##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546649_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1145978 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07925544818487 31.0 31.0 33.0 30.0 34.0 2 31.458792402646473 31.0 31.0 34.0 30.0 34.0 3 31.62083565304046 31.0 31.0 34.0 30.0 34.0 4 35.408383930581564 37.0 35.0 37.0 33.0 37.0 5 35.230594304602704 37.0 35.0 37.0 33.0 37.0 6 35.292352907298394 37.0 35.0 37.0 32.0 37.0 7 35.70369937293735 37.0 35.0 37.0 35.0 37.0 8 35.73789549188553 37.0 35.0 37.0 35.0 37.0 9 37.546143119675946 39.0 37.0 39.0 35.0 39.0 10 36.84321863072415 39.0 37.0 39.0 32.0 39.0 11 36.479503969535195 38.0 35.0 39.0 32.0 39.0 12 35.849972687084744 37.0 35.0 39.0 31.0 39.0 13 35.622119272795814 37.0 35.0 39.0 30.0 39.0 14 36.510700030890646 38.0 35.0 40.0 31.0 41.0 15 36.75848052929463 38.0 35.0 40.0 31.0 41.0 16 36.84140358715438 38.0 35.0 40.0 31.0 41.0 17 36.769910940698686 38.0 35.0 40.0 31.0 41.0 18 36.7019070174122 38.0 35.0 40.0 31.0 41.0 19 36.63348772838571 38.0 35.0 40.0 31.0 41.0 20 36.48751633975521 38.0 35.0 40.0 31.0 41.0 21 36.3851662073792 38.0 35.0 40.0 31.0 41.0 22 36.30209916769781 38.0 35.0 40.0 30.0 41.0 23 36.122244929658336 38.0 34.0 40.0 30.0 41.0 24 36.05530298138358 38.0 34.0 40.0 30.0 41.0 25 35.90661251786683 37.0 34.0 40.0 30.0 41.0 26 35.77134726844669 37.0 34.0 40.0 30.0 41.0 27 35.59432641813368 37.0 34.0 40.0 29.0 41.0 28 35.54610297928931 37.0 34.0 40.0 29.0 41.0 29 35.40722073198613 37.0 34.0 40.0 29.0 41.0 30 35.38155095473037 37.0 34.0 40.0 29.0 41.0 31 35.2873353589685 37.0 34.0 40.0 28.0 41.0 32 35.11539139494825 37.0 34.0 40.0 27.0 41.0 33 34.911066355549586 37.0 34.0 40.0 26.0 41.0 34 34.75031283323066 37.0 34.0 40.0 25.0 41.0 35 34.531273724277426 37.0 33.0 40.0 24.0 41.0 36 34.300041536574 36.0 33.0 40.0 23.0 41.0 37 34.33185366560266 37.0 33.0 40.0 23.0 41.0 38 34.270647429531806 36.0 33.0 40.0 23.0 41.0 39 34.199203649633766 36.0 33.0 40.0 23.0 41.0 40 34.108863346416776 36.0 33.0 40.0 23.0 41.0 41 34.10721933579877 36.0 33.0 40.0 23.0 41.0 42 33.89751286673915 36.0 33.0 40.0 23.0 41.0 43 33.92609543987756 36.0 33.0 40.0 23.0 41.0 44 33.72538478051062 35.0 33.0 40.0 23.0 41.0 45 33.54366488710953 35.0 32.0 40.0 23.0 41.0 46 33.60189026316387 35.0 33.0 40.0 23.0 41.0 47 33.468261170807814 35.0 32.0 40.0 23.0 41.0 48 33.50118152355456 35.0 32.0 39.0 23.0 41.0 49 33.40031571286709 35.0 32.0 39.0 22.0 41.0 50 32.91947838440179 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 2.0 14 10.0 15 38.0 16 110.0 17 248.0 18 650.0 19 1203.0 20 2317.0 21 3615.0 22 5523.0 23 7949.0 24 11237.0 25 15456.0 26 20178.0 27 23930.0 28 26940.0 29 30717.0 30 36258.0 31 44272.0 32 53926.0 33 68691.0 34 104516.0 35 133461.0 36 97764.0 37 118065.0 38 150961.0 39 187937.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.67630094120481 24.005434659304107 28.36075387136577 13.957510528125322 2 31.340915794195002 25.627978896628033 29.48267767793099 13.548427631245975 3 28.989823539369862 25.765154304881943 31.837609447999878 13.407412707748318 4 24.900390757937764 28.50011082237181 31.762040807066107 14.837457612624327 5 22.18855859362047 33.262418650270774 30.46437191638932 14.084650839719437 6 21.801378385972505 41.2945100167717 27.273298440284194 9.6308131569716 7 88.55082732827331 3.8303527641891906 6.507891076443004 1.1109288310944887 8 89.1039793085033 3.0780695615448117 6.224465042086322 1.5934860878655612 9 84.29742979359115 4.968943557380682 8.253125278146701 2.4805013708814654 10 46.0048098654599 26.661070282326538 15.071668042492961 12.262451809720606 11 37.528032824364864 24.71557045597734 22.73132643035032 15.025070289307473 12 34.37884496910063 22.088992982413274 26.736551661550223 16.795610386935873 13 23.346521486450875 32.197389478681096 28.013539526936814 16.44254950793122 14 19.902476312808798 32.822532369731356 29.716539060959285 17.558452256500562 15 18.624354045191094 23.449664827771564 39.95800966510701 17.967971461930336 16 20.89804516317067 20.57465326559498 38.628926558799556 19.898375012434794 17 21.802425526493526 20.85223276537595 29.677620338261292 27.66772136986923 18 23.41153146046434 22.53926340645283 32.84103185226942 21.20817328081342 19 27.48848581735426 24.750038831460987 26.96570091223392 20.795774438950833 20 29.248990818322866 23.84208073802464 27.268760831359764 19.640167612292732 21 25.219506831719286 26.392129691843998 28.947763395108804 19.440600081327915 22 25.02770559295205 23.864506997516532 26.77337610320617 24.33441130632525 23 22.154264741556993 27.542151769056648 26.738296895751922 23.565286593634433 24 21.56044880442731 24.57952944995454 35.265598466986276 18.594423278631876 25 21.482349573901068 25.187394522407935 32.03194127635958 21.298314627331415 26 20.31251908849908 28.996106382496002 27.90376429564965 22.787610233355267 27 20.26068563270848 30.197176560108485 28.711022375647698 20.831115431535334 28 19.828042074106133 28.084221512105817 32.54320763574868 19.544528778039368 29 20.270022635687596 24.264078367996593 32.60280738373686 22.863091612578952 30 21.46638068095548 28.679695421727118 30.633921419084835 19.220002478232566 31 26.234185996589815 27.58901130737239 26.840044049711253 19.336758646326544 32 27.68098514980218 25.40607236788141 27.51911467759416 19.393827804722257 33 27.584473698447965 26.810898638542803 25.723268684041056 19.881358978968183 34 22.177650879859822 26.627910832494166 28.110574548551543 23.08386373909447 35 22.116654944510277 26.69361890018831 29.43101874556056 21.75870740974085 36 28.999684112609494 25.992994629914364 25.347607022124336 19.659714235351814 37 22.519280474843324 30.43985137585538 27.50969041290496 19.531177736396334 38 23.150008115339038 29.567234275003536 26.033833110234227 21.2489244994232 39 22.692756754492667 30.011919949597637 25.85887338151343 21.436449914396263 40 25.232334303101805 25.669340947208415 26.625642028031955 22.472682721657833 41 20.82125485829571 24.731888395763267 28.588594196398187 25.858262549542836 42 22.123112311056584 25.48556778576901 26.696062228070694 25.69525767510371 43 22.12389766644735 25.4991806125423 28.16642204300606 24.21049967800429 44 21.573014490679576 27.401573154109414 28.46668958740918 22.558722767801825 45 19.92036496337626 31.59685438987485 25.93409297560686 22.54868767114203 46 22.695287344085138 29.368626622849654 27.111253444656008 20.8248325884092 47 21.645528971760367 28.086752101698288 28.021044034004145 22.246674892537204 48 22.61727537526898 26.7761684779289 29.541579332238488 21.06497681456363 49 23.117459497477263 26.12877385080691 29.655194078769398 21.098572572946424 50 22.195365007007116 29.09418854463175 27.82557780341333 20.88486864494781 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1349.0 1 1828.0 2 2307.0 3 6401.0 4 10495.0 5 7866.0 6 5237.0 7 5587.0 8 5937.0 9 6300.5 10 6664.0 11 6793.0 12 6922.0 13 6972.5 14 7023.0 15 6583.5 16 6144.0 17 6311.0 18 6478.0 19 6360.0 20 6242.0 21 6064.5 22 5887.0 23 6715.0 24 7543.0 25 8265.0 26 8987.0 27 10103.0 28 11219.0 29 13341.5 30 15464.0 31 19370.0 32 23276.0 33 26064.5 34 28853.0 35 32464.0 36 36075.0 37 38439.5 38 40804.0 39 46644.0 40 52484.0 41 63583.0 42 74682.0 43 82083.0 44 89484.0 45 88650.0 46 87816.0 47 84698.0 48 81580.0 49 79780.0 50 77980.0 51 70931.5 52 63883.0 53 60158.0 54 56433.0 55 54721.0 56 53009.0 57 53382.0 58 53755.0 59 51544.5 60 49334.0 61 46302.0 62 43270.0 63 39638.5 64 36007.0 65 31268.5 66 26530.0 67 22556.0 68 18582.0 69 15851.0 70 13120.0 71 11485.5 72 9851.0 73 8137.5 74 6424.0 75 5251.0 76 4078.0 77 3241.5 78 2405.0 79 1857.5 80 1310.0 81 965.0 82 620.0 83 453.0 84 286.0 85 189.5 86 93.0 87 63.5 88 34.0 89 22.5 90 11.0 91 9.0 92 7.0 93 4.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1145978.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.767651498648746 #Duplication Level Percentage of deduplicated Percentage of total 1 76.15416799101726 18.100057249800496 2 5.973374499619397 2.8394616675573836 3 2.7568041108198886 1.9656827806802804 4 1.7148321122123322 1.6303012808701771 5 1.2366140884398504 1.4695706346178778 6 0.9938479141969653 1.4172858520375458 7 0.8394560123738206 1.3966328565382433 8 0.737587240087881 1.4024573177807131 9 0.5871121457186238 1.2558849183057714 >10 7.632330916526922 42.091986973320374 >50 1.13896590067398 18.408938726461198 >100 0.2326839730293339 7.162245611081648 >500 0.0018525794030997238 0.3418602680677496 >1k 0.0 0.0 >5k 3.705158806199447E-4 0.5176338628805338 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5878 0.5129243318807167 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03490468403407395 0.0 2 0.0 0.0 0.0 0.1292345926361588 0.0 3 0.0 0.0 0.0 0.1818534038175253 0.0 4 0.0 0.0 0.0 0.26545012207913243 0.0 5 0.0 0.0 0.0 0.38971079724043567 0.0 6 0.0 0.0 0.0 0.5965210501423238 0.0 7 0.0 0.0 0.0 0.6853534710090421 0.0 8 0.0 0.0 0.0 0.9415538518191449 0.0 9 0.0 0.0 0.0 1.0596189455644 0.0 10 0.0 0.0 0.0 1.2629387300628807 0.0 11 0.0 0.0 0.0 1.4389455993046987 0.0 12 0.0 0.0 0.0 1.5737649413863093 0.0 13 0.0 0.0 0.0 1.6473265629881202 0.0 14 0.0 0.0 0.0 1.6889503986987533 0.0 15 0.0 0.0 0.0 1.7313595898001533 0.0 16 0.0 0.0 0.0 1.8084116798053715 0.0 17 0.0 0.0 0.0 1.8877325742728046 0.0 18 0.0 0.0 0.0 1.9958498330683485 0.0 19 0.0 0.0 0.0 2.0480323356992893 0.0 20 0.0 0.0 0.0 2.111209813800963 0.0 21 0.0 0.0 0.0 2.188523688936437 0.0 22 0.0 0.0 0.0 2.266884704592933 0.0 23 0.0 0.0 0.0 2.3591203321529735 0.0 24 0.0 0.0 0.0 2.4357361136077658 0.0 25 0.0 0.0 0.0 2.5045856028649767 0.0 26 0.0 0.0 0.0 2.5693337917481838 0.0 27 0.0 0.0 0.0 2.644204339001272 0.0 28 0.0 0.0 0.0 2.7103487152458423 0.0 29 0.0 0.0 0.0 2.790891273654468 0.0 30 0.0 0.0 0.0 2.896477942857542 0.0 31 0.0 0.0 0.0 2.9788529971779565 0.0 32 0.0 0.0 0.0 3.062711500569819 0.0 33 0.0 0.0 0.0 3.1482279764533003 0.0 34 0.0 0.0 0.0 3.234529807727548 0.0 35 0.0 0.0 0.0 3.337934934178492 0.0 36 0.0 0.0 0.0 3.427203663595636 0.0 37 0.0 0.0 0.0 3.525634872571725 0.0 38 0.0 0.0 0.0 3.6402094979135726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACGG 80 0.0 41.25 2 CGTTTTT 4135 0.0 41.233376 1 ACATACG 420 0.0 39.809525 17 GCGATAA 100 0.0 39.600002 9 TACGGGA 195 0.0 39.48718 4 TACGGGT 145 0.0 39.448277 4 TCGTTAG 40 4.124522E-7 38.5 1 CGAAAGG 235 0.0 38.38298 2 CATACGA 430 0.0 38.372093 18 TGGGCGA 845 0.0 38.011833 6 GGGCGAT 2570 0.0 37.92218 7 ACGAGTA 35 7.2901876E-6 37.714287 37 ATAGGGC 545 0.0 37.541283 4 TAGGACG 65 1.0913936E-11 37.230766 1 TAGGGTA 545 0.0 37.137615 5 GCGATAT 95 0.0 37.05263 9 TAAGGGA 1050 0.0 36.87619 4 GGACTAA 895 0.0 36.871506 8 GCGATGA 275 0.0 36.8 9 TTACGGG 335 0.0 36.776115 3 >>END_MODULE