SRR1546651_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546651_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2336499
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10204	0.43672177903778264	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3693	0.15805699039460322	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2668	0.1141879367378287	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	7.858151E-4	44.000004	23
CTATTCG	20	7.858151E-4	44.000004	14
CGTCGTT	20	7.858151E-4	44.000004	22
GCGTACA	20	7.858151E-4	44.000004	37
TGCGTAC	20	7.858151E-4	44.000004	36
CGGTCTA	120	0.0	44.0	31
GTCGGAC	25	4.4442568E-5	44.0	9
CGTTTTT	10610	0.0	41.532516	1
TAGTGCG	75	0.0	41.066666	1
CGACGGT	130	0.0	40.615387	28
CTATGCG	225	0.0	40.08889	1
ATCGACG	55	7.8216544E-11	40.000004	1
TCGATAG	100	0.0	39.600002	1
TACGCGC	50	1.3496901E-9	39.600002	34
TAACGGG	730	0.0	39.17808	3
CTAGACG	80	0.0	38.500004	1
CTATCGA	40	4.1269777E-7	38.500004	43
GCACGAC	40	4.1269777E-7	38.500004	34
TCGTCGG	40	4.1269777E-7	38.500004	2
CGCTTTA	40	4.1269777E-7	38.500004	12