##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546631_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2308249 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.070556945979398 31.0 31.0 33.0 30.0 34.0 2 31.454162440880513 31.0 31.0 34.0 30.0 34.0 3 31.59914160040793 31.0 31.0 34.0 30.0 34.0 4 35.36979632613293 37.0 35.0 37.0 33.0 37.0 5 35.164835769451216 37.0 35.0 37.0 32.0 37.0 6 35.2440373633867 37.0 35.0 37.0 32.0 37.0 7 35.7775001743746 37.0 35.0 37.0 35.0 37.0 8 35.82939059001 37.0 35.0 37.0 35.0 37.0 9 37.60570371740657 39.0 37.0 39.0 35.0 39.0 10 36.86302214362489 39.0 37.0 39.0 32.0 39.0 11 36.4435418362577 38.0 35.0 39.0 32.0 39.0 12 36.09501791184573 38.0 35.0 39.0 31.0 39.0 13 35.99845250664031 38.0 35.0 39.0 31.0 39.0 14 36.98288226270216 39.0 35.0 41.0 31.0 41.0 15 37.150546149917105 39.0 35.0 41.0 32.0 41.0 16 37.17623315335564 39.0 35.0 41.0 32.0 41.0 17 37.082509296007494 39.0 35.0 41.0 32.0 41.0 18 37.00502762050368 38.0 35.0 40.0 31.0 41.0 19 36.98381500436045 38.0 35.0 40.0 31.0 41.0 20 36.87195315583371 38.0 35.0 40.0 31.0 41.0 21 36.78714341477024 38.0 35.0 40.0 31.0 41.0 22 36.71248812411486 38.0 35.0 40.0 31.0 41.0 23 36.50398288919436 38.0 35.0 40.0 30.0 41.0 24 36.47799132589248 38.0 35.0 40.0 30.0 41.0 25 36.34616499346474 38.0 35.0 40.0 30.0 41.0 26 36.26065038910447 38.0 35.0 40.0 30.0 41.0 27 36.10757418285462 38.0 35.0 40.0 30.0 41.0 28 36.07816444413059 38.0 35.0 40.0 30.0 41.0 29 35.97991594494355 38.0 34.0 40.0 30.0 41.0 30 35.96020836573524 38.0 35.0 40.0 30.0 41.0 31 35.9152812369896 38.0 34.0 40.0 30.0 41.0 32 35.73313321049852 38.0 34.0 40.0 29.0 41.0 33 35.54837454711342 38.0 34.0 40.0 27.0 41.0 34 35.457607909718575 38.0 34.0 40.0 27.0 41.0 35 35.244430735158986 38.0 34.0 40.0 26.0 41.0 36 35.08675233911073 38.0 34.0 40.0 25.0 41.0 37 35.167384021394575 38.0 34.0 40.0 25.0 41.0 38 35.14096312832801 38.0 34.0 40.0 26.0 41.0 39 35.07948275944233 38.0 34.0 40.0 25.0 41.0 40 35.07680150624998 38.0 34.0 40.0 25.0 41.0 41 35.10171606269514 38.0 34.0 40.0 25.0 41.0 42 34.882792107783864 38.0 34.0 40.0 24.0 41.0 43 34.952106553495746 38.0 34.0 40.0 25.0 41.0 44 34.778586279036624 38.0 34.0 40.0 24.0 41.0 45 34.618999943247026 38.0 33.0 40.0 24.0 41.0 46 34.707298476030964 38.0 33.0 40.0 24.0 41.0 47 34.58331055271766 37.0 33.0 40.0 24.0 41.0 48 34.63747065416253 37.0 33.0 40.0 24.0 41.0 49 34.565805942079905 37.0 33.0 40.0 24.0 41.0 50 34.08240748723383 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 1.0 13 5.0 14 16.0 15 27.0 16 151.0 17 403.0 18 938.0 19 1940.0 20 3497.0 21 5683.0 22 8532.0 23 12721.0 24 18213.0 25 26133.0 26 35061.0 27 41649.0 28 47188.0 29 54170.0 30 65355.0 31 80267.0 32 97948.0 33 124474.0 34 178110.0 35 228831.0 36 193093.0 37 239308.0 38 338765.0 39 505768.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.115771738664243 25.203823331018448 30.17642377403824 14.503981156279067 2 30.00733456399201 26.29720623728203 30.490471348628333 13.204987850097627 3 26.947915931080225 26.390523725993166 33.21851325398603 13.443047088940578 4 23.800161940934448 29.487633266601655 32.35534814484919 14.356856647614707 5 21.982030534833978 33.30320948909758 31.21755928411536 13.49720069195308 6 21.35384873988898 41.840200082400116 27.091574609151785 9.714376568559112 7 90.70845476376249 2.7571115594548075 5.642415527960805 0.8920181488218992 8 91.59384451157567 1.9859642525568082 5.285348331137586 1.1348429047299489 9 85.47998937722923 5.511667068847425 6.925639304945004 2.082704248978338 10 37.626053341732195 41.928188856574835 11.86024558009123 8.585512221601741 11 25.858172146939083 25.200184208896008 33.96500984079274 14.976633803372167 12 27.327121120814958 23.90093096542011 32.1851325398603 16.586815373904635 13 20.81001659699625 31.400208556355924 32.10255912598684 15.687215720660985 14 17.856219151400044 33.4202679173694 31.2354949574331 17.488017973797454 15 16.249763348754836 27.401723124324974 39.37231208591447 16.976201441005713 16 19.074631896298882 25.22648119851888 38.61546133021177 17.083425574970466 17 19.51492235023171 24.291226813051797 32.52352757436481 23.67032326235168 18 20.521659491675294 25.40783078428714 34.96130616757551 19.109203556462063 19 23.42533236232313 26.37258805267543 31.526927987405173 18.675151597596273 20 24.732210433103187 26.716311801716365 30.750928517677252 17.800549247503195 21 22.25271190413166 27.779325367410536 32.12482708754558 17.843135640912227 22 21.97713504912165 26.329568430442297 30.554935797654416 21.13836072278164 23 18.7571618139984 29.323829448209445 31.29580040974782 20.62320832804433 24 18.602455800912292 27.191043947165145 36.677585477130066 17.528914774792494 25 18.297592677393123 28.235428673423012 34.83861576459039 18.628362884593475 26 18.369422016428906 31.927967909874543 30.894240612689533 18.808369461007025 27 17.708531445264352 32.06456495811327 31.80341462294579 18.423488973676584 28 17.224744817391883 29.88195814229747 35.42425448900877 17.469042551301875 29 17.689729314298415 26.794509604466416 35.63835617387899 19.877404907356183 30 18.638976990783924 29.417276905567814 33.00640442170667 18.937341681941593 31 22.12135692466454 28.331215566431524 31.23848423631939 18.308943272584543 32 23.07606328433371 27.869393639940927 31.40999952778058 17.644543547944785 33 22.521963618309808 28.404301269057196 30.749022310851217 18.324712801781786 34 19.549060781570795 28.565679006034443 31.34882761781766 20.5364325945771 35 19.012506882922942 28.394726912044582 32.66809603296698 19.924670172065493 36 23.08884353464466 28.073271124562382 29.936458328369252 18.901427012423703 37 19.564873633650443 31.00826643919265 31.458174573020504 17.968685354136404 38 19.754931118783112 30.552163133180173 29.921988485644313 19.770917262392402 39 20.237764643242564 30.870023121422342 30.20969574772912 18.682516487605973 40 22.2658820603843 28.596611544075184 29.611450064529432 19.526056331011084 41 18.630312414301923 27.840800537550326 30.936610391686514 22.59227665646124 42 20.42283999689808 28.232006165712626 29.686615265510785 21.65853857187851 43 20.369856111710654 27.811211008864294 30.622476171331602 21.19645670809345 44 18.993011585838442 30.076997758907293 30.99435979393904 19.935630861315225 45 18.338142895328883 32.31761391427008 29.128139988363472 20.216103202037562 46 20.19422514642051 31.113021168860033 29.764899714025656 18.927853970693803 47 19.502791943156915 29.201398982518782 30.643444446418044 20.652364627906262 48 20.118756685262294 28.263241963930234 32.06274539705205 19.55525595375542 49 20.277015174706023 27.216864385081507 32.33628607658879 20.169834363623682 50 19.255764867655092 30.621696359448226 30.739664568250653 19.382874204646033 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1499.0 1 2050.0 2 2601.0 3 10905.5 4 19210.0 5 14751.0 6 10292.0 7 10666.5 8 11041.0 9 11614.5 10 12188.0 11 12247.0 12 12306.0 13 12433.5 14 12561.0 15 12246.0 16 11931.0 17 11868.0 18 11805.0 19 12137.0 20 12469.0 21 14834.0 22 17199.0 23 19688.5 24 22178.0 25 26880.5 26 31583.0 27 38822.5 28 46062.0 29 55135.5 30 64209.0 31 73302.5 32 82396.0 33 93582.5 34 104769.0 35 112213.5 36 119658.0 37 127819.0 38 135980.0 39 145726.5 40 155473.0 41 168811.5 42 182150.0 43 193844.0 44 205538.0 45 205115.0 46 204692.0 47 191706.5 48 178721.0 49 170128.0 50 161535.0 51 142484.0 52 123433.0 53 108680.0 54 93927.0 55 83789.5 56 73652.0 57 65653.0 58 57654.0 59 51317.5 60 44981.0 61 39597.0 62 34213.0 63 27780.0 64 21347.0 65 16970.5 66 12594.0 67 9429.5 68 6265.0 69 5295.0 70 4325.0 71 3357.5 72 2390.0 73 1984.0 74 1578.0 75 1252.0 76 926.0 77 676.0 78 426.0 79 342.0 80 258.0 81 176.0 82 94.0 83 92.0 84 90.0 85 61.5 86 33.0 87 20.0 88 7.0 89 6.5 90 6.0 91 4.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2308249.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.409927287056895 #Duplication Level Percentage of deduplicated Percentage of total 1 77.91448873901365 15.90229049771482 2 6.231541756486334 2.543706282722898 3 2.3060268287322767 1.4119751968928451 4 1.4246077348026476 1.1630456111960346 5 0.9925043974036519 1.0128471291546377 6 0.797623037341637 0.9767656916774565 7 0.6402898263141539 0.9147788158399917 8 0.5573897962100888 0.9101028168956298 9 0.4781003025324985 0.8782193169547379 >10 6.262435653305347 30.32363836978837 >50 1.7481925915834564 25.16370283245332 >100 0.6459412283468241 18.206519081121208 >500 2.1452698183819136E-4 0.0302115126929619 >1k 4.290539636763827E-4 0.13700264234243156 >5k 2.1452698183819136E-4 0.4251942025526855 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9711 0.42070851108350965 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014989717313859986 0.0 2 0.0 0.0 0.0 0.08625585887830992 0.0 3 0.0 0.0 0.0 0.13871986947681988 0.0 4 0.0 0.0 0.0 0.2199069511131598 0.0 5 0.0 0.0 0.0 0.35589747899814966 0.0 6 0.0 0.0 0.0 0.5839924548867995 0.0 7 0.0 0.0 0.0 0.6994912593918594 0.0 8 0.0 0.0 0.0 0.9767577068158592 0.0 9 0.0 0.0 0.0 1.125961713835899 0.0 10 0.0 0.0 0.0 1.357219260140479 0.0 11 0.0 0.0 0.0 1.5689381864781486 0.0 12 0.0 0.0 0.0 1.7481649510083184 0.0 13 8.664576481999992E-5 0.0 0.0 1.8429120948389883 0.0 14 8.664576481999992E-5 0.0 0.0 1.8916503375502383 0.0 15 8.664576481999992E-5 0.0 0.0 1.9384823734354482 0.0 16 8.664576481999992E-5 0.0 0.0 2.025734658609188 0.0 17 8.664576481999992E-5 0.0 0.0 2.127890015331968 0.0 18 8.664576481999992E-5 0.0 0.0 2.2652235525716677 0.0 19 8.664576481999992E-5 0.0 0.0 2.3362297568416577 0.0 20 8.664576481999992E-5 0.0 0.0 2.411871509529518 0.0 21 8.664576481999992E-5 0.0 0.0 2.506575330477778 0.0 22 8.664576481999992E-5 0.0 0.0 2.6116333203220274 0.0 23 8.664576481999992E-5 0.0 0.0 2.7309445384791675 0.0 24 8.664576481999992E-5 0.0 0.0 2.8251284848385074 0.0 25 8.664576481999992E-5 0.0 0.0 2.9033262875885573 0.0 26 8.664576481999992E-5 0.0 0.0 2.9834302971646474 0.0 27 8.664576481999992E-5 0.0 0.0 3.075318130756257 0.0 28 8.664576481999992E-5 0.0 0.0 3.1660795694052073 0.0 29 8.664576481999992E-5 0.0 0.0 3.266502010831587 0.0 30 8.664576481999992E-5 0.0 0.0 3.393221441880837 0.0 31 8.664576481999992E-5 0.0 0.0 3.507853788737697 0.0 32 8.664576481999992E-5 0.0 0.0 3.612348581110617 0.0 33 8.664576481999992E-5 0.0 0.0 3.7146772293630366 0.0 34 8.664576481999992E-5 0.0 0.0 3.8231577269176764 0.0 35 8.664576481999992E-5 0.0 0.0 3.9543394148551565 0.0 36 8.664576481999992E-5 0.0 0.0 4.0734340186002465 0.0 37 8.664576481999992E-5 0.0 0.0 4.193828308817636 0.0 38 8.664576481999992E-5 0.0 0.0 4.321110937338216 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGTA 20 7.8581314E-4 44.000004 21 ACCGAAC 20 7.8581314E-4 44.000004 24 CTACGCG 35 1.4469333E-7 44.0 1 CGTTTTT 8610 0.0 41.44483 1 CGGTCTA 80 0.0 41.250004 31 TATCGCG 55 7.8216544E-11 40.0 1 GCGATCG 50 1.3496901E-9 39.6 9 GCGCGAC 135 0.0 39.11111 9 TAACGCG 45 2.3526809E-8 39.111107 1 CGGGTCA 85 0.0 38.82353 6 ACGCGAG 80 0.0 38.500004 1 CGTTCGG 40 4.1269413E-7 38.500004 2 CGTACTA 40 4.1269413E-7 38.500004 38 GCGTAAG 160 0.0 38.500004 1 GGCGCGA 140 0.0 37.714287 8 TTAATCG 375 0.0 37.546665 20 CGAAAGG 370 0.0 37.45946 2 TACGGGA 1025 0.0 37.34634 4 GCGATAC 195 0.0 37.23077 9 TAGGGAC 3015 0.0 37.14096 5 >>END_MODULE