892515408916687 31.0 31.0 33.0 28.0 34.0 2 31.262799187902292 31.0 31.0 34.0 30.0 34.0 3 31.419589277639698 31.0 31.0 34.0 30.0 34.0 4 35.20110525405366 37.0 35.0 37.0 33.0 37.0 5 34.974962748507664 35.0 35.0 37.0 32.0 37.0 6 35.04733473538543 37.0 35.0 37.0 32.0 37.0 7 35.58042953777802 36.0 35.0 37.0 35.0 37.0 8 35.60675473496056 37.0 35.0 37.0 35.0 37.0 9 37.36634468024411 39.0 37.0 39.0 35.0 39.0 10 36.6108589238188 39.0 35.0 39.0 32.0 39.0 11 36.21105678917932 38.0 35.0 39.0 31.0 39.0 12 35.43423616990929 37.0 35.0 39.0 30.0 39.0 13 35.131037245422846 37.0 34.0 39.0 30.0 39.0 14 35.98494705887708 38.0 34.0 40.0 29.0 41.0 15 36.278610208274536 38.0 35.0 40.0 30.0 41.0 16 36.39966010858317 38.0 35.0 40.0 31.0 41.0 17 36.312174485686626 38.0 35.0 40.0 31.0 41.0 18 36.24977345630119 38.0 35.0 40.0 30.0 41.0 19 36.18877994155081 37.0 35.0 40.0 30.0 41.0 20 36.012492830415425 37.0 34.0 40.0 30.0 41.0 21 35.85511157239232 37.0 34.0 40.0 30.0 41.0 22 35.80602761010813 37.0 34.0 40.0 30.0 41.0 23 35.616034984537976 37.0 34.0 40.0 29.0 41.0 24 35.579818340176686 37.0 34.0 40.0 29.0 41.0 25 35.41200545040165 36.0 34.0 40.0 29.0 41.0 26 35.28234294437009 36.0 34.0 40.0 29.0 41.0 27 35.09010946324469 36.0 34.0 40.0 27.0 41.0 28 35.05630968963665 36.0 34.0 40.0 27.0 41.0 29 34.95653881286853 36.0 34.0 40.0 27.0 41.0 30 34.90856556717863 36.0 33.0 40.0 27.0 41.0 31 34.801843303987354 36.0 33.0 40.0 26.0 41.0 32 34.57876346288659 36.0 33.0 40.0 25.0 41.0 33 34.35417353277676 36.0 33.0 40.0 24.0 41.0 34 34.247083458516556 36.0 33.0 40.0 24.0 41.0 35 34.03110127853798 36.0 33.0 40.0 23.0 41.0 36 33.76921130017571 35.0 33.0 40.0 23.0 41.0 37 33.804522376690734 35.0 33.0 40.0 23.0 41.0 38 33.73704725401117 35.0 33.0 40.0 23.0 41.0 39 33.64862632276939 35.0 32.0 40.0 22.0 41.0 40 33.548893076836706 35.0 32.0 40.0 22.0 41.0 41 33.568797360985926 35.0 32.0 40.0 22.0 41.0 42 33.29249052400938 35.0 32.0 40.0 21.0 41.0 43 33.3489385980086 35.0 32.0 40.0 21.0 41.0 44 33.13846205203373 35.0 32.0 40.0 20.0 41.0 45 32.95056582816668 35.0 31.0 39.0 20.0 41.0 46 33.02864799084721 35.0 32.0 39.0 20.0 41.0 47 32.874709347317435 35.0 31.0 39.0 20.0 41.0 48 32.940832794666136 35.0 32.0 39.0 20.0 41.0 49 32.86941735934717 35.0 31.0 39.0 20.0 41.0 50 32.330220899073495 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 28.0 15 92.0 16 244.0 17 712.0 18 1471.0 19 2754.0 20 4729.0 21 7393.0 22 10696.0 23 15105.0 24 20598.0 25 27141.0 26 33288.0 27 39333.0 28 44127.0 29 51042.0 30 59106.0 31 69512.0 32 82667.0 33 102997.0 34 155706.0 35 203931.0 36 126895.0 37 149891.0 38 193260.0 39 244860.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.65198153661268 25.524267336738315 28.42050637751618 12.403244749132822 2 31.457921746070767 26.576474051414646 28.260818106501333 13.704786096013255 3 28.919175641924394 26.632616830087674 30.629861281815508 13.818346246172428 4 25.142982000928633 29.880218623014898 30.205968129110182 14.770831246946289 5 23.191883878525235 32.847956251119065 29.164018851834655 14.796141018521048 6 21.396771638489064 42.91365847589047 25.91526385588604 9.77430602973443 7 87.2569852238276 4.840600029740498 6.479483607826 1.422931138605899 8 87.05135091664467 4.183031527963656 6.15628328735695 2.60933426803473 9 82.24674296015077 6.155069389439695 8.549604421016214 3.048583229393324 10 46.80838924850615 26.612223345077794 14.172865132906647 12.406522273509408 11 39.206414236594775 24.520859318335624 22.39319974386754 13.879526701202064 12 35.5733998549392 22.974838930920104 25.72644203485708 15.725319179283618 13 22.012339272328894 36.25045141828798 26.563728123283468 15.173481186099655 14 17.442256393448595 37.72964672535863 28.55421723310178 16.273879648090993 15 16.210817651289613 25.19900338980993 42.4766552256788 16.113523733221655 16 18.489668211351766 21.35076490742511 41.497039606454294 18.662527274768827 17 18.868829225806255 22.25038465390253 28.351071416649216 30.529714703641996 18 21.342024842420876 24.473274519979242 34.11981779392262 20.06488284367726 19 27.94708618978687 25.24980501764704 26.74198903243232 20.06111976013377 20 29.47234892281734 24.944448996561633 26.31682128691388 19.266380793707153 21 22.72265163861045 30.30144120030226 28.67269366982584 18.303213491261452 22 23.859709817702882 25.649966466070033 25.313898827678088 25.176424888548997 23 20.37114928820061 31.07997462953353 25.260548014214745 23.28832806805112 24 19.928562107569565 25.588482536561084 36.717923506222746 17.765031849646604 25 18.859482211843396 25.25229350837741 34.75250138839574 21.13572289138345 26 17.76466768027143 32.75849197461739 27.835346886503583 21.6414934586076 27 18.608144648075818 34.067559488584806 27.423228543595624 19.901067319743746 28 17.374156720290607 30.1867278471217 33.93955395321031 18.49956147937739 29 18.22054704309641 25.763162446854032 33.49714885726685 22.51914165278271 30 18.93000968083589 31.503685697551266 30.086581268948187 19.479723352664656 31 26.157800659753516 27.72476078624168 26.89239098438017 19.225047569624632 32 27.877833313607493 25.775240731130715 27.210614323388477 19.13631163187332 33 26.803897826212303 27.038544293617626 26.008673300618785 20.148884579551282 34 20.25789261252075 27.020699994233986 28.3369295059132 24.384477887332064 35 19.74253225175029 26.50970966596564 30.666703083604187 23.081054998679885 36 29.004573360403256 25.689782317755988 25.805648873957942 19.49999544788281 37 21.097849276365103 32.41684040580608 27.714867518216057 18.770442799612766 38 20.882382396052403 32.61470576631858 24.844181028596402 21.658730809032615 39 21.518768379173153 31.25586843774373 26.67346449500329 20.551898688079824 40 25.50672651183399 25.696822925676067 26.089640291699666 22.706810270790278 41 19.333266568947884 24.401654542861216 28.52611549631734 27.73896339187356 42 21.602345250776136 25.237241174203458 25.85772509460817 27.30268848041224 43 21.09305437959195 24.958044653234886 27.83200866723113 26.116892299942034 44 19.882798156089063 27.596087607012688 29.943584094295588 22.577530142602658 45 18.564626407742242 33.181717483468226 25.83290088220031 22.420755226589222 46 21.960566526157983 30.017267697872946 27.11168164313222 20.91048413283685 47 20.695381421899324 27.20132800432148 27.699268929979333 24.404021643799865 48 21.433006491319112 25.604627378860574 31.22370014293648 21.73866598688383 49 22.65151722065933 24.950457791252045 31.547871581739333 20.850153406349293 50 20.948114968271746 30.708157697478434 27.71432126415329 20.629406070096536 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2527.0 1 3025.5 2 3524.0 3 7443.0 4 11362.0 5 9009.5 6 6657.0 7 7456.5 8 8256.0 9 9020.0 10 9784.0 11 10165.0 12 10546.0 13 10961.5 14 11377.0 15 11107.0 16 10837.0 17 10763.5 18 10690.0 19 10389.5 20 10089.0 21 10332.5 22 10576.0 23 11268.0 24 11960.0 25 12570.5 26 13181.0 27 16003.0 28 18825.0 29 21093.5 30 23362.0 31 27775.5 32 32189.0 33 36364.5 34 40540.0 35 44119.5 36 47699.0 37 53249.0 38 58799.0 39 70181.5 40 81564.0 41 100586.5 42 119609.0 43 135360.0 44 151111.0 45 148698.5 46 146286.0 47 142712.5 48 139139.0 49 132152.5 50 125166.0 51 108859.0 52 92552.0 53 84410.5 54 76269.0 55 72139.0 56 68009.0 57 64288.5 58 60568.0 59 59302.5 60 58037.0 61 54175.5 62 50314.0 63 44613.0 64 38912.0 65 33377.5 66 27843.0 67 24175.5 68 20508.0 69 17797.5 70 15087.0 71 12271.0 72 9455.0 73 7816.5 74 6178.0 75 5103.0 76 4028.0 77 3005.5 78 1983.0 79 1535.5 80 1088.0 81 831.0 82 574.0 83 460.5 84 347.0 85 220.0 86 93.0 87 66.0 88 39.0 89 35.0 90 31.0 91 21.5 92 12.0 93 7.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1647585.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.209250430010833 #Duplication Level Percentage of deduplicated Percentage of total 1 81.81592644095396 19.807022523723994 2 5.832361854081336 2.823942174477947 3 2.127937229762718 1.5454729588400744 4 1.1610569919303142 1.1243327792462419 5 0.7970834229078084 0.9648396099392685 6 0.6156120629203543 0.8942103959384669 7 0.4888326187511704 0.8283989899993566 8 0.41567486554182564 0.805054153389051 9 0.3419601040566627 0.745073801656228 >10 4.527779395072679 26.055304172728672 >50 1.3024018743292762 21.831421084151977 >100 0.569063969325511 21.358167153566196 >500 0.0030417673174721843 0.5005604685549971 >1k 0.001013922439157395 0.36463531986683745 >5k 2.5348060978934873E-4 0.35156441392075255 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5729 0.34772105839759404 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2269 0.13771671871253985 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08521563379127632 0.0 2 0.0 0.0 0.0 0.27015298148502204 0.0 3 0.0 0.0 0.0 0.37703669309929383 0.0 4 0.0 0.0 0.0 0.6331084587441619 0.0 5 0.0 0.0 0.0 0.9819220252672851 0.0 6 0.0 0.0 0.0 1.5589484002342824 0.0 7 0.0 0.0 0.0 1.8229711972371683 0.0 8 0.0 0.0 0.0 2.5167745518440627 0.0 9 0.0 0.0 0.0 2.8178212353232155 0.0 10 0.0 0.0 0.0 3.30860016326927 0.0 11 0.0 0.0 0.0 3.7369847382684354 0.0 12 0.0 0.0 0.0 4.076390595932835 0.0 13 0.0 0.0 0.0 4.239235001532546 0.0 14 0.0 0.0 0.0 4.311886791880237 0.0 15 0.0 0.0 0.0 4.387451937229339 0.0 16 0.0 0.0 0.0 4.528446180318466 0.0 17 0.0 0.0 0.0 4.677209370078024 0.0 18 0.0 0.0 0.0 4.908214143731583 0.0 19 0.0 0.0 0.0 5.0059329260705825 0.0 20 0.0 0.0 0.0 5.115972772269716 0.0 21 0.0 0.0 0.0 5.2467095779580415 0.0 22 0.0 0.0 0.0 5.386247143546464 0.0 23 0.0 0.0 0.0 5.539501755599863 0.0 24 0.0 0.0 0.0 5.657189158677701 0.0 25 0.0 0.0 0.0 5.758974499039503 0.0 26 0.0 0.0 0.0 5.861184703672345 0.0 27 0.0 0.0 0.0 5.965215755181068 0.0 28 0.0 0.0 0.0 6.067972213876674 0.0 29 0.0 0.0 0.0 6.181775143619297 0.0 30 0.0 0.0 0.0 6.349596530679753 0.0 31 0.0 0.0 0.0 6.487191859600567 0.0 32 0.0 0.0 0.0 6.618110749976481 0.0 33 0.0 0.0 0.0 6.744234743579239 0.0 34 0.0 0.0 0.0 6.8710870759323495 0.0 35 0.0 0.0 0.0 7.036662751845883 0.0 36 0.0 0.0 0.0 7.17031291253562 0.0 37 0.0 0.0 0.0 7.308636580206787 0.0 38 0.0 0.0 0.0 7.456671431215992 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGC 25 4.4436827E-5 44.0 23 CCGTATC 25 4.4436827E-5 44.0 23 TACGATA 20 7.857478E-4 44.0 18 TATTCGA 25 4.4436827E-5 44.0 10 AATGTCG 25 4.4436827E-5 44.0 19 GTTGCGT 25 4.4436827E-5 44.0 11 TATCGCG 35 1.4465877E-7 43.999996 1 CGTAAGG 330 0.0 41.333332 2 ACGCTAG 55 7.8216544E-11 40.0 1 CGTTTTT 4750 0.0 39.924213 1 ACTAACG 50 1.3478711E-9 39.600002 1 CGGTCTA 145 0.0 39.448277 31 ATGTACG 190 0.0 39.36842 1 CGGGTAT 180 0.0 39.11111 6 CCACGAA 45 2.3519533E-8 39.11111 14 GCGATCG 40 4.1259955E-7 38.5 9 ATGGGCG 690 0.0 38.26087 5 ACGTAGG 230 0.0 38.26087 2 AGGGCGA 1680 0.0 38.107143 6 AGGGATC 1340 0.0 38.08955 6 >>END_MODULE