##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546633_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2308644 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.902467855589688 31.0 31.0 33.0 30.0 34.0 2 31.258940313014914 31.0 31.0 34.0 30.0 34.0 3 31.429805981346625 31.0 31.0 34.0 30.0 34.0 4 35.20816332011345 37.0 35.0 37.0 33.0 37.0 5 35.00210773077183 35.0 35.0 37.0 32.0 37.0 6 35.07374891927902 37.0 35.0 37.0 32.0 37.0 7 35.62833334199643 37.0 35.0 37.0 35.0 37.0 8 35.66474432610658 37.0 35.0 37.0 35.0 37.0 9 37.40906610113989 39.0 37.0 39.0 35.0 39.0 10 36.62035766449916 39.0 35.0 39.0 32.0 39.0 11 36.2338346665835 38.0 35.0 39.0 31.0 39.0 12 35.733462586695914 37.0 35.0 39.0 30.0 39.0 13 35.57738048828663 37.0 35.0 39.0 30.0 39.0 14 36.4822761759717 38.0 35.0 40.0 30.0 41.0 15 36.66996643917382 38.0 35.0 40.0 31.0 41.0 16 36.73004412980087 38.0 35.0 40.0 31.0 41.0 17 36.632672685784385 38.0 35.0 40.0 31.0 41.0 18 36.56068887190922 38.0 35.0 40.0 31.0 41.0 19 36.561954116788904 38.0 35.0 40.0 31.0 41.0 20 36.43484400366622 38.0 35.0 40.0 30.0 41.0 21 36.31551984628206 38.0 34.0 40.0 30.0 41.0 22 36.24532842655689 38.0 34.0 40.0 30.0 41.0 23 36.03721621869808 38.0 34.0 40.0 30.0 41.0 24 35.99822839727563 38.0 34.0 40.0 30.0 41.0 25 35.821012681037004 38.0 34.0 40.0 29.0 41.0 26 35.714779758161065 38.0 34.0 40.0 29.0 41.0 27 35.50696599389079 37.0 34.0 40.0 28.0 41.0 28 35.46174984103222 37.0 34.0 40.0 28.0 41.0 29 35.32755808171377 37.0 34.0 40.0 27.0 41.0 30 35.329180679221224 37.0 34.0 40.0 27.0 41.0 31 35.29118218313434 37.0 34.0 40.0 27.0 41.0 32 35.1229968760883 37.0 34.0 40.0 27.0 41.0 33 34.96284095772237 37.0 33.0 40.0 26.0 41.0 34 34.864893417954434 37.0 34.0 40.0 25.0 41.0 35 34.719236486872816 37.0 33.0 40.0 25.0 41.0 36 34.52868567002968 37.0 33.0 40.0 24.0 41.0 37 34.62710578157568 37.0 33.0 40.0 24.0 41.0 38 34.57557250056743 37.0 33.0 40.0 24.0 41.0 39 34.48224845407088 37.0 33.0 40.0 24.0 41.0 40 34.45659183486064 37.0 33.0 40.0 24.0 41.0 41 34.46369297301793 37.0 33.0 40.0 24.0 41.0 42 34.20231529850423 37.0 33.0 40.0 23.0 41.0 43 34.256692240120174 37.0 33.0 40.0 23.0 41.0 44 34.060870796883364 36.0 33.0 40.0 23.0 41.0 45 33.878266636172576 36.0 33.0 40.0 23.0 41.0 46 33.94691082730815 36.0 33.0 40.0 23.0 41.0 47 33.79198915034107 36.0 32.0 40.0 23.0 41.0 48 33.844933216208304 36.0 33.0 40.0 23.0 41.0 49 33.76113510788151 36.0 32.0 40.0 23.0 41.0 50 33.25710070500259 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 2.0 13 6.0 14 17.0 15 68.0 16 207.0 17 597.0 18 1355.0 19 2660.0 20 4610.0 21 7421.0 22 10851.0 23 16096.0 24 22457.0 25 30069.0 26 39385.0 27 47857.0 28 55320.0 29 65300.0 30 77424.0 31 92972.0 32 112242.0 33 138187.0 34 195876.0 35 244014.0 36 195048.0 37 234475.0 38 308467.0 39 405658.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.564142414334995 23.668439135700435 28.640102155204527 13.12731629476004 2 30.28574349271694 26.00604510699787 30.199978862050624 13.508232538234566 3 28.9707724534402 26.344512189839577 31.086559902696127 13.598155454024093 4 24.645246300425704 29.479209440693328 30.615980636252278 15.259563622628693 5 22.296811461619896 33.24804517283739 29.649525868865013 14.805617496677703 6 21.530257588437195 41.43124708703464 26.69194557497821 10.346549749549952 7 88.88100547334278 3.6896550529228413 5.9108290407702535 1.5185104329641124 8 88.92384447320592 3.09701279192461 5.569416505966273 2.4097262289032004 9 82.88228934387459 6.003524146641925 8.116366143935574 2.997820365547915 10 40.356936799263984 33.968511385904456 13.890491561280127 11.784060253551436 11 32.04859649213997 25.65293739528485 27.455467365258567 14.842998747316608 12 30.803839829787528 23.479930210114684 28.916801377778473 16.79942858231932 13 22.669757658608255 31.236864583712343 29.42952659656491 16.66385116111449 14 18.868521954879142 33.505382380306365 29.666202324827907 17.95989333998659 15 17.38401416589132 26.548701315577457 39.00467114028841 17.062613378242812 16 19.761816893379837 23.72254015777227 37.967135686576185 18.548507262271706 17 20.375337210934212 24.301754623060116 30.152938261594254 25.16996990441142 18 21.529261332626426 24.925540707012427 32.95341334566958 20.59178461469157 19 25.91703181607905 26.885955565258218 27.50233470383481 19.694677914827924 20 27.52109030235931 26.362141586143206 27.36978936553232 18.746978745965166 21 23.445840935198326 29.455342616704872 28.95808102072039 18.140735427376416 22 23.053792615925193 25.596757230651413 27.98694818256951 23.362501970853884 23 20.574545057618238 29.730265905007442 27.942506510315145 21.752682527059175 24 20.54985523969915 25.888053766626644 34.74840642385747 18.81368456981674 25 19.60267585647679 26.947420217235745 32.56119176451631 20.888712161771153 26 19.456789353403988 31.130048634609754 28.676920304732995 20.73624170725326 27 19.248398627072863 31.26623247239505 28.737215439019614 20.748153461512473 28 18.07069431233226 29.584509348344746 32.90143478162939 19.443361557693606 29 18.767337016880905 26.02761621107455 33.12537576170254 22.079671010342004 30 20.006895822829332 28.969689566689365 30.960858408658936 20.062556201822368 31 24.045630248752083 27.75165854934758 28.220288619639927 19.98242258226041 32 25.41730123830266 26.564078307439342 28.129542709919765 19.889077744338234 33 24.600717997231275 27.395172230971948 28.079383395620976 19.9247263761758 34 19.88266705477328 27.159666020399854 29.62973069905971 23.32793622576716 35 19.90155259970788 27.008581660923035 31.063472757168277 22.026392982200807 36 24.5797966252051 27.055232422149107 28.245498223199416 20.11947272944638 37 20.248509514676147 30.5854865453487 28.51604664902861 20.649957290946546 38 19.974929005944613 30.62148170094653 28.639149214863792 20.764440078245062 39 20.28537097967465 30.2656451146214 28.15691808698093 21.292065818723025 40 23.593286795192327 26.86555397887245 28.475633315487357 21.065525910447867 41 19.144961284632885 26.3044453800586 28.80340147723079 25.747191858077727 42 20.652686165558656 26.620128525662683 27.84773226188187 24.879453046896792 43 20.636269602415965 25.89247194457006 29.60880932703353 23.862449125980444 44 20.17114808519633 27.975859422240934 29.987343219656214 21.86564927290652 45 19.462680257328543 30.670038342854074 27.470021363189822 22.39726003662756 46 20.831189217566674 30.221506650657272 27.979584552663816 20.96771957911224 47 19.99953219292364 27.94588511697776 28.93798264262485 23.116600047473757 48 20.62704340729883 26.284910103073493 31.69371284615558 21.3943336434721 49 20.761407995342722 26.280361978719974 31.561817239903593 21.396412786033707 50 19.722356500179323 29.839594151371973 29.317296213708133 21.120753134740568 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2077.0 1 2682.5 2 3288.0 3 9203.5 4 15119.0 5 11592.0 6 8065.0 7 8588.5 8 9112.0 9 9694.5 10 10277.0 11 10655.0 12 11033.0 13 10997.0 14 10961.0 15 11123.0 16 11285.0 17 11029.5 18 10774.0 19 11542.0 20 12310.0 21 13359.0 22 14408.0 23 16108.5 24 17809.0 25 19768.0 26 21727.0 27 27508.5 28 33290.0 29 38140.0 30 42990.0 31 51605.5 32 60221.0 33 68154.0 34 76087.0 35 86821.0 36 97555.0 37 102732.5 38 107910.0 39 116382.5 40 124855.0 41 143816.0 42 162777.0 43 176644.0 44 190511.0 45 200093.5 46 209676.0 47 203104.5 48 196533.0 49 188560.5 50 180588.0 51 158673.5 52 136759.0 53 121627.0 54 106495.0 55 96956.0 56 87417.0 57 82872.0 58 78327.0 59 73685.0 60 69043.0 61 63255.0 62 57467.0 63 50603.5 64 43740.0 65 36600.5 66 29461.0 67 24426.5 68 19392.0 69 16900.0 70 14408.0 71 11793.0 72 9178.0 73 8093.0 74 7008.0 75 5852.5 76 4697.0 77 3412.0 78 2127.0 79 1520.5 80 914.0 81 793.0 82 672.0 83 436.5 84 201.0 85 129.0 86 57.0 87 32.5 88 8.0 89 17.0 90 26.0 91 15.0 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2308644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.96535336202816 #Duplication Level Percentage of deduplicated Percentage of total 1 79.08359401852272 18.161826817745506 2 6.816445481888649 3.1308415832914633 3 2.4145664744957003 1.6635411690870092 4 1.3727088240140306 1.2609897282662537 5 0.9445171743414259 1.0845585332627603 6 0.7218139051545415 0.9946026836099716 7 0.5791413004028385 0.9310129227206981 8 0.46998700278833344 0.8634734075675674 9 0.4103995080196273 0.8482472749145925 >10 5.171280096678557 27.995640470784288 >50 1.4308622826284372 22.966176254575796 >100 0.5814335692163584 18.967987125531398 >500 0.0017207798023019482 0.27333502050856096 >1k 0.0013383842906792929 0.5102692808562227 >5k 1.9119775581132755E-4 0.3474977272778717 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7914 0.34279862984505194 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2646 0.11461273370861856 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.086890832887184 0.0 2 0.0 0.0 0.0 0.3055473256162492 0.0 3 0.0 0.0 0.0 0.4244482908581834 0.0 4 0.0 0.0 0.0 0.6745951303015969 0.0 5 0.0 0.0 0.0 1.0763894303322643 0.0 6 0.0 0.0 0.0 1.6845819450725188 0.0 7 0.0 0.0 0.0 1.9829389026632083 0.0 8 0.0 0.0 0.0 2.8234755986631113 0.0 9 0.0 0.0 0.0 3.149511141605202 0.0 10 0.0 0.0 0.0 3.6859732379699945 0.0 11 0.0 0.0 0.0 4.11367018908069 0.0 12 0.0 0.0 0.0 4.497531884517492 0.0 13 0.0 0.0 0.0 4.693491070949007 0.0 14 0.0 0.0 0.0 4.781767998877263 0.0 15 0.0 0.0 0.0 4.885162025847207 0.0 16 0.0 0.0 0.0 5.063318554094958 0.0 17 0.0 0.0 0.0 5.2638258648799905 0.0 18 0.0 0.0 0.0 5.548191925649862 0.0 19 0.0 0.0 0.0 5.680174162841911 0.0 20 0.0 0.0 0.0 5.82159917250126 0.0 21 0.0 0.0 0.0 5.997849820067538 0.0 22 0.0 0.0 0.0 6.190646977186608 0.0 23 0.0 0.0 0.0 6.416797046231467 0.0 24 0.0 0.0 0.0 6.593567479438146 0.0 25 0.0 0.0 0.0 6.7445652079748974 0.0 26 0.0 0.0 0.0 6.894350103350711 0.0 27 0.0 0.0 0.0 7.041406124114415 0.0 28 0.0 0.0 0.0 7.198251441105688 0.0 29 0.0 0.0 0.0 7.3617673404821184 0.0 30 0.0 0.0 0.0 7.5940248908017 0.0 31 0.0 0.0 0.0 7.778548793144374 0.0 32 0.0 0.0 0.0 7.965844885569191 0.0 33 0.0 0.0 0.0 8.143568259116607 0.0 34 0.0 0.0 0.0 8.313581478998062 0.0 35 0.0 0.0 0.0 8.519763116357481 0.0 36 0.0 0.0 0.0 8.708358672883303 0.0 37 0.0 0.0 0.0 8.893965461976814 0.0 38 0.0 0.0 0.0 9.096421968913354 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 6580 0.0 41.12462 1 TACGGGA 620 0.0 40.806454 4 TAATGCG 65 0.0 40.615383 1 TATCACG 50 1.3496901E-9 39.600002 1 ATTAGCG 150 0.0 38.13333 1 AGGGTAC 545 0.0 37.944954 6 GTTACGG 215 0.0 37.860466 2 TGTACGG 390 0.0 37.794872 2 CGTAAGG 545 0.0 37.541283 2 GCGATAA 170 0.0 37.52941 9 CTAGACG 65 1.0913936E-11 37.230766 1 TTAGGGA 2685 0.0 36.707634 4 AGGGCGA 2560 0.0 36.695312 6 TCGTAAG 210 0.0 36.666668 1 TTACGCG 90 0.0 36.666668 1 TACGGTC 60 1.9826984E-10 36.666664 4 ACGGGAT 1100 0.0 36.4 5 TCGTCCC 780 0.0 36.384617 38 ACCGGGT 85 0.0 36.235294 4 TAGCACG 85 0.0 36.235294 1 >>END_MODULE