##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546655_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1713719 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.953160348925348 31.0 31.0 33.0 30.0 34.0 2 31.327944079513617 31.0 31.0 34.0 30.0 34.0 3 31.486641625610734 31.0 31.0 34.0 30.0 34.0 4 35.250685789210486 37.0 35.0 37.0 33.0 37.0 5 35.03409193689281 37.0 35.0 37.0 32.0 37.0 6 35.10260900415996 37.0 35.0 37.0 32.0 37.0 7 35.676812242847284 37.0 35.0 37.0 35.0 37.0 8 35.72916796744391 37.0 35.0 37.0 35.0 37.0 9 37.497719287701194 39.0 37.0 39.0 35.0 39.0 10 36.705406195531474 39.0 37.0 39.0 32.0 39.0 11 36.27526158022406 38.0 35.0 39.0 31.0 39.0 12 35.73180375545816 37.0 35.0 39.0 30.0 39.0 13 35.52237560533553 37.0 35.0 39.0 30.0 39.0 14 36.43488168130248 38.0 35.0 40.0 30.0 41.0 15 36.67945094849272 38.0 35.0 40.0 31.0 41.0 16 36.77171811714756 38.0 35.0 40.0 31.0 41.0 17 36.690564205683664 38.0 35.0 40.0 31.0 41.0 18 36.618493463630855 38.0 35.0 40.0 31.0 41.0 19 36.59833438270802 38.0 35.0 40.0 31.0 41.0 20 36.465333581526494 38.0 35.0 40.0 31.0 41.0 21 36.34726463323334 38.0 34.0 40.0 30.0 41.0 22 36.25963182995579 38.0 34.0 40.0 30.0 41.0 23 36.076972945973054 38.0 34.0 40.0 30.0 41.0 24 36.05811396150711 38.0 34.0 40.0 30.0 41.0 25 35.93226135673351 38.0 34.0 40.0 30.0 41.0 26 35.81540205833045 38.0 34.0 40.0 30.0 41.0 27 35.62259973776331 37.0 34.0 40.0 29.0 41.0 28 35.617458288085736 37.0 34.0 40.0 29.0 41.0 29 35.542629217508825 37.0 34.0 40.0 29.0 41.0 30 35.52235576544346 37.0 34.0 40.0 29.0 41.0 31 35.4317335572518 37.0 34.0 40.0 29.0 41.0 32 35.24707026064367 37.0 34.0 40.0 27.0 41.0 33 35.057037355599135 37.0 34.0 40.0 26.0 41.0 34 34.99809070215129 37.0 34.0 40.0 26.0 41.0 35 34.780196169850484 37.0 33.0 40.0 25.0 41.0 36 34.56667633375133 37.0 33.0 40.0 24.0 41.0 37 34.63981201118737 37.0 33.0 40.0 24.0 41.0 38 34.634106875164484 37.0 33.0 40.0 24.0 41.0 39 34.53349353073637 37.0 33.0 40.0 24.0 41.0 40 34.524657776449935 37.0 33.0 40.0 24.0 41.0 41 34.56009882600356 37.0 33.0 40.0 24.0 41.0 42 34.31219237226173 37.0 33.0 40.0 23.0 41.0 43 34.3666061938976 37.0 33.0 40.0 23.0 41.0 44 34.18376408267633 37.0 33.0 40.0 23.0 41.0 45 34.012408685437926 36.0 33.0 40.0 23.0 41.0 46 34.09200224774307 37.0 33.0 40.0 23.0 41.0 47 33.93772257878917 36.0 33.0 40.0 23.0 41.0 48 34.00922788391796 36.0 33.0 40.0 23.0 41.0 49 33.92915758067688 36.0 33.0 40.0 23.0 41.0 50 33.41810121729409 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 2.0 14 17.0 15 53.0 16 139.0 17 437.0 18 917.0 19 1974.0 20 3267.0 21 5276.0 22 8036.0 23 11678.0 24 16587.0 25 22394.0 26 28795.0 27 34502.0 28 39732.0 29 46523.0 30 55546.0 31 66094.0 32 81244.0 33 100336.0 34 146722.0 35 191414.0 36 135978.0 37 164326.0 38 228004.0 39 323722.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.399207804780133 25.917259480696657 30.120515673806498 13.56301704071671 2 28.186359607380208 28.34577897543296 30.139305218650197 13.328556198536635 3 27.33470306392121 27.011896349401503 31.670478065540497 13.982922521136778 4 23.497959700510997 30.578058596537705 31.528272721490513 14.395708981460789 5 22.228790134205198 33.6822431215386 30.096707803321316 13.99225894093489 6 20.59690065874277 43.18292555547321 26.259731029416137 9.960442756367877 7 90.17032547342943 3.3338604520344353 5.298184824933376 1.1976292496027645 8 90.70279316504048 2.6314699200977523 4.7053805203770285 1.9603563944847433 9 85.2903539028277 5.3747434672778915 6.903348798723711 2.4315538311706875 10 40.78842564037628 37.14517957728192 11.767273397797421 10.299121384544375 11 31.86794334427056 24.199825058834033 29.66139723023436 14.270834366661045 12 31.44021861226957 24.34745719689167 28.624762869525284 15.58756132131347 13 20.938788681224867 34.880455897378745 29.49083251104761 14.689922910348779 14 16.970985324898656 36.93166732702386 29.39315021890987 16.704197129167618 15 15.016931013777638 26.974725728080273 41.683496535896495 16.324846722245596 16 16.688383568134565 24.275566764446214 40.867026624551634 18.16902304286759 17 17.53134557065657 24.342964044863834 30.495197870829465 27.63049251365014 18 19.489251154944306 25.252214627952423 35.06584218299499 20.192692034108276 19 24.618621839403076 26.98966399975725 28.641918540904314 19.749795619935355 20 26.144134481790772 26.70618695363709 28.206491262569884 18.943187302002254 21 22.064410793134698 29.634088202324886 30.053701919626263 18.247799084914153 22 21.96270216995902 26.20791389953662 28.216061092862947 23.61332283764141 23 18.510560949607257 31.00642520739981 28.172588388177992 22.31042545481494 24 18.337078599233596 26.137248872189666 37.16431923786806 18.36135329070869 25 17.17183505580553 28.159634105708115 34.5637178557278 20.10481298275855 26 17.58888125766243 33.5623284797566 29.20478794948297 19.644002313098007 27 17.794515903715837 33.48244373785901 29.800509885226223 18.922530473198933 28 16.59344384931252 30.181552518236654 35.80406122590693 17.420942406543897 29 16.961882315595496 26.24275041590833 35.190600092547264 21.604767175948915 30 19.250413865983862 30.678250051496192 31.798737132517058 18.272598950002887 31 23.939805767456626 28.857006312003307 28.028340702297168 19.174847218242896 32 25.504356315125175 27.218406284810985 29.098352763784497 18.178884636279342 33 24.18237762433631 28.126489815424815 27.909884876108627 19.781247684130246 34 19.315768804570645 27.95685873821788 29.789481239339704 22.937891217871776 35 19.43825096179712 26.94409060061772 31.967784683486617 21.649873754098543 36 25.242236329293195 26.03612377525137 29.325577880621033 19.396062014834403 37 19.86883497236128 31.315168939598614 30.68869517114533 18.127300916894775 38 19.610741317567232 31.32316324905075 28.012001967650473 21.054093465731547 39 20.049319637583523 31.230149166812062 29.206071707205204 19.514459488399208 40 23.12578666630877 26.85597813877304 28.42805617490382 21.590179020014368 41 18.00032560764046 26.190057996672735 30.084220341841338 25.72539605384547 42 20.48585561576898 26.643866351484697 28.723845624632744 24.146432408113583 43 20.247485147798443 26.349419012101748 29.673359518100696 23.729736321999116 44 18.593304970068022 29.3291957432928 31.122196812896398 20.95530247374278 45 17.919098755396888 32.93626317966948 27.79959841724343 21.345039647690196 46 20.669432970049346 31.376497547147466 28.45238921900265 19.50168026380054 47 19.955371913365028 28.15753341125354 29.796658612059503 22.090436063321935 48 20.52436834743619 26.321409752707414 32.272210321528796 20.882011578327603 49 20.645041573326782 25.885982474372987 32.877385382317634 20.591590569982593 50 19.30748273199982 30.753875051860895 29.693374468042894 20.245267748096392 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1467.0 1 1862.5 2 2258.0 3 5764.5 4 9271.0 5 7613.0 6 5955.0 7 6497.0 8 7039.0 9 7648.0 10 8257.0 11 8683.0 12 9109.0 13 9222.0 14 9335.0 15 9103.5 16 8872.0 17 9157.0 18 9442.0 19 9088.5 20 8735.0 21 9744.0 22 10753.0 23 12098.0 24 13443.0 25 16228.5 26 19014.0 27 22831.5 28 26649.0 29 30361.5 30 34074.0 31 41073.0 32 48072.0 33 54756.5 34 61441.0 35 68384.0 36 75327.0 37 81325.0 38 87323.0 39 97392.5 40 107462.0 41 126963.5 42 146465.0 43 157905.0 44 169345.0 45 169327.5 46 169310.0 47 163082.0 48 156854.0 49 143366.0 50 129878.0 51 114827.0 52 99776.0 53 87267.0 54 74758.0 55 64309.5 56 53861.0 57 48560.0 58 43259.0 59 38677.5 60 34096.0 61 30103.5 62 26111.0 63 21597.0 64 17083.0 65 13918.5 66 10754.0 67 8746.0 68 6738.0 69 5775.5 70 4813.0 71 3999.0 72 3185.0 73 2447.5 74 1710.0 75 1397.0 76 1084.0 77 962.5 78 841.0 79 557.0 80 273.0 81 172.0 82 71.0 83 60.0 84 49.0 85 56.5 86 64.0 87 52.0 88 40.0 89 21.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1713719.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.797144134008864 #Duplication Level Percentage of deduplicated Percentage of total 1 80.91041693782984 18.445264368744592 2 6.3853492788295 2.911354557109313 3 2.196799779238862 1.5024228360260157 4 1.1752594112846055 1.0717023277562223 5 0.840476176319989 0.9580228266383719 6 0.6195503821168428 0.847438761563876 7 0.4913610337689594 0.7841139816066593 8 0.41369644240754855 0.7544877940233266 9 0.3511610164242979 0.7204921475102797 >10 4.4927527839787995 24.297503790790813 >50 1.417264814179112 22.723647154683597 >100 0.7012626882325625 23.969168708570546 >500 0.0036160875249211535 0.5161700592362676 >1k 0.0010331678642631866 0.4982106857401391 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4250 0.2479986508873392 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2042 0.1191560576733992 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04393952567486268 0.0 2 0.0 0.0 0.0 0.23113474262700012 0.0 3 0.0 0.0 0.0 0.3427049592144336 0.0 4 0.0 0.0 0.0 0.5821257744122578 0.0 5 0.0 0.0 0.0 0.94688802539973 0.0 6 0.0 0.0 0.0 1.5291888576832025 0.0 7 0.0 0.0 0.0 1.7998283265809623 0.0 8 0.0 0.0 0.0 2.489031165552812 0.0 9 0.0 0.0 0.0 2.822049589226705 0.0 10 0.0 0.0 0.0 3.347806729107864 0.0 11 0.0 0.0 0.0 3.8026654311471133 0.0 12 0.0 0.0 0.0 4.177872801783723 0.0 13 0.0 0.0 0.0 4.358999345867088 0.0 14 0.0 0.0 0.0 4.436725040686367 0.0 15 0.0 0.0 0.0 4.524370681541139 0.0 16 0.0 0.0 0.0 4.695460574341534 0.0 17 0.0 0.0 0.0 4.882947554412363 0.0 18 0.0 0.0 0.0 5.153178554943955 0.0 19 0.0 0.0 0.0 5.268191576331942 0.0 20 0.0 0.0 0.0 5.396625701179715 0.0 21 0.0 0.0 0.0 5.5556949534900415 0.0 22 0.0 0.0 0.0 5.725792851686887 0.0 23 0.0 0.0 0.0 5.918239804775462 0.0 24 0.0 0.0 0.0 6.067797579416462 0.0 25 0.0 0.0 0.0 6.195298062284423 0.0 26 0.0 0.0 0.0 6.316613167036136 0.0 27 0.0 0.0 0.0 6.4417211923308315 0.0 28 0.0 0.0 0.0 6.570038611931127 0.0 29 0.0 0.0 0.0 6.708042567071964 0.0 30 0.0 0.0 0.0 6.885376190612346 0.0 31 0.0 0.0 0.0 7.041644516983239 0.0 32 0.0 0.0 0.0 7.184258329399394 0.0 33 0.0 0.0 0.0 7.325063210479664 0.0 34 0.0 0.0 0.0 7.473920753635806 0.0 35 0.0 0.0 0.0 7.65247978227469 0.0 36 0.0 0.0 0.0 7.807289293052128 0.0 37 0.0 0.0 0.0 7.977562249120188 0.0 38 0.0 0.0 0.0 8.141533121824523 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 75 0.0 44.0 28 TACGCGG 50 2.7284841E-11 44.0 2 GTGCGAT 25 4.4437584E-5 44.0 35 ACCGTAT 35 1.4466423E-7 43.999996 9 CGACTAA 35 1.4466423E-7 43.999996 13 TAATGCG 35 1.4466423E-7 43.999996 1 TACACCG 35 1.4466423E-7 43.999996 1 TAGTACG 85 0.0 41.411762 1 CGTTTTT 4870 0.0 41.289528 1 CGAACGG 70 0.0 40.85714 2 CATACGA 415 0.0 40.81928 18 ACATACG 425 0.0 39.85882 17 GCGATGT 370 0.0 39.837837 9 CCAACGG 95 0.0 39.36842 2 GCGTAAG 90 0.0 39.11111 1 TGCGGGC 325 0.0 38.584614 4 CCGTATC 40 4.1261228E-7 38.5 37 CGCTATC 40 4.1261228E-7 38.5 30 AGTAGCG 40 4.1261228E-7 38.5 1 ATCGCTA 40 4.1261228E-7 38.5 28 >>END_MODULE