##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546648_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1277978 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98949042941271 31.0 31.0 33.0 30.0 34.0 2 31.363853681362276 31.0 31.0 34.0 30.0 34.0 3 31.49420256060746 31.0 31.0 34.0 30.0 34.0 4 35.26438952783225 37.0 35.0 37.0 33.0 37.0 5 35.03985436369014 37.0 35.0 37.0 32.0 37.0 6 35.132068783656685 37.0 35.0 37.0 32.0 37.0 7 35.70881188878056 37.0 35.0 37.0 35.0 37.0 8 35.76174550735615 37.0 35.0 37.0 35.0 37.0 9 37.52283998629084 39.0 37.0 39.0 35.0 39.0 10 36.76410626787003 39.0 37.0 39.0 32.0 39.0 11 36.32175358261253 38.0 35.0 39.0 32.0 39.0 12 35.691910971863365 37.0 35.0 39.0 30.0 39.0 13 35.431617758678165 37.0 35.0 39.0 30.0 39.0 14 36.36513461108094 38.0 35.0 40.0 30.0 41.0 15 36.632772238645735 38.0 35.0 40.0 31.0 41.0 16 36.724806686813075 38.0 35.0 40.0 31.0 41.0 17 36.65433599013441 38.0 35.0 40.0 31.0 41.0 18 36.57753106860994 38.0 35.0 40.0 31.0 41.0 19 36.539182990630515 38.0 35.0 40.0 31.0 41.0 20 36.39500288737365 38.0 35.0 40.0 31.0 41.0 21 36.2643112792239 38.0 34.0 40.0 30.0 41.0 22 36.19044850537333 38.0 34.0 40.0 30.0 41.0 23 36.01530621027905 38.0 34.0 40.0 30.0 41.0 24 35.99506642524363 37.0 34.0 40.0 30.0 41.0 25 35.84481814240934 37.0 34.0 40.0 30.0 41.0 26 35.747942452843475 37.0 34.0 40.0 30.0 41.0 27 35.56713339353259 37.0 34.0 40.0 29.0 41.0 28 35.568893987220434 37.0 34.0 40.0 29.0 41.0 29 35.484387837662304 37.0 34.0 40.0 29.0 41.0 30 35.43210133507775 37.0 34.0 40.0 29.0 41.0 31 35.32599622215719 37.0 34.0 40.0 28.0 41.0 32 35.072853366802875 37.0 34.0 40.0 27.0 41.0 33 34.84162090427222 37.0 33.0 40.0 25.0 41.0 34 34.737238825707486 37.0 34.0 40.0 25.0 41.0 35 34.50767305853466 37.0 33.0 40.0 24.0 41.0 36 34.27952280868685 37.0 33.0 40.0 23.0 41.0 37 34.30682766057006 37.0 33.0 40.0 23.0 41.0 38 34.29030859686161 37.0 33.0 40.0 23.0 41.0 39 34.216670396516996 37.0 33.0 40.0 23.0 41.0 40 34.15577576452803 37.0 33.0 40.0 23.0 41.0 41 34.20753017657581 37.0 33.0 40.0 23.0 41.0 42 33.98035177444369 36.0 33.0 40.0 23.0 41.0 43 34.02857091436629 37.0 33.0 40.0 23.0 41.0 44 33.84178835629408 36.0 33.0 40.0 22.0 41.0 45 33.6167970027653 36.0 32.0 40.0 21.0 41.0 46 33.738446201734305 36.0 33.0 40.0 22.0 41.0 47 33.63848908197168 36.0 32.0 40.0 22.0 41.0 48 33.71632140772376 36.0 33.0 40.0 22.0 41.0 49 33.66242298380723 36.0 33.0 40.0 22.0 41.0 50 33.15838066069995 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 3.0 14 16.0 15 34.0 16 132.0 17 360.0 18 816.0 19 1652.0 20 2774.0 21 4648.0 22 6848.0 23 9857.0 24 13653.0 25 18874.0 26 23552.0 27 27940.0 28 30815.0 29 34804.0 30 41173.0 31 48944.0 32 60048.0 33 74402.0 34 111436.0 35 147783.0 36 97817.0 37 118512.0 38 164367.0 39 236717.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.465095643273983 25.57735735669941 28.779055664495008 14.178491335531598 2 30.47423351575692 26.600066667814314 30.043396678190078 12.882303138238688 3 27.479268031218062 26.13159224963184 33.52397302613973 12.865166693010366 4 23.49156245256178 29.646910979688222 32.67317590756648 14.188350660183508 5 21.750530916807644 33.90074007533776 31.388959747350892 12.9597692605037 6 20.891752440182852 42.19462306862872 26.757189873378103 10.156434617810323 7 89.41914493050741 3.5556167633558635 6.067710085776124 0.9575282203606009 8 90.2732284906313 2.719139140110393 5.638203474551205 1.3694288947071076 9 84.69543294172513 5.855812854368385 7.411942928595015 2.0368112753114684 10 41.14030131974103 37.17520958889746 12.221650137952295 9.462838953409214 11 33.10808167276745 24.616933937829916 29.471242853945846 12.803741535456792 12 32.567618534904355 24.361843474613803 28.21097076788489 14.859567222596946 13 20.63454926454133 36.22394125720474 28.656518343821258 14.484991134432674 14 16.514525289167732 38.98541289443167 28.737896896503695 15.762164919896898 15 14.945562443171948 26.914547824766938 42.92969049545454 15.210199236606577 16 16.50051878827335 23.852132039831673 42.56450424029208 17.082844931602892 17 17.442553784180948 23.406975706937054 31.39537613323547 27.75509437564653 18 19.17810791735069 25.720161066935425 35.86110246029274 19.24062855542114 19 24.56075143703569 26.143094795059067 30.33455974985485 18.96159401805039 20 26.731915572881537 25.729472651328894 29.240644205142814 18.297967570646755 21 21.127828491570277 29.795426838333682 31.14365036017834 17.9330943099177 22 21.456316149417283 27.109778102596444 28.921624628905974 22.512281119080296 23 17.731917137853703 31.38700353214218 28.688365527419098 22.192713802585022 24 17.651712314296493 26.438639788791356 39.20490024084921 16.70474765606294 25 16.207477750008216 28.276699598897633 36.51768653294501 18.99813611814914 26 16.316712807262725 34.41835461956309 30.681279333447055 18.583653239727134 27 15.863418619099859 35.6677501490636 30.646771697165363 17.822059534671176 28 15.892918344447244 31.183791896261127 36.63412046216758 16.28916929712405 29 15.902151680232368 26.4104702897859 37.11143697309343 20.575941056888304 30 17.3927876692713 32.48060608242083 33.01285311640733 17.11375313190055 31 24.034138302850284 29.38219593764525 28.764736169167232 17.818929590337234 32 25.39730730888951 28.614107598096368 29.396593681581372 16.591991411432748 33 25.19229595501644 29.90716585105534 27.629974850897277 17.270563343030947 34 19.66504900710341 28.237027554464945 30.15239698961954 21.945526448812107 35 19.07114206973829 28.435231279411692 32.15759582715821 20.3360308236918 36 26.28245556652775 27.6496935002011 28.60158782076061 17.466263112510543 37 19.608475263267444 33.105812463125346 30.442777575200825 16.84293469840639 38 19.354871523609955 33.6065253079474 27.814250323557992 19.224352844884653 39 20.04478950341868 33.04070962097939 28.612777371754444 18.301723503847484 40 23.070350193821803 28.250721060925933 28.36770273040694 20.311226014845328 41 18.72301401119581 26.628783907078212 30.042927186539988 24.60527489518599 42 20.3228068088809 27.553525960540792 27.864798924551128 24.258868306027175 43 20.315294942479447 28.110030063115328 28.537971702173277 23.036703292231948 44 18.570976965174673 30.97408562588714 30.561950205715593 19.89298720322259 45 17.491380915790415 36.11353247082501 26.745530830734175 19.649555782650406 46 20.13829659039514 33.079051439070156 28.686252814993686 18.096399155541018 47 20.193383610672484 29.230080643015764 29.516940041221368 21.059595705090384 48 20.76185975032434 26.571114682725366 32.478571618603766 20.18845394834653 49 21.08174006125301 26.89506392128816 32.74759033410591 19.27560568335292 50 19.20471244418918 32.507680100909404 29.404340293807874 18.88326716109354 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1573.0 1 1767.0 2 1961.0 3 5852.5 4 9744.0 5 7797.0 6 5850.0 7 6364.5 8 6879.0 9 7466.5 10 8054.0 11 8490.0 12 8926.0 13 8833.0 14 8740.0 15 8608.0 16 8476.0 17 8515.5 18 8555.0 19 8738.0 20 8921.0 21 9082.5 22 9244.0 23 10166.0 24 11088.0 25 13946.5 26 16805.0 27 19615.0 28 22425.0 29 26128.0 30 29831.0 31 33184.5 32 36538.0 33 41999.0 34 47460.0 35 52747.0 36 58034.0 37 60431.0 38 62828.0 39 71645.5 40 80463.0 41 96626.5 42 112790.0 43 120857.5 44 128925.0 45 126062.0 46 123199.0 47 116514.5 48 109830.0 49 101497.5 50 93165.0 51 83084.5 52 73004.0 53 63802.0 54 54600.0 55 47407.5 56 40215.0 57 34197.5 58 28180.0 59 24415.5 60 20651.0 61 18647.0 62 16643.0 63 13298.0 64 9953.0 65 8172.0 66 6391.0 67 4784.5 68 3178.0 69 2745.5 70 2313.0 71 1622.5 72 932.0 73 789.5 74 647.0 75 506.5 76 366.0 77 284.5 78 203.0 79 202.5 80 202.0 81 134.0 82 66.0 83 58.5 84 51.0 85 46.5 86 42.0 87 34.0 88 26.0 89 14.5 90 3.0 91 2.5 92 2.0 93 4.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1277978.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.082941542967422 #Duplication Level Percentage of deduplicated Percentage of total 1 79.6319698368287 19.177720745316908 2 5.929457936682021 2.8559757774119467 3 2.3277988518055723 1.6818073101546087 4 1.4020994074263142 1.3506671226590876 5 0.9979543802376348 1.201683850090562 6 0.7540081592269271 1.0895240652949536 7 0.617261794501916 1.040583579958777 8 0.5221920944334838 1.006073734755305 9 0.45670920866692916 0.9899011057014508 >10 5.547092897555576 30.8697623632587 >50 1.3229602597083896 22.046944083477005 >100 0.48918368850687804 16.07882975944087 >500 3.278711048972478E-4 0.040901801381859136 >1k 9.836133146917435E-4 0.5696247010979378 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4680 0.36620348707098244 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1296 0.10141019641965666 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03325565854811272 0.0 2 0.0 0.0 0.0 0.1337268716675874 0.0 3 0.0 0.0 0.0 0.18623168786943123 0.0 4 0.0 0.0 0.0 0.2726181514861758 0.0 5 0.0 0.0 0.0 0.4155001103305378 0.0 6 0.0 0.0 0.0 0.7114363471045667 0.0 7 0.0 0.0 0.0 0.8486844061478367 0.0 8 0.0 0.0 0.0 1.2593331027607675 0.0 9 0.0 0.0 0.0 1.495800397189936 0.0 10 0.0 0.0 0.0 1.8760886337636484 0.0 11 0.0 0.0 0.0 2.2008203584099255 0.0 12 0.0 0.0 0.0 2.4714040460790403 0.0 13 0.0 0.0 0.0 2.6214848768914645 0.0 14 0.0 0.0 0.0 2.693004104921994 0.0 15 0.0 0.0 0.0 2.7606109025350984 0.0 16 0.0 0.0 0.0 2.882287488517017 0.0 17 0.0 0.0 0.0 3.0153101227094674 0.0 18 0.0 0.0 0.0 3.2011505675371565 0.0 19 0.0 0.0 0.0 3.2854243187284915 0.0 20 0.0 0.0 0.0 3.3817483556054957 0.0 21 0.0 0.0 0.0 3.493878611368897 0.0 22 0.0 0.0 0.0 3.6154769487424665 0.0 23 7.824860834850052E-5 0.0 0.0 3.7491255718017054 0.0 24 7.824860834850052E-5 0.0 0.0 3.8603168442649247 0.0 25 7.824860834850052E-5 0.0 0.0 3.9492855119571697 0.0 26 7.824860834850052E-5 0.0 0.0 4.038332428257763 0.0 27 7.824860834850052E-5 0.0 0.0 4.131291774975782 0.0 28 7.824860834850052E-5 0.0 0.0 4.224955359168937 0.0 29 7.824860834850052E-5 0.0 0.0 4.326522052805291 0.0 30 7.824860834850052E-5 0.0 0.0 4.468856271391213 0.0 31 7.824860834850052E-5 0.0 0.0 4.582707996538281 0.0 32 7.824860834850052E-5 0.0 0.0 4.69499474951838 0.0 33 7.824860834850052E-5 0.0 0.0 4.796404945938036 0.0 34 7.824860834850052E-5 0.0 0.0 4.909004693351529 0.0 35 7.824860834850052E-5 0.0 0.0 5.03936687486013 0.0 36 7.824860834850052E-5 0.0 0.0 5.15681803599123 0.0 37 7.824860834850052E-5 0.0 0.0 5.2764601581560875 0.0 38 7.824860834850052E-5 0.0 0.0 5.4003277051717635 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAG 20 7.856812E-4 44.000004 1 GAGTACG 80 0.0 44.000004 1 TTCGTAG 80 0.0 44.000004 1 AAGCGAT 20 7.856812E-4 44.000004 22 GTTACGC 20 7.856812E-4 44.000004 41 TCGACAT 20 7.856812E-4 44.000004 17 TATCGCG 40 8.314601E-9 44.000004 1 CGCCCAT 20 7.856812E-4 44.000004 32 TCCGGTA 20 7.856812E-4 44.000004 17 TAATCCG 20 7.856812E-4 44.000004 1 ACGCGAG 70 0.0 44.0 1 GTTAGCG 35 1.4462603E-7 44.0 1 GAACCGG 70 0.0 44.0 2 GTGCGCC 25 4.4431217E-5 44.0 41 TAATGCG 120 0.0 44.0 1 GCGTAAT 30 2.5279405E-6 44.0 33 CGACGGT 100 0.0 41.8 28 CGTTTTT 5440 0.0 41.735294 1 AGGCGAT 80 0.0 41.250004 6 CGTTAGG 155 0.0 41.161293 2 >>END_MODULE