##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546651_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2336499 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.965711947661866 31.0 31.0 33.0 30.0 34.0 2 31.347454032721608 31.0 31.0 34.0 30.0 34.0 3 31.49639481977095 31.0 31.0 34.0 30.0 34.0 4 35.26475466071246 37.0 35.0 37.0 33.0 37.0 5 35.052125423550365 37.0 35.0 37.0 32.0 37.0 6 35.127789911316036 37.0 35.0 37.0 32.0 37.0 7 35.6753095122232 37.0 35.0 37.0 35.0 37.0 8 35.71389373588433 37.0 35.0 37.0 35.0 37.0 9 37.48166038162225 39.0 37.0 39.0 35.0 39.0 10 36.75251990264066 39.0 37.0 39.0 32.0 39.0 11 36.31846365010214 38.0 35.0 39.0 32.0 39.0 12 35.647154995572436 37.0 35.0 39.0 30.0 39.0 13 35.374863417446356 37.0 35.0 39.0 30.0 39.0 14 36.310257355128336 38.0 35.0 40.0 30.0 41.0 15 36.57850356452111 38.0 35.0 40.0 31.0 41.0 16 36.67862173277198 38.0 35.0 40.0 31.0 41.0 17 36.58913571116444 38.0 35.0 40.0 31.0 41.0 18 36.513835015551045 38.0 35.0 40.0 31.0 41.0 19 36.4337245596938 38.0 35.0 40.0 31.0 41.0 20 36.25966328254367 38.0 34.0 40.0 30.0 41.0 21 36.132900977060125 38.0 34.0 40.0 30.0 41.0 22 36.04252088273952 37.0 34.0 40.0 30.0 41.0 23 35.89060384789379 37.0 34.0 40.0 30.0 41.0 24 35.85193274210689 37.0 34.0 40.0 30.0 41.0 25 35.69201185192033 37.0 34.0 40.0 30.0 41.0 26 35.57710831461944 37.0 34.0 40.0 29.0 41.0 27 35.398149539118144 37.0 34.0 40.0 29.0 41.0 28 35.396494926811435 36.0 34.0 40.0 29.0 41.0 29 35.303022171205725 36.0 34.0 40.0 29.0 41.0 30 35.23187384201748 36.0 34.0 40.0 28.0 41.0 31 35.080866287552446 36.0 34.0 40.0 27.0 41.0 32 34.80350858271285 36.0 34.0 40.0 25.0 41.0 33 34.54776398363534 36.0 33.0 40.0 24.0 41.0 34 34.44434557857718 36.0 33.0 40.0 24.0 41.0 35 34.18179635428905 36.0 33.0 40.0 23.0 41.0 36 33.91725440498798 36.0 33.0 40.0 22.0 41.0 37 33.926909448709374 36.0 33.0 40.0 23.0 41.0 38 33.888612834843926 36.0 33.0 40.0 23.0 41.0 39 33.8107433386447 36.0 33.0 40.0 21.0 41.0 40 33.73149357222066 36.0 33.0 40.0 21.0 41.0 41 33.753352772673985 36.0 33.0 40.0 21.0 41.0 42 33.5079582743241 36.0 33.0 40.0 19.0 41.0 43 33.54360733730252 36.0 33.0 40.0 20.0 41.0 44 33.340861262940834 35.0 32.0 40.0 18.0 41.0 45 33.178596267321325 35.0 32.0 40.0 18.0 41.0 46 33.2577313322197 35.0 32.0 40.0 18.0 41.0 47 33.13689113498444 35.0 32.0 40.0 18.0 41.0 48 33.17801419987768 35.0 32.0 40.0 18.0 41.0 49 33.11896645365566 36.0 32.0 40.0 18.0 41.0 50 32.610959388384074 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 4.0 13 6.0 14 21.0 15 89.0 16 294.0 17 864.0 18 1976.0 19 3863.0 20 6501.0 21 10250.0 22 15149.0 23 20829.0 24 29130.0 25 37959.0 26 47233.0 27 53888.0 28 59022.0 29 66302.0 30 76570.0 31 91290.0 32 110366.0 33 136997.0 34 208371.0 35 282696.0 36 173482.0 37 209325.0 38 285881.0 39 408140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.981652463793054 25.90705153308433 27.38015295534045 15.731143047782172 2 28.258518407240917 27.893955871583938 30.305341453174172 13.54218426800097 3 26.323358152517933 27.30409899597646 33.89370164506811 12.478841206437496 4 23.71034612041349 30.12139102135289 32.566373878182695 13.601888980050921 5 22.31560980766523 34.1335048720329 31.212168291105623 12.338717029196246 6 20.407070578673476 42.407679181544694 27.353317934225522 9.831932305556304 7 87.40709925405488 4.583181931599372 6.890608555792234 1.1191102585535024 8 88.06954336381055 3.784080369818262 6.260049758206616 1.886326508164566 9 82.97889277932497 6.61562448774855 8.175222844092806 2.2302598888336784 10 43.05356004860263 34.729182422076796 12.474732495070615 9.742525034249962 11 34.13667200371154 24.29994620156054 28.194362591210183 13.369019203517743 12 32.88039070421173 23.933414908373596 28.40527644137661 14.78091794603807 13 20.005401243484375 37.44730898665054 28.522417514409383 14.024872255455707 14 15.787766226306966 39.233057664480064 29.40861519735296 15.57056091186001 15 14.188407527672814 26.400867280491024 44.92631924944115 14.484405942395009 16 16.15575268810301 23.353059427802023 44.22120446017738 16.26998342391758 17 16.454575841889937 23.028813622432537 30.960295724500632 29.556314811176893 18 19.04190842795139 24.955970449805456 36.88304595893258 19.11907516331058 19 25.137096142562015 26.001594693599266 29.829201724460404 19.03210743937832 20 26.703199958570494 26.04863087893468 29.262156756754443 17.986012405740386 21 20.544412815926734 30.212467456652025 31.203736872988173 18.039382854433065 22 21.019824960335956 26.67782010606467 28.338124689974187 23.964230243625185 23 16.87353600408132 32.231599499935584 28.698236121650382 22.196628374332708 24 17.220636516429067 25.648630707738374 40.17057144043289 16.960161335399672 25 16.071481306005268 27.26523743429807 37.960384318589476 18.702896941107188 26 16.238269308054488 34.945403357758764 29.778313622218544 19.038013711968205 27 16.162557741304404 35.807248366038245 30.120107049050738 17.91008684360661 28 15.082266245352555 31.645294947697387 37.22796371836667 16.04447508858339 29 15.5031951650739 26.92340120838913 36.9860633366417 20.587340289895266 30 17.601976290167467 32.827705040746864 32.06125917451709 17.509059494568582 31 24.39680051221935 29.392693940806307 28.47033103801885 17.74017450895549 32 25.857062211453975 27.760850742927772 29.670973537758844 16.71111350785941 33 25.14458598099122 29.542490709390417 27.096566272872362 18.216357036746004 34 18.38729654923884 29.51420051966639 29.703886027770608 22.39461690332416 35 18.141287456146994 27.514028467377898 32.723104097198416 21.621579979276685 36 27.388584373457896 26.260785902326518 28.27195731733675 18.07867240687884 37 19.090699375433072 32.98139652531415 30.118651880441632 17.809252218811135 38 19.28196844937661 33.11852476718372 26.87431066737028 20.725196116069384 39 19.780834487838426 32.66892046604771 28.48047441920583 19.069770626908035 40 24.04499210143039 26.949251850739074 27.726311887999955 21.279444159830586 41 17.068400200470876 26.061812994570083 30.124472554878047 26.745314250080998 42 19.826971892562334 26.822908976207565 27.89083153898204 25.45928759224806 43 19.981818952201564 26.330633995563446 29.83955910103107 23.847987951203915 44 18.46228053168437 29.852741216666473 31.471231102602655 20.2137471490465 45 17.16414173513449 35.59984404016436 26.443623558152602 20.792390666548542 46 19.928876494276267 33.191711188406245 28.450557864565745 18.428854452751743 47 19.497247805370343 28.55490201365376 29.052526878890166 22.89532330208573 48 19.75639621502085 26.402365248176867 33.820943214612974 20.02029532218931 49 20.811949844617953 25.077905019432922 33.62226990039371 20.48787523555542 50 18.96114657014619 32.915571545290625 28.753104538028907 19.37017734653428 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3786.0 1 4133.5 2 4481.0 3 12406.5 4 20332.0 5 16365.0 6 12398.0 7 13672.5 8 14947.0 9 16424.0 10 17901.0 11 18916.0 12 19931.0 13 20115.5 14 20300.0 15 20211.5 16 20123.0 17 19987.5 18 19852.0 19 18896.0 20 17940.0 21 18553.0 22 19166.0 23 20821.5 24 22477.0 25 25288.0 26 28099.0 27 32862.5 28 37626.0 29 42613.0 30 47600.0 31 57185.0 32 66770.0 33 71127.0 34 75484.0 35 86657.0 36 97830.0 37 102234.0 38 106638.0 39 122597.5 40 138557.0 41 169858.5 42 201160.0 43 223331.0 44 245502.0 45 235110.5 46 224719.0 47 206801.0 48 188883.0 49 177169.0 50 165455.0 51 144312.0 52 123169.0 53 107130.5 54 91092.0 55 82042.5 56 72993.0 57 65413.0 58 57833.0 59 52798.5 60 47764.0 61 42323.5 62 36883.0 63 31673.0 64 26463.0 65 21417.0 66 16371.0 67 12911.5 68 9452.0 69 8219.5 70 6987.0 71 5212.5 72 3438.0 73 3039.5 74 2641.0 75 2138.0 76 1635.0 77 1252.0 78 869.0 79 762.0 80 655.0 81 410.5 82 166.0 83 121.5 84 77.0 85 58.0 86 39.0 87 24.5 88 10.0 89 6.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2336499.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.816739471283167 #Duplication Level Percentage of deduplicated Percentage of total 1 82.60035469092865 18.02070418527573 2 6.360795378015689 2.775436311846208 3 2.177239565095123 1.425008050747505 4 1.1137763888241892 0.9719587721697567 5 0.7088112906897199 0.773197563164079 6 0.5366061484504894 0.7024197923659815 7 0.41842919634290515 0.6390132534654086 8 0.3415835858972981 0.5961792080950421 9 0.2941980742896985 0.5776598465758407 >10 3.369164318532157 17.116310215607623 >50 1.0774893971889985 17.004592128729286 >100 0.9932023868325406 37.540133249621874 >500 0.0071567819250331925 0.9979364203274625 >1k 9.939974895879433E-4 0.4168875167190043 >5k 0.0 0.0 >10k+ 1.987994979175887E-4 0.44256348528929673 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10204 0.43672177903778264 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3693 0.15805699039460322 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2668 0.1141879367378287 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04425424534741937 0.0 2 0.0 0.0 0.0 0.15048155381192116 0.0 3 0.0 0.0 0.0 0.21818969321193804 0.0 4 0.0 0.0 0.0 0.3946930856807557 0.0 5 0.0 0.0 0.0 0.5839078039408534 0.0 6 0.0 0.0 0.0 1.0276486315637199 0.0 7 0.0 0.0 0.0 1.2142954052195185 0.0 8 0.0 0.0 0.0 1.7310514577579532 0.0 9 0.0 0.0 0.0 1.9994444679839367 0.0 10 0.0 0.0 0.0 2.427520833520579 0.0 11 0.0 0.0 0.0 2.7551049668756544 0.0 12 0.0 0.0 0.0 3.0475938573053103 0.0 13 0.0 0.0 0.0 3.206549628311418 0.0 14 0.0 0.0 0.0 3.2859419156609952 0.0 15 0.0 0.0 0.0 3.357501971967461 0.0 16 0.0 0.0 0.0 3.4724174930098406 0.0 17 0.0 0.0 0.0 3.604238649363856 0.0 18 0.0 0.0 0.0 3.8125417558492427 0.0 19 0.0 0.0 0.0 3.9058009440620345 0.0 20 0.0 0.0 0.0 4.003853628869518 0.0 21 0.0 0.0 0.0 4.117570775763225 0.0 22 0.0 0.0 0.0 4.237664985090942 0.0 23 0.0 0.0 0.0 4.369486141444956 0.0 24 0.0 0.0 0.0 4.477810604669636 0.0 25 0.0 0.0 0.0 4.571112591959166 0.0 26 0.0 0.0 0.0 4.658208713121641 0.0 27 0.0 0.0 0.0 4.747787180734937 0.0 28 0.0 0.0 0.0 4.836381269583253 0.0 29 0.0 0.0 0.0 4.933663571009446 0.0 30 0.0 0.0 0.0 5.074986122399368 0.0 31 5.563879975981159E-4 0.0 0.0 5.1826258003962336 0.0 32 5.563879975981159E-4 0.0 0.0 5.286327963333175 0.0 33 5.563879975981159E-4 0.0 0.0 5.386991391821696 0.0 34 5.563879975981159E-4 0.0 0.0 5.494331476281394 0.0 35 5.563879975981159E-4 0.0 0.0 5.62662342247953 0.0 36 5.991870743364325E-4 0.0 0.0 5.747231220728106 0.0 37 5.991870743364325E-4 0.0 0.0 5.868095813437113 0.0 38 5.991870743364325E-4 0.0 0.0 5.994866678736006 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGA 20 7.858151E-4 44.000004 23 CTATTCG 20 7.858151E-4 44.000004 14 CGTCGTT 20 7.858151E-4 44.000004 22 GCGTACA 20 7.858151E-4 44.000004 37 TGCGTAC 20 7.858151E-4 44.000004 36 CGGTCTA 120 0.0 44.0 31 GTCGGAC 25 4.4442568E-5 44.0 9 CGTTTTT 10610 0.0 41.532516 1 TAGTGCG 75 0.0 41.066666 1 CGACGGT 130 0.0 40.615387 28 CTATGCG 225 0.0 40.08889 1 ATCGACG 55 7.8216544E-11 40.000004 1 TCGATAG 100 0.0 39.600002 1 TACGCGC 50 1.3496901E-9 39.600002 34 TAACGGG 730 0.0 39.17808 3 CTAGACG 80 0.0 38.500004 1 CTATCGA 40 4.1269777E-7 38.500004 43 GCACGAC 40 4.1269777E-7 38.500004 34 TCGTCGG 40 4.1269777E-7 38.500004 2 CGCTTTA 40 4.1269777E-7 38.500004 12 >>END_MODULE