##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546635_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2737084 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.96165298543998 31.0 31.0 33.0 30.0 34.0 2 31.33273074556718 31.0 31.0 34.0 30.0 34.0 3 31.504709391454554 31.0 31.0 34.0 30.0 34.0 4 35.270570066537964 37.0 35.0 37.0 33.0 37.0 5 35.06659934441179 37.0 35.0 37.0 32.0 37.0 6 35.145644781088194 37.0 35.0 37.0 32.0 37.0 7 35.674203641539684 37.0 35.0 37.0 35.0 37.0 8 35.71873753235195 37.0 35.0 37.0 35.0 37.0 9 37.49658614788585 39.0 37.0 39.0 35.0 39.0 10 36.73863754272796 39.0 37.0 39.0 32.0 39.0 11 36.3238468384602 38.0 35.0 39.0 32.0 39.0 12 35.82801514312312 37.0 35.0 39.0 31.0 39.0 13 35.66895864357835 37.0 35.0 39.0 30.0 39.0 14 36.60843803113094 38.0 35.0 40.0 31.0 41.0 15 36.82575982322793 38.0 35.0 40.0 31.0 41.0 16 36.88775645906373 38.0 35.0 40.0 31.0 41.0 17 36.78929546919276 38.0 35.0 40.0 31.0 41.0 18 36.72144735053802 38.0 35.0 40.0 31.0 41.0 19 36.70609889941266 38.0 35.0 40.0 31.0 41.0 20 36.577754646916205 38.0 35.0 40.0 31.0 41.0 21 36.46556992770408 38.0 35.0 40.0 30.0 41.0 22 36.39661844503128 38.0 35.0 40.0 30.0 41.0 23 36.19453038342996 38.0 34.0 40.0 30.0 41.0 24 36.17018147780631 38.0 34.0 40.0 30.0 41.0 25 36.03379107108149 38.0 34.0 40.0 30.0 41.0 26 35.91175353039951 38.0 34.0 40.0 30.0 41.0 27 35.75062219500753 38.0 34.0 40.0 29.0 41.0 28 35.718151141872156 38.0 34.0 40.0 29.0 41.0 29 35.64419104419156 38.0 34.0 40.0 29.0 41.0 30 35.60904305457925 38.0 34.0 40.0 29.0 41.0 31 35.54946176295649 38.0 34.0 40.0 29.0 41.0 32 35.36720246802802 38.0 34.0 40.0 27.0 41.0 33 35.19275586719297 38.0 34.0 40.0 27.0 41.0 34 35.12969715215171 38.0 34.0 40.0 26.0 41.0 35 34.92679727768677 37.0 34.0 40.0 25.0 41.0 36 34.72644281286215 37.0 33.0 40.0 24.0 41.0 37 34.80493072189235 37.0 33.0 40.0 25.0 41.0 38 34.78806386650903 37.0 33.0 40.0 25.0 41.0 39 34.68543128380422 37.0 33.0 40.0 24.0 41.0 40 34.65801049584156 37.0 33.0 40.0 24.0 41.0 41 34.676018711884616 37.0 33.0 40.0 24.0 41.0 42 34.43509479431395 37.0 33.0 40.0 23.0 41.0 43 34.504047738396046 37.0 33.0 40.0 24.0 41.0 44 34.329162714772366 37.0 33.0 40.0 23.0 41.0 45 34.162878815556994 37.0 33.0 40.0 23.0 41.0 46 34.2383825268059 37.0 33.0 40.0 23.0 41.0 47 34.099708668056955 37.0 33.0 40.0 23.0 41.0 48 34.16151897420759 36.0 33.0 40.0 23.0 41.0 49 34.06863435685569 36.0 33.0 40.0 23.0 41.0 50 33.57335763169855 36.0 32.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 5.0 14 27.0 15 80.0 16 221.0 17 647.0 18 1550.0 19 2947.0 20 5140.0 21 8028.0 22 12023.0 23 17452.0 24 24701.0 25 33784.0 26 44202.0 27 53370.0 28 61679.0 29 71827.0 30 86274.0 31 104452.0 32 126092.0 33 156373.0 34 227655.0 35 295385.0 36 223787.0 37 274023.0 38 377531.0 39 527824.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.17377179509288 24.803257773601395 29.278275712400497 12.744694718905228 2 28.699046138152866 27.137493770742875 31.12750649961784 13.035953591486413 3 28.16935833902065 26.106140695718512 32.2624734936889 13.462027471571936 4 24.041461643120925 29.52233106473897 31.928906822004734 14.50730047013537 5 22.037358005819332 34.33223094358814 30.233379757435287 13.397031293157244 6 20.813573861817904 43.20338725446497 25.873484335884466 10.109554547832657 7 90.65647966960458 3.281484967213282 5.0607873196438256 1.0012480435383058 8 91.01594982105044 2.6132921021057447 4.762513682444529 1.6082443943992952 9 85.19986964229085 5.974021988364259 6.587156258266097 2.238952111078798 10 40.425942353248935 37.76829647902659 11.582107089150352 10.223654078574132 11 30.10196252654285 25.398818596725565 29.82392940808539 14.675289468646193 12 30.46936082341645 23.74282265359777 29.333663124697672 16.454153398288103 13 21.633351406094953 32.938557968991816 29.312253478519473 16.11583714639375 14 17.564057222942374 34.9022536392745 29.916655827881062 17.617033309902073 15 16.263841372789436 26.380337614775435 40.33106035474249 17.02476065769264 16 19.18041243893136 23.796164092881327 39.19054000534876 17.832883462838552 17 19.229186974166666 23.552218346240014 30.844394983858734 26.374199695734585 18 20.35173198922649 25.39231532536086 34.42199800956054 19.833954675852112 19 24.821488854562006 26.00632644083996 29.318610608954636 19.853574095643392 20 26.381506742211787 26.06686532090356 28.9713797603581 18.580248176526553 21 22.846174980380578 28.990158869804507 29.850015564009 18.313650585805917 22 22.68282595638278 26.224514848649143 28.256166051169785 22.83649314379829 23 19.308870316000533 30.011135938831252 28.695027262590404 21.984966482577807 24 18.94607545840756 26.140483814161346 36.57235218210329 18.341088545327803 25 18.470130986115148 27.908058356995983 33.80784075315189 19.813969903736968 26 18.38577113453588 32.06237002591079 29.5916749358076 19.960183903745737 27 18.292094798698177 32.83490751471273 29.640997499528694 19.23200018706039 28 17.062136200423517 30.439000045303686 34.5961614623446 17.9027022919282 29 17.538628701201716 26.356772389886462 34.25700490010537 21.847594008806453 30 19.11106856786273 30.238056267180692 31.541523753015984 19.109351411940594 31 24.174376818541194 28.321892934232196 28.75965808868124 18.74407215854537 32 24.6521480524529 27.32963255786085 29.803542748414007 18.214676641272245 33 24.325924962478314 27.97447940947373 28.07436673481705 19.625228893230897 34 20.300728804815634 28.24549776331307 29.519079429056617 21.934694002814677 35 20.07212785577644 27.202745695784277 31.60125885796709 21.123867590472194 36 25.184868275873157 26.50327867175432 28.764188457497102 19.54766459487542 37 19.471671311512544 31.348910007876995 30.687256949366553 18.492161731243907 38 20.39824134005387 30.499210108275815 28.652134899769244 20.450413651901076 39 20.475074933761626 31.03675298237102 29.004699892294134 19.483472191573224 40 23.080329284742447 27.273258694289247 28.680741986727483 20.96567003424082 41 19.043551458413408 26.745543797705878 30.44100948308492 23.769895260795796 42 20.505654923268704 27.07600497463724 28.760900286582363 23.65743981551169 43 20.418518394028098 26.779448493360086 29.96579571544023 22.836237397171587 44 19.244641377465946 29.088840532479093 30.727774522082623 20.938743567972338 45 18.528806569327063 32.395352133876784 28.176848061659783 20.89899323513637 46 20.695966948767374 30.937888643534507 28.698680785829005 19.667463621869114 47 19.93607065037098 28.422730175617556 29.835511076751754 21.80568809725971 48 20.5711625949368 27.128213821716834 31.83022515933015 20.470398424016214 49 20.747189344572543 26.221592030058265 32.42487260164467 20.606346023724516 50 19.986050848275024 30.15227154153837 30.00711706326879 19.854560546917817 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1906.0 1 2898.5 2 3891.0 3 10548.0 4 17205.0 5 13479.0 6 9753.0 7 10533.5 8 11314.0 9 12178.0 10 13042.0 11 13407.0 12 13772.0 13 13806.5 14 13841.0 15 13963.5 16 14086.0 17 13893.5 18 13701.0 19 14054.0 20 14407.0 21 15776.5 22 17146.0 23 19603.5 24 22061.0 25 25612.5 26 29164.0 27 38047.5 28 46931.0 29 55462.5 30 63994.0 31 75182.5 32 86371.0 33 95851.5 34 105332.0 35 113374.5 36 121417.0 37 128530.0 38 135643.0 39 154255.5 40 172868.0 41 194099.0 42 215330.0 43 228837.0 44 242344.0 45 247679.0 46 253014.0 47 243564.0 48 234114.0 49 215146.5 50 196179.0 51 175052.0 52 153925.0 53 136127.0 54 118329.0 55 104183.5 56 90038.0 57 83671.5 58 77305.0 59 71137.0 60 64969.0 61 60112.5 62 55256.0 63 46934.5 64 38613.0 65 32017.0 66 25421.0 67 20976.0 68 16531.0 69 13786.5 70 11042.0 71 8967.0 72 6892.0 73 5763.0 74 4634.0 75 3669.5 76 2705.0 77 2071.0 78 1437.0 79 1051.0 80 665.0 81 471.5 82 278.0 83 193.0 84 108.0 85 87.5 86 67.0 87 47.0 88 27.0 89 17.5 90 8.0 91 7.0 92 6.0 93 4.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2737084.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.642776619538047 #Duplication Level Percentage of deduplicated Percentage of total 1 80.3033599766717 15.773809618201144 2 6.825561382448478 2.6814595507676153 3 2.273793272857412 1.3399084001323944 4 1.1888857545937344 0.9341206921454261 5 0.7842861310727829 0.7702778639232206 6 0.5952077373643972 0.7014919576361716 7 0.45732259477471976 0.6288159900559137 8 0.37843894035399395 0.5946873255606548 9 0.3186106632603777 0.5632558278323812 >10 4.29085452371111 20.291652576510298 >50 1.5220021550376612 21.47887193716201 >100 1.0564005256845481 33.17557913607153 >500 0.004711019793888772 0.5799510792976099 >1k 3.7688158351110177E-4 0.17411857780290765 >5k 1.8844079175555088E-4 0.3119994669006608 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8429 0.3079554737815865 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3394 0.12400057871808098 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03182218740820523 0.0 2 0.0 0.0 0.0 0.10956916192561135 0.0 3 0.0 0.0 0.0 0.16305674213871404 0.0 4 0.0 0.0 0.0 0.28727653225111105 0.0 5 0.0 0.0 0.0 0.4572384333107789 0.0 6 0.0 0.0 0.0 0.7644997376770315 0.0 7 0.0 0.0 0.0 0.9149518246425759 0.0 8 0.0 0.0 0.0 1.3711307362141607 0.0 9 0.0 0.0 0.0 1.5916573988960514 0.0 10 0.0 0.0 0.0 1.9491911830254387 0.0 11 0.0 0.0 0.0 2.2393905338674296 0.0 12 0.0 0.0 0.0 2.474750500898036 0.0 13 0.0 0.0 0.0 2.605327421445597 0.0 14 0.0 0.0 0.0 2.6673642460370233 0.0 15 0.0 0.0 0.0 2.7284876898187997 0.0 16 0.0 0.0 0.0 2.8407239237085893 0.0 17 0.0 0.0 0.0 2.96709929253176 0.0 18 0.0 0.0 0.0 3.1517483570105997 0.0 19 0.0 0.0 0.0 3.2451324109892132 0.0 20 0.0 0.0 0.0 3.3454581591211667 0.0 21 0.0 0.0 0.0 3.459740366024572 0.0 22 0.0 0.0 0.0 3.5861888053125153 0.0 23 0.0 0.0 0.0 3.7348141306587594 0.0 24 0.0 0.0 0.0 3.849425154653639 0.0 25 3.653523238599912E-5 0.0 0.0 3.9491663390674163 0.0 26 3.653523238599912E-5 0.0 0.0 4.043244562461364 0.0 27 3.653523238599912E-5 0.0 0.0 4.142291577459807 0.0 28 3.653523238599912E-5 0.0 0.0 4.242836536986077 0.0 29 3.653523238599912E-5 0.0 0.0 4.352771051235549 0.0 30 3.653523238599912E-5 0.0 0.0 4.503113532503935 0.0 31 3.653523238599912E-5 0.0 0.0 4.632229043756055 0.0 32 3.653523238599912E-5 0.0 0.0 4.756120016776979 0.0 33 3.653523238599912E-5 0.0 0.0 4.876759354115547 0.0 34 3.653523238599912E-5 0.0 0.0 5.005034555022791 0.0 35 7.307046477199823E-5 0.0 0.0 5.158701742438303 0.0 36 7.307046477199823E-5 0.0 0.0 5.299545063286329 0.0 37 7.307046477199823E-5 0.0 0.0 5.4439688369081844 0.0 38 7.307046477199823E-5 0.0 0.0 5.590511654008426 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGCG 30 2.5290046E-6 44.0 1 TAACGCG 25 4.4444565E-5 44.0 1 GTAATCG 25 4.4444565E-5 44.0 2 CGTAATC 20 7.85839E-4 44.0 24 TCGCGAA 20 7.85839E-4 44.0 16 TACGGGA 995 0.0 41.12563 4 CGTTAGG 475 0.0 40.757896 2 CGTTTTT 7760 0.0 40.314434 1 TCATCGA 355 0.0 39.661972 16 ACGCGAA 45 2.3530447E-8 39.11111 14 GCGATCG 90 0.0 39.11111 9 CGTACAC 45 2.3530447E-8 39.11111 15 TAATGCG 90 0.0 39.11111 1 TATTGCG 250 0.0 38.72 1 ACGGGTA 165 0.0 38.666668 5 AGGGCGA 2975 0.0 38.30588 6 TAGGGAT 6135 0.0 37.72453 5 GTGCGAC 35 7.2938965E-6 37.714287 9 TACGGGT 105 0.0 37.714283 4 ATACCGG 105 0.0 37.714283 2 >>END_MODULE