##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546646_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3663052 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.951756895616004 31.0 31.0 33.0 30.0 34.0 2 31.32214857992734 31.0 31.0 34.0 30.0 34.0 3 31.497724029033712 31.0 31.0 34.0 30.0 34.0 4 35.2726344043164 37.0 35.0 37.0 33.0 37.0 5 35.063889892908975 37.0 35.0 37.0 32.0 37.0 6 35.13567675260957 37.0 35.0 37.0 32.0 37.0 7 35.69114443365805 37.0 35.0 37.0 35.0 37.0 8 35.735950786393424 37.0 35.0 37.0 35.0 37.0 9 37.50995017269752 39.0 37.0 39.0 35.0 39.0 10 36.70677484239918 39.0 37.0 39.0 32.0 39.0 11 36.26538471198334 38.0 35.0 39.0 31.0 39.0 12 35.92950659723094 37.0 35.0 39.0 31.0 39.0 13 35.84262549371398 37.0 35.0 39.0 30.0 39.0 14 36.80572839260813 39.0 35.0 41.0 31.0 41.0 15 36.95917366174436 39.0 35.0 41.0 31.0 41.0 16 36.98726335307279 39.0 35.0 41.0 31.0 41.0 17 36.890298581619916 38.0 35.0 40.0 31.0 41.0 18 36.83093715295333 38.0 35.0 40.0 31.0 41.0 19 36.819440455663745 38.0 35.0 40.0 31.0 41.0 20 36.71504144631307 38.0 35.0 40.0 31.0 41.0 21 36.63082587962169 38.0 35.0 40.0 31.0 41.0 22 36.569068907566695 38.0 35.0 40.0 30.0 41.0 23 36.37432419741789 38.0 35.0 40.0 30.0 41.0 24 36.34616707597927 38.0 35.0 40.0 30.0 41.0 25 36.19778015709305 38.0 34.0 40.0 30.0 41.0 26 36.09074372954574 38.0 34.0 40.0 30.0 41.0 27 35.90209857790717 38.0 34.0 40.0 29.0 41.0 28 35.858726821240865 38.0 34.0 40.0 29.0 41.0 29 35.768562936043494 38.0 34.0 40.0 29.0 41.0 30 35.743252621038415 38.0 34.0 40.0 29.0 41.0 31 35.723236798167214 38.0 34.0 40.0 29.0 41.0 32 35.583354263057146 38.0 34.0 40.0 28.0 41.0 33 35.421323803211095 38.0 34.0 40.0 27.0 41.0 34 35.36803982034653 38.0 34.0 40.0 27.0 41.0 35 35.18155161324491 38.0 34.0 40.0 26.0 41.0 36 35.00293143531678 38.0 34.0 40.0 25.0 41.0 37 35.12585106626933 38.0 34.0 40.0 26.0 41.0 38 35.09562162917698 38.0 34.0 40.0 26.0 41.0 39 35.01395366486744 38.0 34.0 40.0 25.0 41.0 40 35.023561500082444 38.0 34.0 40.0 25.0 41.0 41 35.04022492719186 38.0 34.0 40.0 25.0 41.0 42 34.799454935392674 38.0 33.0 40.0 24.0 41.0 43 34.879526143773006 38.0 33.0 40.0 25.0 41.0 44 34.6966646938127 38.0 33.0 40.0 24.0 41.0 45 34.51989051752473 37.0 33.0 40.0 24.0 41.0 46 34.5991367307917 37.0 33.0 40.0 24.0 41.0 47 34.45030182481712 37.0 33.0 40.0 23.0 41.0 48 34.50738509854624 37.0 33.0 40.0 24.0 41.0 49 34.43364112767168 37.0 33.0 40.0 24.0 41.0 50 33.950594203958886 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 8.0 14 20.0 15 79.0 16 268.0 17 735.0 18 1740.0 19 3491.0 20 5940.0 21 9640.0 22 14818.0 23 21264.0 24 30370.0 25 42071.0 26 54951.0 27 67310.0 28 78849.0 29 93196.0 30 112012.0 31 136014.0 32 165091.0 33 204348.0 34 287019.0 35 357568.0 36 307367.0 37 381054.0 38 529738.0 39 758088.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.46137373971213 24.490261126514174 30.164928043609535 12.883437090164158 2 29.31489916059068 26.080820037498786 30.90196371768678 13.702317084223756 3 27.73632479145805 26.43817232187804 32.061761612993756 13.763741273670153 4 24.119286321897697 29.64317732863197 31.80708327372912 14.430453075741212 5 22.065561722847505 34.15946593168756 30.360994056322433 13.413978289142497 6 21.367482634699154 42.60728485426906 26.28624982664729 9.738982684384496 7 91.61469725245506 2.6082621813722544 4.7799212241595255 0.9971193420131628 8 92.20278609203473 2.0508854365157796 4.416945213990956 1.3293832574585347 9 86.58421993463375 5.217234153378112 6.087492069454652 2.1110538425334937 10 38.64984717661666 40.394703651490616 11.335056122599406 9.620393049293321 11 25.82212865119032 25.60452322271155 32.68711446083758 15.886233665260555 12 27.635889416803256 23.843396162544238 30.759568796730157 17.761145623922346 13 21.344905832622633 30.013769938291894 31.373947189392887 17.267377039692583 14 18.26962871397949 31.830014971122438 30.650179140236066 19.250177174662003 15 16.99282456268707 26.750916994899338 38.125612194421485 18.13064624799211 16 19.761144531936754 25.467260634028673 36.79800341354695 17.973591420487615 17 19.526558727531032 25.56715001588839 31.13900648967036 23.767284766910215 18 19.923222493155983 26.44617111632595 33.54445964731049 20.08614674320758 19 23.090144502453143 27.290467074996478 29.991629930451435 19.627758492098938 20 25.019519242424078 26.923478017784074 29.689259120536644 18.3677436192552 21 22.241862796378538 29.056453471039994 30.86216084292552 17.83952288965595 22 22.027314927552215 26.70778356408809 29.43010364035236 21.834797868007332 23 19.83761082288758 29.405970758809868 29.602473565758824 21.153944852543727 24 19.14106051456545 26.280407703739943 35.994165520991785 18.584366260702822 25 18.802817978013962 27.818933501353516 32.93420350025061 20.444045020381914 26 19.30081800640559 31.446755328616682 29.555190589704978 19.69723607527275 27 18.423352985434004 31.500208023254928 30.06509326102933 20.011345730281743 28 17.83643803036375 29.650029538210216 33.68134004103682 18.832192390389217 29 18.70118141920999 26.19580612014244 33.3345800168821 21.768432443765473 30 19.80668033104635 29.654179083452814 31.3074179673125 19.23172261818833 31 22.023847873303463 28.495418574456494 29.367860461713345 20.112873090526698 32 23.698162079053205 27.417546898051132 29.881421284764727 19.002869738130936 33 23.05476416933202 28.511552661551075 29.103490750336057 19.330192418780843 34 19.742498877984808 27.930152233711127 30.184474585673364 22.142874302630702 35 19.266966453110683 27.663025258718687 31.51164657231183 21.558361715858798 36 22.811251382726756 28.281498597344513 28.606200512578035 20.3010495073507 37 19.588801906170048 31.122162611942173 30.359547175415475 18.929488306472308 38 18.84349444124735 30.823176957356868 29.87066522670167 20.462663374694106 39 19.447990364319153 31.318556220332116 29.53662683467229 19.69682658067644 40 22.337739131194425 27.883961243247434 29.703673330326737 20.074626295231408 41 18.556466028874283 27.264996511106038 30.708163575073467 23.470373884946213 42 19.392135301382563 27.313617169507832 29.824610734436746 23.46963679467286 43 19.68355895575602 28.372106101687883 29.684754679977242 22.259580262578854 44 19.291618027808504 28.77496688553698 30.605626128157613 21.327788958496903 45 18.73762643828152 30.97777481728351 28.72244237865037 21.562156365784595 46 19.593852339524528 31.021153944852543 28.950612767713917 20.434380947909013 47 19.26071483560703 28.70366022649965 30.0700890951043 21.96553584278902 48 19.633491416447267 27.26870926211258 31.958678173282824 21.13912114815733 49 19.836382339098655 27.820571479738753 31.472717286022693 20.8703288951399 50 19.24201458237557 29.950052579106167 30.442292383509706 20.365640455008556 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2146.0 1 3182.5 2 4219.0 3 13915.5 4 23612.0 5 18193.0 6 12774.0 7 13264.5 8 13755.0 9 14450.0 10 15145.0 11 15498.0 12 15851.0 13 15961.0 14 16071.0 15 16004.0 16 15937.0 17 16057.0 18 16177.0 19 17219.0 20 18261.0 21 20513.5 22 22766.0 23 27443.5 24 32121.0 25 37881.0 26 43641.0 27 54613.5 28 65586.0 29 79606.0 30 93626.0 31 108984.5 32 124343.0 33 139399.0 34 154455.0 35 171473.5 36 188492.0 37 198672.0 38 208852.0 39 222374.5 40 235897.0 41 264236.0 42 292575.0 43 303223.5 44 313872.0 45 310306.5 46 306741.0 47 296440.0 48 286139.0 49 269030.0 50 251921.0 51 226406.5 52 200892.0 53 180275.5 54 159659.0 55 141258.0 56 122857.0 57 114749.5 58 106642.0 59 99438.5 60 92235.0 61 83669.0 62 75103.0 63 63686.0 64 52269.0 65 41331.0 66 30393.0 67 24213.5 68 18034.0 69 14968.5 70 11903.0 71 9697.0 72 7491.0 73 6004.5 74 4518.0 75 3640.5 76 2763.0 77 2156.0 78 1549.0 79 1307.5 80 1066.0 81 749.5 82 433.0 83 285.5 84 138.0 85 107.5 86 77.0 87 48.0 88 19.0 89 16.0 90 13.0 91 16.0 92 19.0 93 11.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3663052.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.49959700314365 #Duplication Level Percentage of deduplicated Percentage of total 1 77.41511698676074 15.095635831930545 2 7.068251084301903 2.756560953218405 3 2.532778621934617 1.4816448727770768 4 1.427802644473897 1.113663046690551 5 0.9781387595946801 0.9536655812625534 6 0.7779390534142198 0.9101698820750594 7 0.6230888350456966 0.8504986826384533 8 0.5250339819460852 0.8190360848723568 9 0.46353976905202265 0.8134954822300249 >10 5.707238145959361 25.88694923357752 >50 1.590132199253364 21.997692627366984 >100 0.8875198271598306 26.46204317976807 >500 0.002565068327704115 0.3478737897898958 >1k 7.125189799178095E-4 0.18264832816430904 >5k 0.0 0.0 >10k+ 1.425037959835619E-4 0.32842242363821217 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11819 0.32265444225198003 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.044416513879682845 0.0 2 0.0 0.0 0.0 0.14646256727996218 0.0 3 0.0 0.0 0.0 0.20643987581939868 0.0 4 0.0 0.0 0.0 0.34356596630350866 0.0 5 0.0 0.0 0.0 0.5548378783593572 0.0 6 0.0 0.0 0.0 0.8751445515924972 0.0 7 0.0 0.0 0.0 1.0379323034453238 0.0 8 0.0 0.0 0.0 1.477511102763488 0.0 9 0.0 0.0 0.0 1.6769076715263664 0.0 10 0.0 0.0 0.0 1.9846838101124418 0.0 11 0.0 0.0 0.0 2.2585810957638603 0.0 12 0.0 0.0 0.0 2.4832025316593924 0.0 13 0.0 0.0 0.0 2.5979156179055063 0.0 14 0.0 0.0 0.0 2.6546442693142223 0.0 15 0.0 0.0 0.0 2.7127925019901435 0.0 16 0.0 0.0 0.0 2.8203257829809676 0.0 17 0.0 0.0 0.0 2.946586616843004 0.0 18 0.0 0.0 0.0 3.115871682957272 0.0 19 0.0 0.0 0.0 3.2092091512760397 0.0 20 0.0 0.0 0.0 3.304785190054632 0.0 21 0.0 0.0 0.0 3.429599143009709 0.0 22 0.0 0.0 0.0 3.5724581578421493 0.0 23 0.0 0.0 0.0 3.7313693608499143 0.0 24 0.0 0.0 0.0 3.856783905879578 0.0 25 0.0 0.0 0.0 3.9676477429203842 0.0 26 0.0 0.0 0.0 4.073297348768186 0.0 27 0.0 0.0 0.0 4.181840716429906 0.0 28 0.0 0.0 0.0 4.29786418538421 0.0 29 0.0 0.0 0.0 4.42573569799173 0.0 30 0.0 0.0 0.0 4.595785154019108 0.0 31 0.0 0.0 0.0 4.74183822670276 0.0 32 0.0 0.0 0.0 4.881885378640543 0.0 33 0.0 0.0 0.0 5.022205526975866 0.0 34 0.0 0.0 0.0 5.16874999317509 0.0 35 5.459927950790761E-5 0.0 0.0 5.3352231963947006 0.0 36 5.459927950790761E-5 0.0 0.0 5.489575359563555 0.0 37 5.459927950790761E-5 0.0 0.0 5.651544122223763 0.0 38 5.459927950790761E-5 0.0 0.0 5.8228220620400695 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10290 0.0 41.30612 1 TACGGGA 1880 0.0 39.436172 4 AGGGCGA 3430 0.0 37.906704 6 GGGCGAT 6785 0.0 37.25571 7 AAGGGAT 9270 0.0 37.18878 5 ACGGGAT 2805 0.0 37.17647 5 TTAATCG 1180 0.0 37.101696 20 TAGGGAT 9460 0.0 37.09302 5 TAATCGT 1185 0.0 36.94515 21 GGCGATT 2140 0.0 36.906544 8 CGAGGGA 2630 0.0 36.889736 4 TAGGGAC 4225 0.0 36.8142 5 AGGGATT 10810 0.0 36.754856 6 TAAGGGA 6550 0.0 36.71145 4 ACGTAAG 120 0.0 36.666664 1 ATAGGGA 6790 0.0 36.645065 4 TTAGGGA 5895 0.0 36.610683 4 CGGGATA 1275 0.0 36.58039 6 CGTTGAT 1215 0.0 36.57613 25 AGGGATC 6675 0.0 36.55131 6 >>END_MODULE