##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546650_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1813301 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.944769235774977 31.0 31.0 33.0 30.0 34.0 2 31.324149162218518 31.0 31.0 34.0 30.0 34.0 3 31.465035314048798 31.0 31.0 34.0 30.0 34.0 4 35.24671910510169 37.0 35.0 37.0 33.0 37.0 5 35.036892385764965 37.0 35.0 37.0 32.0 37.0 6 35.11478734087722 37.0 35.0 37.0 32.0 37.0 7 35.68022959232913 37.0 35.0 37.0 35.0 37.0 8 35.72656001402966 37.0 35.0 37.0 35.0 37.0 9 37.49400954392018 39.0 37.0 39.0 35.0 39.0 10 36.70868873948672 39.0 37.0 39.0 32.0 39.0 11 36.28794833290226 38.0 35.0 39.0 31.0 39.0 12 35.85000945788923 37.0 35.0 39.0 31.0 39.0 13 35.6965760235063 37.0 35.0 39.0 30.0 39.0 14 36.63018329554773 38.0 35.0 40.0 31.0 41.0 15 36.81510571052462 38.0 35.0 40.0 31.0 41.0 16 36.866714902820874 38.0 35.0 40.0 31.0 41.0 17 36.77346066648615 38.0 35.0 40.0 31.0 41.0 18 36.689936750710444 38.0 35.0 40.0 31.0 41.0 19 36.66072814165988 38.0 35.0 40.0 31.0 41.0 20 36.52662961085887 38.0 35.0 40.0 31.0 41.0 21 36.428219032582014 38.0 35.0 40.0 30.0 41.0 22 36.36062297434348 38.0 35.0 40.0 30.0 41.0 23 36.17712834217816 38.0 34.0 40.0 30.0 41.0 24 36.13737818486837 38.0 34.0 40.0 30.0 41.0 25 35.984863516867854 38.0 34.0 40.0 30.0 41.0 26 35.86976348659158 38.0 34.0 40.0 30.0 41.0 27 35.694422492459886 38.0 34.0 40.0 29.0 41.0 28 35.66099119782099 38.0 34.0 40.0 29.0 41.0 29 35.54864470928985 37.0 34.0 40.0 29.0 41.0 30 35.51184221483361 38.0 34.0 40.0 28.0 41.0 31 35.43522834874078 38.0 34.0 40.0 27.0 41.0 32 35.227406260736636 38.0 34.0 40.0 27.0 41.0 33 35.02822697390009 38.0 34.0 40.0 26.0 41.0 34 34.94788399719627 38.0 34.0 40.0 25.0 41.0 35 34.726327840772164 37.0 33.0 40.0 24.0 41.0 36 34.528759428247156 37.0 33.0 40.0 24.0 41.0 37 34.624420876622246 37.0 33.0 40.0 24.0 41.0 38 34.578705355591815 37.0 33.0 40.0 24.0 41.0 39 34.48858297657146 37.0 33.0 40.0 23.0 41.0 40 34.490573820893495 37.0 33.0 40.0 23.0 41.0 41 34.51342330920239 37.0 33.0 40.0 23.0 41.0 42 34.27718729543523 37.0 33.0 40.0 23.0 41.0 43 34.33093347436526 37.0 33.0 40.0 23.0 41.0 44 34.14957417439245 37.0 33.0 40.0 23.0 41.0 45 33.978658810644234 37.0 33.0 40.0 23.0 41.0 46 34.05601000606077 37.0 33.0 40.0 23.0 41.0 47 33.89890260910902 37.0 33.0 40.0 23.0 41.0 48 33.963112577558825 37.0 33.0 40.0 23.0 41.0 49 33.87522920905023 36.0 33.0 40.0 23.0 41.0 50 33.3955041110108 36.0 32.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 6.0 14 12.0 15 41.0 16 186.0 17 489.0 18 1059.0 19 2251.0 20 3808.0 21 5852.0 22 8856.0 23 12330.0 24 18191.0 25 24462.0 26 31545.0 27 37805.0 28 43015.0 29 48993.0 30 58042.0 31 68838.0 32 83115.0 33 103434.0 34 147382.0 35 187562.0 36 149025.0 37 182134.0 38 249745.0 39 345121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.742441547211413 25.315819050449978 29.89928313059994 14.042456271738669 2 30.748838720102178 26.13653221390161 29.962813675170313 13.151815390825902 3 27.102725912576016 25.546227570601904 33.55835572803412 13.792690788787962 4 24.180376010381067 28.834705324708914 32.56365049156207 14.421268173347942 5 21.417403950033666 33.42197461976804 31.29717570331677 13.863445726881526 6 20.89608950747835 42.01139248254978 27.61345193103627 9.479066078935599 7 89.64871248623368 3.1927959009563223 6.087957818365512 1.0705337944444966 8 90.41455334773433 2.5986308947052916 5.538186986054715 1.4486287715056685 9 84.76640116560901 5.681516747633184 7.341748556913606 2.21033352984419 10 39.27224437641627 38.09902492746654 12.967510633921231 9.661220062195962 11 28.768748266283424 26.023975059849413 30.627733619514906 14.579543054352257 12 29.295191476759786 24.62415230565692 29.925699042795433 16.15495717478786 13 21.38839607985657 32.07410132129194 30.93860313318087 15.598899465670618 14 18.193063368960807 33.890181497721564 30.846340458644207 17.070414674673426 15 16.276282867543777 26.581246025894213 39.90810130254161 17.234369804020403 16 19.11795118405604 24.906124245230107 38.61261864411921 17.363305926594645 17 19.606231949356452 23.79345734657401 31.53524980132918 25.06506090274036 18 20.501174377557835 25.715752652207218 34.46030195759005 19.322771012644896 19 24.72794092100539 26.29789538526698 29.967446110711897 19.006717583015725 20 25.942135365281327 26.901159818474706 28.89525787500255 18.261446941241417 21 21.989675183546474 29.066161657661908 30.719941146009404 18.224222012782214 22 22.05155128685199 26.091145375202462 29.47205124797262 22.38525208997293 23 19.33959116550424 29.881856349276813 29.700970770986174 21.07758171423277 24 18.893994984837047 26.74988873882494 36.51263634664074 17.843479929697274 25 18.89658694281865 27.825606449232644 33.81975744788097 19.458049160067745 26 18.477903006726407 32.29375597322232 29.65244049388381 19.57590052616747 27 18.116131850145123 32.14347755833146 30.465488079474945 19.27490251204847 28 17.22339534363021 29.579259041935124 34.7856202583024 18.41172535613227 29 18.18230950073926 26.28708636900327 34.66021361042651 20.870390519830963 30 19.176242664621043 30.197799482821665 31.87887725203924 18.74708060051806 31 23.833329381056977 28.216550920117513 29.266955679172955 18.68316401965256 32 24.3534857147269 28.02684165508098 28.975332832221458 18.644339797970662 33 23.758603783927764 28.029433613062587 29.15191686322348 19.06004573978617 34 20.176628149435754 27.83073521715369 29.945331745805028 22.04730488760553 35 19.456891051182346 27.70003435723027 32.00571774901133 20.837356842576053 36 24.116404281473404 28.232929888639557 28.75198326146624 18.898682568420796 37 19.982065856688987 31.796596373133863 29.52140874570742 18.69992902446974 38 19.89829598064524 31.509550813681784 28.5263726209824 20.06578058469057 39 19.948149810759492 31.68431495929247 29.21660551667925 19.150929713268784 40 22.875352740664677 27.96888106276895 28.71155974656166 20.444206450004714 41 18.432405871942937 27.573965932848438 29.36236179211284 24.631266403095793 42 20.19515789160211 27.948917471506384 28.153571855968757 23.702352780922748 43 20.399260795642864 27.54843238932753 29.29524662480195 22.75706019022766 44 18.99596371479418 30.19934362800219 30.11948926295193 20.6852033942517 45 18.727668489677114 32.82891257436024 27.263206715266797 21.180212220695847 46 20.253835408462244 31.06902825289348 28.243077128397324 20.434059210246946 47 19.54562425102065 28.807517339923155 29.435874132314492 22.210984276741698 48 20.671085495458282 27.47045305771077 31.615986535054024 20.24247491177692 49 20.3266308241158 27.59668692621909 31.883399391496503 20.193282858168608 50 19.432350172420353 31.375816811439467 29.2435177612542 19.94831525488598 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1447.0 1 1850.0 2 2253.0 3 8029.5 4 13806.0 5 10997.0 6 8188.0 7 8504.5 8 8821.0 9 9400.5 10 9980.0 11 10181.0 12 10382.0 13 10514.0 14 10646.0 15 10907.5 16 11169.0 17 11231.5 18 11294.0 19 11587.5 20 11881.0 21 12066.0 22 12251.0 23 13958.0 24 15665.0 25 18583.5 26 21502.0 27 25794.5 28 30087.0 29 35858.5 30 41630.0 31 46642.0 32 51654.0 33 60014.0 34 68374.0 35 77760.0 36 87146.0 37 92226.5 38 97307.0 39 105231.0 40 113155.0 41 127237.0 42 141319.0 43 154004.5 44 166690.0 45 164950.5 46 163211.0 47 154236.5 48 145262.0 49 134054.0 50 122846.0 51 113991.0 52 105136.0 53 91612.0 54 78088.0 55 67758.0 56 57428.0 57 53107.0 58 48786.0 59 45480.0 60 42174.0 61 38202.5 62 34231.0 63 29647.5 64 25064.0 65 20231.0 66 15398.0 67 12832.0 68 10266.0 69 8665.5 70 7065.0 71 5739.0 72 4413.0 73 3804.0 74 3195.0 75 2714.5 76 2234.0 77 1551.5 78 869.0 79 691.0 80 513.0 81 405.0 82 297.0 83 214.0 84 131.0 85 78.0 86 25.0 87 20.5 88 16.0 89 10.5 90 5.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1813301.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.953690469426085 #Duplication Level Percentage of deduplicated Percentage of total 1 78.0277172929572 18.690517880713823 2 6.293415402474486 3.0150104909278492 3 2.479638213889375 1.7818945875499999 4 1.562745627153836 1.4973410014116852 5 1.0299981101785713 1.2336127957655663 6 0.814519365492279 1.170644685741323 7 0.707297212005005 1.185966494037915 8 0.582212823263635 1.1156916604630231 9 0.5175324578943836 1.1157131073855018 >10 6.311153801829635 34.856670352596005 >50 1.2800450954985878 21.060292786529438 >100 0.39302484991135744 12.727145205060456 >500 2.3324915054546633E-4 0.05380452370109029 >1k 2.3324915054546633E-4 0.11699550636561065 >5k 2.3324915054546633E-4 0.3786989217507684 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6778 0.3737934297725529 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2094 0.11548000028676982 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029338758430067596 0.0 2 0.0 0.0 0.0 0.11619692483487297 0.0 3 0.0 0.0 0.0 0.17564651428527311 0.0 4 0.0 0.0 0.0 0.2822476797839962 0.0 5 0.0 0.0 0.0 0.45419927524442993 0.0 6 0.0 0.0 0.0 0.7507302979483274 0.0 7 0.0 0.0 0.0 0.8999609000381072 0.0 8 0.0 0.0 0.0 1.3145638810103784 0.0 9 0.0 0.0 0.0 1.5086849894198482 0.0 10 0.0 0.0 0.0 1.7862450856200929 0.0 11 0.0 0.0 0.0 2.038933414805374 0.0 12 0.0 0.0 0.0 2.257485105892513 0.0 13 0.0 0.0 0.0 2.37318569834793 0.0 14 0.0 0.0 0.0 2.4277822600880934 0.0 15 0.0 0.0 0.0 2.4829854502920363 0.0 16 0.0 0.0 0.0 2.5833548870264784 0.0 17 0.0 0.0 0.0 2.7070519455953534 0.0 18 0.0 0.0 0.0 2.8846286413562887 0.0 19 0.0 0.0 0.0 2.9696117743275936 0.0 20 0.0 0.0 0.0 3.067499549164755 0.0 21 0.0 0.0 0.0 3.180001555174789 0.0 22 0.0 0.0 0.0 3.316051775187903 0.0 23 0.0 0.0 0.0 3.4659441537836244 0.0 24 0.0 0.0 0.0 3.580541785395806 0.0 25 0.0 0.0 0.0 3.6814075545097036 0.0 26 0.0 0.0 0.0 3.7841483570571017 0.0 27 0.0 0.0 0.0 3.8885987489115155 0.0 28 0.0 0.0 0.0 4.002644900102079 0.0 29 0.0 0.0 0.0 4.123970592857997 0.0 30 0.0 0.0 0.0 4.292116973409269 0.0 31 0.0 0.0 0.0 4.425078903061323 0.0 32 0.0 0.0 0.0 4.560301902442011 0.0 33 0.0 0.0 0.0 4.695966086159992 0.0 34 0.0 0.0 0.0 4.836648741714696 0.0 35 0.0 0.0 0.0 4.993489773622802 0.0 36 0.0 0.0 0.0 5.139025456887742 0.0 37 0.0 0.0 0.0 5.2992305193677165 0.0 38 0.0 0.0 0.0 5.4597113220585 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGACG 20 7.857688E-4 44.0 1 TAGTACG 35 1.4466968E-7 44.0 1 CGTTTTT 7270 0.0 41.57909 1 TATAGCG 115 0.0 40.17391 1 ATCGTAG 45 2.3523171E-8 39.11111 1 ACGGGAT 1015 0.0 38.798027 5 AGGGCGA 1855 0.0 38.781673 6 CGCATCG 40 4.1263047E-7 38.5 21 CGACAGG 190 0.0 38.210526 2 CGTTGAT 320 0.0 37.8125 25 TGCGAGG 615 0.0 37.560974 2 CGAGGGA 1270 0.0 37.41732 4 TAATCGT 330 0.0 37.333332 21 TTAATCG 325 0.0 37.23077 20 TAGCGCG 65 1.0913936E-11 37.23077 1 AGGGATC 2775 0.0 37.1027 6 AGGGATT 4745 0.0 37.04531 6 GCGATGA 435 0.0 36.91954 9 TAGGGAT 4155 0.0 36.799038 5 GGGCGAT 3665 0.0 36.796722 7 >>END_MODULE