##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546652_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2012282 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.940940683264074 31.0 31.0 33.0 30.0 34.0 2 31.309334874535477 31.0 31.0 34.0 30.0 34.0 3 31.470392320758222 31.0 31.0 34.0 30.0 34.0 4 35.25058863519129 37.0 35.0 37.0 33.0 37.0 5 35.04075373133587 37.0 35.0 37.0 32.0 37.0 6 35.11467030962857 37.0 35.0 37.0 32.0 37.0 7 35.60236835592626 36.0 35.0 37.0 35.0 37.0 8 35.62596147060899 37.0 35.0 37.0 35.0 37.0 9 37.3933882030451 39.0 37.0 39.0 35.0 39.0 10 36.67790846412183 39.0 35.0 39.0 32.0 39.0 11 36.271005753666735 38.0 35.0 39.0 32.0 39.0 12 35.452757615483314 37.0 35.0 39.0 30.0 39.0 13 35.11846947892989 37.0 34.0 39.0 30.0 39.0 14 35.99433578395076 38.0 34.0 40.0 29.0 41.0 15 36.31641589001939 38.0 35.0 40.0 30.0 41.0 16 36.466391887419356 38.0 35.0 40.0 31.0 41.0 17 36.385383857729686 38.0 35.0 40.0 31.0 41.0 18 36.35975077051825 38.0 35.0 40.0 31.0 41.0 19 36.28122748203284 37.0 35.0 40.0 31.0 41.0 20 36.11933267802425 37.0 34.0 40.0 30.0 41.0 21 35.96859485897106 37.0 34.0 40.0 30.0 41.0 22 35.90722373901868 37.0 34.0 40.0 30.0 41.0 23 35.737305208713295 37.0 34.0 40.0 30.0 41.0 24 35.6911854302727 37.0 34.0 40.0 30.0 41.0 25 35.50691503477147 36.0 34.0 40.0 29.0 41.0 26 35.3705971628231 36.0 34.0 40.0 29.0 41.0 27 35.15794108380436 36.0 34.0 40.0 28.0 41.0 28 35.13057513807707 36.0 34.0 40.0 28.0 41.0 29 35.046310606565086 36.0 34.0 40.0 27.0 41.0 30 35.01456406209468 36.0 34.0 40.0 27.0 41.0 31 34.894358246011244 36.0 34.0 40.0 27.0 41.0 32 34.64289249717485 36.0 33.0 40.0 25.0 41.0 33 34.434532038750035 36.0 33.0 40.0 25.0 41.0 34 34.324587706891975 36.0 33.0 40.0 24.0 41.0 35 34.12993357789813 35.0 33.0 40.0 24.0 41.0 36 33.84392744158125 35.0 33.0 40.0 23.0 41.0 37 33.90085634120864 35.0 33.0 40.0 23.0 41.0 38 33.88520098077705 35.0 33.0 40.0 23.0 41.0 39 33.81946814611471 35.0 33.0 40.0 23.0 41.0 40 33.7090999174072 35.0 33.0 40.0 23.0 41.0 41 33.7232008237414 35.0 33.0 40.0 23.0 41.0 42 33.46565789486762 35.0 32.0 40.0 22.0 41.0 43 33.50334048607501 35.0 32.0 40.0 22.0 41.0 44 33.32438743675091 35.0 32.0 40.0 21.0 41.0 45 33.15275244722161 35.0 32.0 39.0 20.0 41.0 46 33.21299549466725 35.0 32.0 39.0 22.0 41.0 47 33.06465048139376 35.0 32.0 39.0 20.0 41.0 48 33.12486520278967 35.0 32.0 39.0 21.0 41.0 49 33.04478398156918 35.0 32.0 39.0 20.0 41.0 50 32.52931398283143 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 19.0 15 69.0 16 228.0 17 633.0 18 1492.0 19 2879.0 20 4770.0 21 7712.0 22 11536.0 23 16412.0 24 23128.0 25 30875.0 26 38645.0 27 45675.0 28 52113.0 29 60187.0 30 70972.0 31 84936.0 32 101748.0 33 127844.0 34 197681.0 35 261836.0 36 155522.0 37 180758.0 38 231466.0 39 303139.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.89896744094516 24.658074762881146 29.45079268213898 12.992165114034712 2 29.564345355173877 27.916017735088822 28.983313471968643 13.536323437768663 3 28.496850838997716 26.716931324734805 31.41130318712785 13.374914649139633 4 25.2289192071489 29.89874182644381 30.068499345519168 14.803839620888127 5 22.810073339621383 33.25264550396018 30.043403459356092 13.89387769706234 6 20.838530583685586 42.963610468115306 25.513869328453964 10.683989619745144 7 87.47645707708959 4.675438134416548 6.322374299427218 1.5257304890666417 8 87.57554855631567 3.8979129167780657 5.750734737974101 2.7758037889321674 9 82.35714477394322 6.058296004237975 8.530712892129433 3.0538463296893776 10 48.19299680661061 26.284188796600077 13.631588415540168 11.891225981249148 11 40.95295788562438 23.543022300055362 21.967199428310742 13.536820386009515 12 38.87675783016496 21.241406522545052 24.009408224095825 15.872427423194166 13 22.0447233538838 37.25163769292773 25.25948152396135 15.444157429227115 14 16.14694163144132 39.54117762818532 27.04203486390079 17.26984587647258 15 14.623745578403028 24.884732855534164 43.79932832475767 16.692193241305144 16 16.028667950118322 19.955950507930797 44.41390421422047 19.601477327730407 17 16.165279021528793 21.755648562179655 29.678394976449624 32.40067743984193 18 19.711700447551586 24.09413789916125 34.10660136104185 22.08756029224532 19 27.360131432870745 25.6610653973946 25.994666751479166 20.984136418255492 20 31.130527431045945 23.626161740750053 25.355243449973713 19.888067378230286 21 22.323362232530034 30.9026269677908 27.01430515206119 19.759705647617977 22 22.58898106726592 26.576742225990195 23.0036346794336 27.830642027310287 23 19.79434294000543 32.11652243572223 23.12111324357123 24.968021380701114 24 19.507901973977802 24.0716758386747 37.766326985979106 18.6540952013684 25 18.63908736449464 25.476796989686335 34.16310437602682 21.721011269792207 26 17.47528427924118 34.51549037361563 27.108824707471417 20.900400639671776 27 18.675314891252818 35.79925676421098 25.862776688356803 19.662651656179403 28 17.026291543630563 30.74946751995993 34.298622161307414 17.925618775102098 29 17.244004567948227 25.359865068613647 33.91358666429456 23.48254369914356 30 19.510635189302494 31.969177282309335 28.515436703205616 20.004750825182555 31 26.684828468375706 28.898335322782792 24.43847333524824 19.978362873593262 32 29.29693750677092 26.650240870812343 25.738688712615826 18.31413290980091 33 28.610801070625293 27.197182104695067 23.560266404012957 20.631750420666688 34 20.029946100993797 27.004614661364563 27.082685230002557 25.882754007639086 35 20.361758441411293 26.060015445151326 29.559773431358032 24.01845268207935 36 29.28530891793496 25.63542286816659 24.780125250834626 20.299142963063822 37 20.667729473304437 32.74128576412252 27.481287413990685 19.109697348582355 38 19.60167610702675 31.986818944859618 25.440072514687305 22.97143243342633 39 20.651379876180375 31.56888547430231 26.226145242068455 21.553589407448857 40 25.91609923460032 25.012448553433366 26.44475277321966 22.626699438746655 41 17.6752562513604 24.140602559681 28.974318708809204 29.2098224801494 42 21.042378752083454 24.91454974998534 25.66429556096014 28.378775936971063 43 20.912029228507734 24.939297772379813 27.65730648090079 26.491366518211663 44 19.735156404519845 27.84366207122063 29.877919695152073 22.54326182910745 45 18.149543652430424 33.59270718517583 24.93850265519445 23.31924650719929 46 20.90035094484769 31.840567077576605 25.934188150567365 21.324893827008342 47 20.7969360159262 26.37537879879659 27.69497515755744 25.132710027719774 48 21.669875295808442 24.044244295779617 31.397289246735795 22.888591161676146 49 20.5928393734079 24.5541628857188 32.751721677180434 22.10127606369286 50 19.806716951202663 30.929660952093197 27.78889837507864 21.474723721625498 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2465.0 1 3325.5 2 4186.0 3 8688.0 4 13190.0 5 10646.0 6 8102.0 7 8817.0 8 9532.0 9 10403.0 10 11274.0 11 11829.0 12 12384.0 13 12482.5 14 12581.0 15 12255.5 16 11930.0 17 11857.5 18 11785.0 19 11762.0 20 11739.0 21 11655.0 22 11571.0 23 11940.0 24 12309.0 25 12663.5 26 13018.0 27 16397.5 28 19777.0 29 25394.0 30 31011.0 31 35153.0 32 39295.0 33 42374.0 34 45453.0 35 51669.5 36 57886.0 37 60957.0 38 64028.0 39 76166.0 40 88304.0 41 117623.5 42 146943.0 43 163378.0 44 179813.0 45 190602.5 46 201392.0 47 191668.0 48 181944.0 49 171642.5 50 161341.0 51 142159.5 52 122978.0 53 105866.5 54 88755.0 55 81743.0 56 74731.0 57 74260.0 58 73789.0 59 73993.5 60 74198.0 61 69414.0 62 64630.0 63 55930.0 64 47230.0 65 39458.5 66 31687.0 67 27257.5 68 22828.0 69 19647.0 70 16466.0 71 14350.0 72 12234.0 73 10434.0 74 8634.0 75 6841.0 76 5048.0 77 3871.0 78 2694.0 79 2156.5 80 1619.0 81 1297.0 82 975.0 83 664.0 84 353.0 85 232.0 86 111.0 87 76.5 88 42.0 89 31.5 90 21.0 91 12.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2012282.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.040331189648374 #Duplication Level Percentage of deduplicated Percentage of total 1 81.4765801306957 17.957708102804574 2 7.050424132480633 3.1078736581472493 3 2.343662607644125 1.5496530020781434 4 1.2582172082525824 1.1092609591360678 5 0.7826505408082252 0.8624938562585345 6 0.5542227590955119 0.7329151897983474 7 0.4489727227266749 0.6926855252809858 8 0.3459091158737761 0.6099161180301185 9 0.2990356756439008 0.5931760795840657 >10 3.3615614346443654 17.301595093290935 >50 1.1552937099831393 18.420055496527922 >100 0.9136409502251112 35.00992739344861 >500 0.007771776871988446 1.0397456946773962 >1k 0.0018286533816443404 0.6896539787982787 >5k 2.2858167270554256E-4 0.3233398521387503 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6418 0.31894138097940544 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3877 0.19266683297867793 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09610978978095515 0.0 2 0.0 0.0 0.0 0.3164566397751409 0.0 3 0.0 0.0 0.0 0.4548070300285944 0.0 4 0.0 0.0 0.0 0.7585417948379004 0.0 5 0.0 0.0 0.0 1.1609207854565116 0.0 6 0.0 0.0 0.0 1.9278610055648264 0.0 7 0.0 0.0 0.0 2.2775137878289424 0.0 8 0.0 0.0 0.0 3.2622664219030932 0.0 9 0.0 0.0 0.0 3.738044667695681 0.0 10 0.0 0.0 0.0 4.514426904380201 0.0 11 0.0 0.0 0.0 5.151713328449989 0.0 12 0.0 0.0 0.0 5.675894332901651 0.0 13 0.0 0.0 0.0 5.962732857521957 0.0 14 0.0 0.0 0.0 6.087715340096468 0.0 15 0.0 0.0 0.0 6.204746650817331 0.0 16 0.0 0.0 0.0 6.428969697090169 0.0 17 0.0 0.0 0.0 6.660597272151716 0.0 18 0.0 0.0 0.0 7.005827215072241 0.0 19 0.0 0.0 0.0 7.144426079446121 0.0 20 0.0 0.0 0.0 7.284963041959328 0.0 21 0.0 0.0 0.0 7.466249760222474 0.0 22 0.0 0.0 0.0 7.648778849087752 0.0 23 0.0 0.0 0.0 7.853273050198729 0.0 24 0.0 0.0 0.0 8.01920406781952 0.0 25 0.0 0.0 0.0 8.153280703201638 0.0 26 0.0 0.0 0.0 8.284971987027664 0.0 27 0.0 0.0 0.0 8.427049489087514 0.0 28 0.0 0.0 0.0 8.552528919902876 0.0 29 0.0 0.0 0.0 8.697289942463332 0.0 30 0.0 0.0 0.0 8.885533936098419 0.0 31 0.0 0.0 0.0 9.041525988902151 0.0 32 0.0 0.0 0.0 9.192946117890036 0.0 33 0.0 0.0 0.0 9.331495287439832 0.0 34 0.0 0.0 0.0 9.47814471331553 0.0 35 0.0 0.0 0.0 9.672898728905789 0.0 36 0.0 0.0 0.0 9.832270029747322 0.0 37 0.0 0.0 0.0 9.991889804709281 0.0 38 0.0 0.0 0.0 10.148428500577952 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCCG 20 7.857892E-4 44.000004 1 CCTCGCA 20 7.857892E-4 44.000004 14 TAGCCGT 20 7.857892E-4 44.000004 44 CGCACGA 20 7.857892E-4 44.000004 40 CATACGT 30 2.5286681E-6 44.0 37 CGTAAAT 45 4.802132E-10 44.0 16 TAATGCG 25 4.4440363E-5 44.0 1 GTTATCG 25 4.4440363E-5 44.0 1 TATTGCG 160 0.0 42.625004 1 TATAGCG 90 0.0 41.555557 1 CGTACAT 70 0.0 40.857143 35 CGGTCTA 140 0.0 40.857143 31 TATCACG 65 0.0 40.615387 1 CCCGTAA 65 0.0 40.615387 33 CGTTTTT 5595 0.0 40.2252 1 CGGTATG 55 7.8216544E-11 40.000004 6 CGGAATA 50 1.3496901E-9 39.6 29 CTAAACG 50 1.3496901E-9 39.6 1 TCGATTG 90 0.0 39.11111 1 TTACGTC 45 2.352499E-8 39.11111 32 >>END_MODULE