##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546637_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1654904 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.030636822438037 31.0 31.0 33.0 30.0 34.0 2 31.406903361161735 31.0 31.0 34.0 30.0 34.0 3 31.57010497285643 31.0 31.0 34.0 30.0 34.0 4 35.35851868144618 37.0 35.0 37.0 33.0 37.0 5 35.18674315851554 37.0 35.0 37.0 32.0 37.0 6 35.244901214813666 37.0 35.0 37.0 32.0 37.0 7 35.68478473675815 37.0 35.0 37.0 35.0 37.0 8 35.71178932433543 37.0 35.0 37.0 35.0 37.0 9 37.48930632834291 39.0 37.0 39.0 35.0 39.0 10 36.769410793617034 39.0 37.0 39.0 32.0 39.0 11 36.42922852322552 38.0 35.0 39.0 32.0 39.0 12 35.99842830762389 37.0 35.0 39.0 31.0 39.0 13 35.904247617988716 38.0 35.0 39.0 31.0 39.0 14 36.868371216698975 39.0 35.0 41.0 31.0 41.0 15 36.99417186737116 39.0 35.0 41.0 31.0 41.0 16 37.01901560453054 39.0 35.0 41.0 31.0 41.0 17 36.89623869420824 38.0 35.0 40.0 31.0 41.0 18 36.83868671536234 38.0 35.0 40.0 31.0 41.0 19 36.80947051913585 38.0 35.0 40.0 31.0 41.0 20 36.68358950126412 38.0 35.0 40.0 31.0 41.0 21 36.586465438478605 38.0 35.0 40.0 31.0 41.0 22 36.50797629348893 38.0 35.0 40.0 30.0 41.0 23 36.2805461827393 38.0 35.0 40.0 30.0 41.0 24 36.21681378496879 38.0 35.0 40.0 30.0 41.0 25 36.073852018002256 38.0 34.0 40.0 30.0 41.0 26 35.97029978778225 38.0 34.0 40.0 30.0 41.0 27 35.81497174458458 38.0 34.0 40.0 29.0 41.0 28 35.76336089585861 38.0 34.0 40.0 29.0 41.0 29 35.63690038817962 38.0 34.0 40.0 29.0 41.0 30 35.62007343024127 38.0 34.0 40.0 29.0 41.0 31 35.55998353983071 38.0 34.0 40.0 29.0 41.0 32 35.38953981620686 38.0 34.0 40.0 27.0 41.0 33 35.2065588094536 38.0 34.0 40.0 27.0 41.0 34 35.10335644847073 38.0 34.0 40.0 26.0 41.0 35 34.879415361857845 38.0 33.0 40.0 25.0 41.0 36 34.69744166428989 37.0 33.0 40.0 24.0 41.0 37 34.77742938563204 37.0 33.0 40.0 25.0 41.0 38 34.721705911642005 37.0 33.0 40.0 24.0 41.0 39 34.64042566819586 37.0 33.0 40.0 24.0 41.0 40 34.642065038213694 37.0 33.0 40.0 24.0 41.0 41 34.65442285473961 37.0 33.0 40.0 24.0 41.0 42 34.407206702020176 37.0 33.0 40.0 23.0 41.0 43 34.46346495023276 37.0 33.0 40.0 24.0 41.0 44 34.26684569014275 37.0 33.0 40.0 23.0 41.0 45 34.07508048805248 36.0 33.0 40.0 23.0 41.0 46 34.126412166506334 36.0 33.0 40.0 23.0 41.0 47 33.97930997810145 36.0 33.0 40.0 23.0 41.0 48 34.03379410527741 36.0 33.0 40.0 23.0 41.0 49 33.94298581669994 36.0 33.0 40.0 23.0 41.0 50 33.46472544630988 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 3.0 14 13.0 15 42.0 16 127.0 17 317.0 18 819.0 19 1589.0 20 2969.0 21 4727.0 22 6902.0 23 10215.0 24 14491.0 25 20344.0 26 26799.0 27 32685.0 28 37319.0 29 42956.0 30 50999.0 31 61403.0 32 75260.0 33 93990.0 34 136987.0 35 171226.0 36 143544.0 37 174086.0 38 234496.0 39 310590.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.957616876870205 23.95274892078332 27.72221228542562 13.36742191692086 2 32.50756539352132 25.26448664091693 28.563711248507467 13.664236717054282 3 29.392158094971066 25.466552742636434 31.44617452130154 13.695114641090964 4 25.415431952548307 29.0386632698936 30.71120741746953 14.834697360088562 5 23.82198604873757 32.69404146705791 29.18574128771216 14.298231196492365 6 21.729477963676445 41.578846869667366 26.577251610969576 10.114423555686614 7 89.13737594446566 3.491139063051391 6.1120161652881375 1.25946882719481 8 89.3150901804576 3.0294204376809772 6.141564707076664 1.5139246747847608 9 83.70219662288568 5.50708681591198 7.907649023750018 2.8830675374523236 10 39.12148378395363 33.86383741896811 14.866662960510096 12.148015836568163 11 31.043009141315753 26.610304887775964 26.61090915243422 15.735776818474061 12 29.30907170446141 24.460693792510018 29.570718301484554 16.659516201544015 13 22.605601291676134 31.749152820949128 29.111718867076274 16.533527020298457 14 20.343476117043647 32.035392989563135 29.624618709000643 17.996512184392568 15 19.447472481787464 25.568733896346856 37.24820291690636 17.73559070495932 16 21.651165263966973 23.738234967103832 35.9380362848842 18.672563484044996 17 21.279663352073594 24.02804029720153 30.098664333399398 24.593632017325476 18 22.882717063950537 24.0200640037126 33.23932989466458 19.857889037672276 19 26.2989877358445 26.125140793665373 27.74378453372522 19.832086936764913 20 28.58655245258939 25.19251872011911 28.23438700976008 17.98654181753141 21 25.214332674282012 27.832309306159146 28.727043985633006 18.226314033925835 22 24.76838535649198 25.173303103986694 27.551567945935236 22.506743593586094 23 22.044360277091602 28.665408990491294 28.22206001073174 21.068170721685366 24 20.947378216500777 25.767234836582663 35.091521925138856 18.193865021777697 25 20.593581259094183 27.28430168759034 32.05472945862721 20.06738759468827 26 20.301842282090078 30.29003495066783 28.655136491301008 20.752986275941083 27 20.116030899677565 30.05805774836486 29.127490174656657 20.69842117730092 28 18.881397349936915 29.09769992700483 32.80516573771047 19.21573698534779 29 19.696127388658194 25.82530467024069 32.458680382668724 22.01988755843239 30 20.95311873075417 29.142052952920533 30.945964237200467 18.958864079124833 31 24.349267389528332 28.387568100626986 28.051415671241354 19.211748838603327 32 24.976735810657296 27.10622489280345 28.43028961196541 19.486749684573848 33 24.587528944277132 28.40956333418736 27.26762398302258 19.73528373851293 34 21.143703803966876 28.30430043071985 28.832065183237216 21.71993058207606 35 21.493814746958133 28.205865717890582 30.175889356724017 20.124430178427268 36 25.206295954327263 29.167311215635465 26.326421351329138 19.29997147870813 37 21.444446324378937 31.800696596298035 27.797080676583054 18.957776402739977 38 21.30721782048989 30.62612695358764 28.266110904318314 19.800544321604153 39 21.23609587021362 31.536572514176047 27.27898415859772 19.948347457012613 40 24.376217593286377 27.723239535344646 27.584077384549193 20.31646548681978 41 19.976808322416282 27.626436337092663 28.37892711601398 24.01782822447707 42 21.25361954530293 27.87829384665213 27.24037164693541 23.62771496110953 43 21.42813117860613 27.029604134137088 28.329558693434787 23.212705993822 44 20.470250842344935 28.794479921493938 29.04089904912913 21.694370187031996 45 20.136455045126482 31.624372169020077 26.602268167821215 21.636904618032222 46 21.726396213919358 30.433789512866007 27.606133044575394 20.233681228639245 47 20.429644257310393 29.40007396199417 28.682026268593226 21.488255512102214 48 21.34746184672948 27.46993179060538 30.420435263918634 20.762171098746514 49 21.10001546917525 28.135952296930817 29.97321899034627 20.790813243547664 50 20.58101255420254 30.471072642280156 28.906450162668047 20.041464640849256 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1398.0 1 1986.5 2 2575.0 3 8666.5 4 14758.0 5 11045.0 6 7332.0 7 7597.5 8 7863.0 9 8141.5 10 8420.0 11 8688.5 12 8957.0 13 8792.5 14 8628.0 15 8542.0 16 8456.0 17 8324.5 18 8193.0 19 8155.0 20 8117.0 21 8957.0 22 9797.0 23 11274.5 24 12752.0 25 14355.5 26 15959.0 27 19841.5 28 23724.0 29 28988.5 30 34253.0 31 38749.0 32 43245.0 33 50135.0 34 57025.0 35 62061.0 36 67097.0 37 72882.0 38 78667.0 39 84637.0 40 90607.0 41 103160.0 42 115713.0 43 121010.5 44 126308.0 45 127910.5 46 129513.0 47 124737.0 48 119961.0 49 117221.0 50 114481.0 51 106992.5 52 99504.0 53 90441.5 54 81379.0 55 74007.5 56 66636.0 57 64347.5 58 62059.0 59 58328.0 60 54597.0 61 51385.5 62 48174.0 63 42511.0 64 36848.0 65 31666.5 66 26485.0 67 22175.0 68 17865.0 69 15290.0 70 12715.0 71 11030.5 72 9346.0 73 7960.0 74 6574.0 75 5305.0 76 4036.0 77 3361.0 78 2686.0 79 1967.0 80 1248.0 81 866.0 82 484.0 83 385.5 84 287.0 85 204.0 86 121.0 87 78.0 88 35.0 89 21.0 90 7.0 91 11.0 92 15.0 93 8.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1654904.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.688187322882726 #Duplication Level Percentage of deduplicated Percentage of total 1 76.29208645136475 17.309291486621266 2 5.818459479960368 2.640205972238873 3 2.478976633195527 1.6873045866896776 4 1.5746451801416677 1.429033792565143 5 1.2095048859845998 1.3720736710580255 6 0.9192076753796032 1.251309355658641 7 0.7571011344270382 1.202407665217336 8 0.6875102024391403 1.2478688207465793 9 0.6062655238624572 1.2379559195517353 >10 8.059497357992255 42.37360076945129 >50 1.376923360962486 21.258690995357394 >100 0.21820577523515686 6.258471130814325 >500 0.0010775593700494157 0.19411607858331667 >1k 2.693898425123539E-4 0.08238931798813315 >5k 2.693898425123539E-4 0.4552804374581631 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7449 0.4501167439319743 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027735747813770466 0.0 2 0.0 0.0 0.0 0.08864562536558011 0.0 3 0.0 0.0 0.0 0.12683515176711158 0.0 4 0.0 0.0 0.0 0.1807355592831971 0.0 5 0.0 0.0 0.0 0.27856600745420884 0.0 6 0.0 0.0 0.0 0.46546506625157713 0.0 7 0.0 0.0 0.0 0.5580384118957957 0.0 8 0.0 0.0 0.0 0.7990795840725504 0.0 9 0.0 0.0 0.0 0.9215036038344219 0.0 10 0.0 0.0 0.0 1.1119678241154773 0.0 11 0.0 0.0 0.0 1.2932472215911013 0.0 12 0.0 0.0 0.0 1.4508394444632438 0.0 13 0.0 0.0 0.0 1.5433523636416373 0.0 14 0.0 0.0 0.0 1.5911496981093767 0.0 15 0.0 0.0 0.0 1.6373759444656608 0.0 16 0.0 0.0 0.0 1.7217312907576512 0.0 17 0.0 0.0 0.0 1.8151506069234227 0.0 18 0.0 0.0 0.0 1.9420461851563595 0.0 19 0.0 0.0 0.0 2.0032581950372954 0.0 20 0.0 0.0 0.0 2.071177542624829 0.0 21 0.0 0.0 0.0 2.152813697954685 0.0 22 0.0 0.0 0.0 2.2445410730773507 0.0 23 0.0 0.0 0.0 2.3546380938108795 0.0 24 0.0 0.0 0.0 2.441350072270053 0.0 25 0.0 0.0 0.0 2.518333389731368 0.0 26 0.0 0.0 0.0 2.592114104503947 0.0 27 0.0 0.0 0.0 2.6729647157780754 0.0 28 0.0 0.0 0.0 2.7479539598671585 0.0 29 0.0 0.0 0.0 2.8383519527416694 0.0 30 0.0 0.0 0.0 2.9580567815414067 0.0 31 0.0 0.0 0.0 3.0529867593528084 0.0 32 0.0 0.0 0.0 3.1660446769117727 0.0 33 0.0 0.0 0.0 3.265264933796764 0.0 34 0.0 0.0 0.0 3.3679899256996175 0.0 35 0.0 0.0 0.0 3.4841295930156675 0.0 36 0.0 0.0 0.0 3.5902988934705578 0.0 37 0.0 0.0 0.0 3.705955149060006 0.0 38 0.0 0.0 0.0 3.821550978183629 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGATA 20 7.8574877E-4 44.0 24 TCGAACG 30 2.5283953E-6 44.0 1 CGTTTTT 6065 0.0 40.95301 1 CGCATCG 50 1.3478711E-9 39.6 21 CGTTAGG 170 0.0 38.823532 2 CGTAAGG 360 0.0 38.5 2 TAACGGG 415 0.0 38.168674 3 ACGGGAC 365 0.0 37.9726 5 TACGGGA 435 0.0 37.931034 4 AGGGATT 2870 0.0 37.790943 6 TCGTAGC 35 7.2921484E-6 37.714287 30 GGCGATA 955 0.0 37.089005 8 AGGGCGA 2210 0.0 37.031677 6 TAGGGAC 1450 0.0 36.868965 5 GCGTGTA 30 1.3013431E-4 36.666664 29 TTAGCGG 410 0.0 36.487804 2 CCCTACA 1645 0.0 36.3769 27 GGACTAA 1860 0.0 36.311825 8 TATGACG 85 0.0 36.235294 1 CGGTCTA 85 0.0 36.235294 31 >>END_MODULE