##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546653_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1712007 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.978260018796654 31.0 31.0 33.0 30.0 34.0 2 31.34235841325415 31.0 31.0 34.0 30.0 34.0 3 31.51352418535672 31.0 31.0 34.0 30.0 34.0 4 35.29576456171032 37.0 35.0 37.0 33.0 37.0 5 35.08835828358178 37.0 35.0 37.0 32.0 37.0 6 35.16469967704571 37.0 35.0 37.0 32.0 37.0 7 35.64153943295793 37.0 35.0 37.0 35.0 37.0 8 35.66931677265338 37.0 35.0 37.0 35.0 37.0 9 37.446164647691276 39.0 37.0 39.0 35.0 39.0 10 36.69544341816359 39.0 37.0 39.0 32.0 39.0 11 36.30231476857279 38.0 35.0 39.0 32.0 39.0 12 35.581350426721386 37.0 35.0 39.0 30.0 39.0 13 35.29222485655725 37.0 35.0 39.0 30.0 39.0 14 36.17056355493874 38.0 35.0 40.0 30.0 41.0 15 36.44369561573054 38.0 35.0 40.0 30.0 41.0 16 36.57032827552691 38.0 35.0 40.0 31.0 41.0 17 36.476675621069305 38.0 35.0 40.0 31.0 41.0 18 36.42903212428454 38.0 35.0 40.0 31.0 41.0 19 36.370304560670604 38.0 35.0 40.0 31.0 41.0 20 36.22029115535158 38.0 34.0 40.0 30.0 41.0 21 36.09166960181822 38.0 34.0 40.0 30.0 41.0 22 36.01444036151722 38.0 34.0 40.0 30.0 41.0 23 35.836692256515306 37.0 34.0 40.0 30.0 41.0 24 35.7680213924359 37.0 34.0 40.0 30.0 41.0 25 35.60301388954601 37.0 34.0 40.0 29.0 41.0 26 35.47622059956531 37.0 34.0 40.0 29.0 41.0 27 35.287023359133464 36.0 34.0 40.0 29.0 41.0 28 35.26421095240849 36.0 34.0 40.0 28.0 41.0 29 35.132424692188756 36.0 34.0 40.0 27.0 41.0 30 35.09659715176398 36.0 34.0 40.0 27.0 41.0 31 34.99952161410555 36.0 34.0 40.0 27.0 41.0 32 34.811539906086836 36.0 33.0 40.0 26.0 41.0 33 34.594582265142606 36.0 33.0 40.0 25.0 41.0 34 34.47923460593327 36.0 33.0 40.0 25.0 41.0 35 34.26449775030125 36.0 33.0 40.0 24.0 41.0 36 34.013876695597624 36.0 33.0 40.0 23.0 41.0 37 34.06932097824367 36.0 33.0 40.0 23.0 41.0 38 34.03962659031184 36.0 33.0 40.0 23.0 41.0 39 33.96153345167397 36.0 33.0 40.0 23.0 41.0 40 33.869210815142694 35.0 33.0 40.0 23.0 41.0 41 33.87647538824316 35.0 33.0 40.0 23.0 41.0 42 33.650421990097 35.0 33.0 40.0 23.0 41.0 43 33.70458298359761 35.0 33.0 40.0 23.0 41.0 44 33.51167956673074 35.0 32.0 40.0 22.0 41.0 45 33.3245284627925 35.0 32.0 39.0 22.0 41.0 46 33.39012048432045 35.0 32.0 39.0 23.0 41.0 47 33.246270605201964 35.0 32.0 39.0 22.0 41.0 48 33.28038904046537 35.0 32.0 39.0 22.0 41.0 49 33.20559612197847 35.0 32.0 39.0 22.0 41.0 50 32.69638675542799 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 5.0 14 9.0 15 58.0 16 191.0 17 526.0 18 1173.0 19 2359.0 20 3980.0 21 6324.0 22 9496.0 23 13484.0 24 18648.0 25 24764.0 26 31532.0 27 37698.0 28 43478.0 29 50177.0 30 59314.0 31 70110.0 32 84876.0 33 106175.0 34 161500.0 35 210308.0 36 137939.0 37 163231.0 38 211012.0 39 263639.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.42883527929501 24.343533642093753 29.13253275249459 13.095098326116657 2 30.88603025571741 26.660580242954612 29.148946236785246 13.304443264542726 3 28.847720832917155 26.25585058939596 30.9340440780908 13.962384499596089 4 25.617652264272284 29.39859474873642 30.023008083494986 14.960744903496307 5 22.88325923901012 33.36586824703404 29.757997484823367 13.992875029132474 6 21.393195238103583 43.11512744982935 25.86151808958725 9.630159222479815 7 88.78725379043428 4.0520862356287095 5.938059832699282 1.2226001412377403 8 89.06622461239937 3.3611427990656577 5.691507102482642 1.881125486052335 9 84.03908395234365 5.560491283037979 7.774267278112765 2.6261574865056043 10 47.80541201058173 25.915723475429715 13.893868424603403 12.38499608938515 11 39.1447581697972 24.810996684008884 21.86790124105801 14.176343905135901 12 36.764802947651496 22.06013176347994 25.33733798985635 15.837727299012212 13 22.658318569959118 34.222698855787385 26.696094116437607 16.422888457815883 14 18.618615461268558 36.126370978623335 28.181602061206522 17.07341149890158 15 17.063072756127752 24.603053609009777 41.16793914978151 17.16593448508096 16 19.45657932473407 20.377778829175348 40.687275227262504 19.478366618828076 17 19.799393343601984 21.024914033645892 29.443512789375276 29.732179833376847 18 21.99079793482153 23.74855943930136 32.997820686480836 21.262821939396275 19 28.62061895774959 24.74610208953585 26.360523058608987 20.272755894105572 20 30.330366639856027 24.173791345479312 25.83371446495254 19.66212754971212 21 24.246980298561862 28.696377993781567 27.901755074599578 19.154886633056993 22 24.185765595584595 24.525659065646344 25.43996607490507 25.84860926386399 23 21.872982995980742 29.54672498418523 25.073495610707198 23.50679640912683 24 21.020065922627655 24.2615830425927 36.31252675952844 18.405824275251213 25 20.57351401016468 25.21233850095239 33.297761048874214 20.916386440008715 26 19.619020249333094 31.11284007600436 27.618520251377475 21.649619423285067 27 19.76376264816674 32.77813700528094 27.18119727314199 20.27690307341033 28 18.318616687899056 29.82335936710539 32.943089601853266 18.91493434314229 29 19.479476427374422 25.795864152424606 32.67574256413671 22.048916856064256 30 20.73367690669489 30.31681529339541 29.481129457998712 19.468378341910984 31 27.22611531378084 27.701054960639766 25.994461471243984 19.07836825433541 32 28.559404254772325 26.2004185730549 26.173783167942656 19.066394004230123 33 28.85852686349997 26.744808870524476 24.563392556222023 19.83327170975352 34 21.819420130875635 27.375238535823744 26.727110344759105 24.07823098854152 35 21.74704893145881 25.999251171286097 29.771548831283983 22.48215106597111 36 29.17850219070366 26.503805183039553 24.161583451469532 20.156109174787254 37 21.980809657904434 32.54963326668641 26.383361750273217 19.08619532513594 38 22.039279045003905 31.304486488665056 25.277817205186658 21.378417261144374 39 22.215621781920284 30.98842469686164 25.430678729701455 21.365274791516622 40 25.81402996599897 25.597442066533603 26.70281137869179 21.88571658877563 41 19.10564618018501 25.3462164582271 27.82640491540046 27.72173244618743 42 21.51299615013256 25.923725779158612 25.526122264687 27.037155806021822 43 21.8638708837055 25.315784339666834 26.987681709245347 25.832663067382317 44 20.006285021030873 27.789197123609892 29.19806986770498 23.006447987654255 45 19.50132213244455 32.69180558257063 25.451473037201367 22.35539924778345 46 21.32064880575839 31.30571311916365 26.52255510637515 20.851082968702812 47 21.937819179477653 27.268580093422518 26.941303394203413 23.85229733289642 48 22.27823834832451 25.958538720928125 30.290530354139904 21.472692576607454 49 21.94471167466021 25.594579928703563 30.944616464769126 21.516091931867102 50 21.288113892057684 30.673180658723943 27.37699086510744 20.66171458411093 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1930.0 1 2559.5 2 3189.0 3 8040.5 4 12892.0 5 9853.5 6 6815.0 7 7345.0 8 7875.0 9 8534.0 10 9193.0 11 9465.0 12 9737.0 13 9870.0 14 10003.0 15 9634.0 16 9265.0 17 9117.0 18 8969.0 19 8738.0 20 8507.0 21 8640.5 22 8774.0 23 8999.0 24 9224.0 25 11296.0 26 13368.0 27 16096.0 28 18824.0 29 22302.0 30 25780.0 31 28432.5 32 31085.0 33 36672.5 34 42260.0 35 46643.5 36 51027.0 37 54833.5 38 58640.0 39 70078.0 40 81516.0 41 101630.0 42 121744.0 43 136285.0 44 150826.0 45 148435.5 46 146045.0 47 137436.5 48 128828.0 49 124835.5 50 120843.0 51 109526.5 52 98210.0 53 89120.0 54 80030.0 55 75970.5 56 71911.0 57 72380.5 58 72850.0 59 71883.0 60 70916.0 61 67532.5 62 64149.0 63 56181.5 64 48214.0 65 41460.5 66 34707.0 67 29283.5 68 23860.0 69 20891.5 70 17923.0 71 15499.0 72 13075.0 73 10433.5 74 7792.0 75 6538.0 76 5284.0 77 4150.5 78 3017.0 79 2358.0 80 1699.0 81 1195.0 82 691.0 83 470.5 84 250.0 85 184.0 86 118.0 87 112.0 88 106.0 89 68.0 90 30.0 91 21.5 92 13.0 93 7.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1712007.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.690065274656938 #Duplication Level Percentage of deduplicated Percentage of total 1 80.58786816276813 17.47956120795888 2 5.96039902383246 2.5856288777985506 3 2.2245008457916304 1.4474870564625009 4 1.2638276203298309 1.096500143234735 5 0.837530261183554 0.908304301728588 6 0.6551916972844412 0.8526690408907677 7 0.5250870729550058 0.7972421021090836 8 0.43070527688672905 0.7473620455849874 9 0.4016112958026051 0.7839877698898254 >10 4.899046144331008 25.269556690468807 >50 1.52346052725683 23.104910354462504 >100 0.6875098658093777 24.023158731026452 >500 0.0024466543263083 0.32860941883432815 >1k 5.437009614018445E-4 0.17771914379448506 >5k 2.7185048070092223E-4 0.39730311575555416 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6738 0.39357315711910057 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.033294256390306816 0.0 2 0.0 0.0 0.0 0.12996442187444326 0.0 3 0.0 0.0 0.0 0.19328191999214955 0.0 4 0.0 0.0 0.0 0.32920426143117404 0.0 5 0.0 0.0 0.0 0.5240632777786539 0.0 6 5.841097612334529E-5 0.0 0.0 0.8515152099261276 0.0 7 5.841097612334529E-5 0.0 0.0 0.9908837989564295 0.0 8 5.841097612334529E-5 0.0 0.0 1.360099579032095 0.0 9 5.841097612334529E-5 0.0 0.0 1.5232414353445984 0.0 10 5.841097612334529E-5 0.0 0.0 1.7877847462072294 0.0 11 5.841097612334529E-5 0.0 0.0 2.032643558116293 0.0 12 5.841097612334529E-5 0.0 0.0 2.2272689305592794 0.0 13 5.841097612334529E-5 0.0 0.0 2.3222451777358386 0.0 14 5.841097612334529E-5 0.0 0.0 2.3686819037538984 0.0 15 5.841097612334529E-5 0.0 0.0 2.419265809076715 0.0 16 5.841097612334529E-5 0.0 0.0 2.526157895382437 0.0 17 5.841097612334529E-5 0.0 0.0 2.6425709707962644 0.0 18 5.841097612334529E-5 0.0 0.0 2.805420772228151 0.0 19 5.841097612334529E-5 0.0 0.0 2.8784344923823326 0.0 20 5.841097612334529E-5 0.0 0.0 2.950922513751404 0.0 21 5.841097612334529E-5 0.0 0.0 3.047651090211664 0.0 22 5.841097612334529E-5 0.0 0.0 3.148643667928928 0.0 23 5.841097612334529E-5 0.0 0.0 3.2693791555758827 0.0 24 5.841097612334529E-5 0.0 0.0 3.3610843880895347 0.0 25 5.841097612334529E-5 0.0 0.0 3.441866768068121 0.0 26 5.841097612334529E-5 0.0 0.0 3.523525312688558 0.0 27 5.841097612334529E-5 0.0 0.0 3.6092142146615056 0.0 28 5.841097612334529E-5 0.0 0.0 3.6936180751597396 0.0 29 5.841097612334529E-5 0.0 0.0 3.785732184506255 0.0 30 5.841097612334529E-5 0.0 0.0 3.9102059746251037 0.0 31 5.841097612334529E-5 0.0 0.0 4.027144748824041 0.0 32 5.841097612334529E-5 0.0 0.0 4.132109272917693 0.0 33 5.841097612334529E-5 0.0 0.0 4.238300427509934 0.0 34 5.841097612334529E-5 0.0 0.0 4.349748569953277 0.0 35 5.841097612334529E-5 0.0 0.0 4.484210636989218 0.0 36 5.841097612334529E-5 0.0 0.0 4.605471823421283 0.0 37 5.841097612334529E-5 0.0 0.0 4.727609174495198 0.0 38 5.841097612334529E-5 0.0 0.0 4.8565221987994205 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 80 0.0 44.000004 38 GTCGTTA 20 7.8575616E-4 44.000004 31 CCGCTAA 45 4.802132E-10 44.0 18 TCGCGAT 25 4.4437555E-5 44.0 39 ATTTACG 75 0.0 41.066666 1 CTAACGG 75 0.0 41.066666 2 CGGTCTA 130 0.0 40.615387 31 CGTTAGG 190 0.0 40.526318 2 AGGGCGA 2025 0.0 39.762966 6 CGTAAGG 415 0.0 39.759037 2 TTACGCG 50 1.3478711E-9 39.600002 1 CGTTTTT 5470 0.0 39.495426 1 TAACGGG 275 0.0 39.2 3 TAGCACG 45 2.3521352E-8 39.11111 1 CGAAAGG 255 0.0 38.823532 2 GCATATC 925 0.0 38.529728 28 TGTTACG 80 0.0 38.500004 1 TAGGGCG 820 0.0 38.365856 5 GCGATAA 155 0.0 38.322582 9 GTTACGG 115 0.0 38.26087 2 >>END_MODULE