##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546627_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1915799 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.99718603047606 31.0 31.0 33.0 30.0 34.0 2 31.36627276661069 31.0 31.0 34.0 30.0 34.0 3 31.539066467828828 31.0 31.0 34.0 30.0 34.0 4 35.310047661576185 37.0 35.0 37.0 33.0 37.0 5 35.09964876273555 37.0 35.0 37.0 32.0 37.0 6 35.179246883415225 37.0 35.0 37.0 32.0 37.0 7 35.702146728336324 37.0 35.0 37.0 35.0 37.0 8 35.74907962682933 37.0 35.0 37.0 35.0 37.0 9 37.535654314466186 39.0 37.0 39.0 35.0 39.0 10 36.770059385144265 39.0 37.0 39.0 32.0 39.0 11 36.338302713384856 38.0 35.0 39.0 32.0 39.0 12 35.71757266811393 37.0 35.0 39.0 31.0 39.0 13 35.47119713498128 37.0 35.0 39.0 30.0 39.0 14 36.38918592190517 38.0 35.0 40.0 30.0 41.0 15 36.65546124619545 38.0 35.0 40.0 31.0 41.0 16 36.75572176413079 38.0 35.0 40.0 31.0 41.0 17 36.684648546115746 38.0 35.0 40.0 31.0 41.0 18 36.646832992396384 38.0 35.0 40.0 31.0 41.0 19 36.617321023760844 38.0 35.0 40.0 31.0 41.0 20 36.45756940054776 38.0 35.0 40.0 31.0 41.0 21 36.349026176545664 38.0 35.0 40.0 31.0 41.0 22 36.25395879212798 38.0 34.0 40.0 30.0 41.0 23 36.120309072089505 38.0 34.0 40.0 30.0 41.0 24 36.072916313245805 38.0 34.0 40.0 30.0 41.0 25 35.94905624233022 37.0 34.0 40.0 30.0 41.0 26 35.84973736806418 37.0 34.0 40.0 30.0 41.0 27 35.693397898213746 37.0 34.0 40.0 29.0 41.0 28 35.69416415813976 37.0 34.0 40.0 29.0 41.0 29 35.606638274683306 37.0 34.0 40.0 29.0 41.0 30 35.56742278287023 37.0 34.0 40.0 29.0 41.0 31 35.46068611581904 37.0 34.0 40.0 29.0 41.0 32 35.24761313686874 37.0 34.0 40.0 27.0 41.0 33 35.03047866712531 37.0 34.0 40.0 27.0 41.0 34 34.97926243828293 37.0 34.0 40.0 26.0 41.0 35 34.78558293432662 37.0 33.0 40.0 25.0 41.0 36 34.55726879489967 37.0 33.0 40.0 24.0 41.0 37 34.62241863577547 37.0 33.0 40.0 24.0 41.0 38 34.61320315962165 37.0 33.0 40.0 24.0 41.0 39 34.54834666893552 37.0 33.0 40.0 24.0 41.0 40 34.509586861669725 37.0 33.0 40.0 24.0 41.0 41 34.56025658224062 37.0 33.0 40.0 24.0 41.0 42 34.31489837921411 37.0 33.0 40.0 23.0 41.0 43 34.3795507775085 37.0 33.0 40.0 23.0 41.0 44 34.20684842198999 37.0 33.0 40.0 23.0 41.0 45 34.04321434555504 36.0 33.0 40.0 23.0 41.0 46 34.13630761890992 36.0 33.0 40.0 23.0 41.0 47 34.027482528177536 36.0 33.0 40.0 23.0 41.0 48 34.08804055122693 36.0 33.0 40.0 23.0 41.0 49 34.0231407365804 36.0 33.0 40.0 23.0 41.0 50 33.51018765538556 35.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 16.0 15 39.0 16 149.0 17 464.0 18 1057.0 19 2095.0 20 3743.0 21 5971.0 22 8925.0 23 12866.0 24 18051.0 25 24777.0 26 32155.0 27 37799.0 28 43267.0 29 49980.0 30 59602.0 31 72120.0 32 88894.0 33 112034.0 34 169371.0 35 229794.0 36 147913.0 37 178036.0 38 248991.0 39 367686.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.61641748429767 24.886431196592127 29.975795999475935 12.521355319634262 2 28.12513212502982 27.86680648648423 30.367068779136012 13.640992609349937 3 27.205620213811578 26.600494101938672 32.93711918630295 13.25676649794681 4 23.557794946129526 30.034779222663754 32.07293667028744 14.334489160919281 5 21.987692863395377 33.991874930512026 30.67143265029369 13.348999555798912 6 21.073191916270968 42.681147656930605 26.520997244491724 9.724663182306703 7 90.34475954940994 3.5775151777404623 5.126738243416976 0.9509870294326284 8 91.00505846385764 2.823678266874552 4.567545969070868 1.6037173001969411 9 85.55156360348867 6.069060480770686 6.384960008852703 1.9944159068879357 10 41.22102579654755 38.656403933815604 11.447390879732163 8.675179389904681 11 33.20572774074942 24.185679186595255 29.644550393856555 12.964042678798767 12 32.276820271855236 24.7440884978017 28.155876477647183 14.823214752695874 13 20.436590686183674 37.098568273602815 28.83507090253205 13.629770137681458 14 16.816586708730927 39.93007617187398 28.29091152046744 14.962425598927654 15 14.782657262061417 26.816435335857257 43.48582497433186 14.915082427749466 16 16.67346104680084 24.634317065621183 42.13630970681162 16.555912180766356 17 17.202587536583952 23.705409596727005 31.060878515961228 28.031124350727815 18 19.369411926825308 26.043911704724763 35.93889546867913 18.6477808997708 19 25.0755950911343 25.93403587745896 29.593240209437422 19.39712882196932 20 26.528096110291322 27.317322955069923 28.670961828459042 17.483619106179717 21 21.383610702375353 30.48487863288372 29.92704349464636 18.204467170094567 22 21.26366074937924 27.158329240176034 28.1027393792355 23.475270631209224 23 17.762719366697656 32.31915247893959 28.143975437924336 21.774152716438415 24 16.65242543711527 27.814191363498992 39.00388297519729 16.529500224188446 25 15.787459957960099 28.409191152098938 37.25161146863528 18.55173742130568 26 16.02882139514636 35.059262480040964 30.302709209055855 18.609206915756822 27 16.331619340024712 36.35757195822735 29.867329505861523 17.443479195886415 28 15.302753576967104 31.470942410973173 36.83022070686956 16.39608330519016 29 15.039469171870326 27.058684131268468 37.163241028938835 20.738605667922368 30 17.442435245033533 33.262466469603545 31.757454722546573 17.53764356281635 31 24.734536347497833 29.5497596564149 28.005286567118993 17.710417428968277 32 26.067870376798403 28.22655195038728 29.12121783130694 16.584359841507382 33 24.888310308127316 29.54814153259293 27.400891220843103 18.16265693843665 34 18.472136168773446 29.37672480254975 29.24884082307173 22.902298205605078 35 18.515616721795972 28.934350628641102 31.54527171169836 21.004760937864567 36 26.427146062817652 27.960709865700945 27.79769694002346 17.814447131457946 37 18.954859043145966 34.29503825818888 29.299576834521783 17.45052586414337 38 18.267939381949777 34.84259048052536 26.845039589226218 20.044430548298646 39 18.926254789777005 34.09313816324155 28.61469287748871 18.36591416949273 40 22.720807349831585 28.604305566502543 27.686463976648906 20.988423107016967 41 18.070893658468346 26.94170943820307 28.89802113896082 26.089375764367766 42 19.214541817800303 27.52047579104071 28.252911709422545 25.012070681736446 43 19.21094018735786 27.150082028438266 29.690014453499558 23.948963330704316 44 18.008413199923375 30.46253808463205 30.93424727750667 20.594801437937903 45 16.43298696783953 36.076122808290435 27.5170307532262 19.97385947064384 46 19.694759210125905 34.21251394326858 27.588332596478022 18.504394250127493 47 19.19679465330131 29.949801623239182 28.63520651174784 22.21819721171167 48 19.83757168680013 28.193563103436215 32.85396850087092 19.11489670889274 49 20.333239551748385 27.12283491117805 32.88079803778998 19.66312749928359 50 19.07825403395659 33.4279326797853 28.925007268507812 18.568806017750298 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1852.0 1 2238.0 2 2624.0 3 6590.5 4 10557.0 5 8808.0 6 7059.0 7 7786.5 8 8514.0 9 9395.5 10 10277.0 11 10549.5 12 10822.0 13 11275.0 14 11728.0 15 11384.5 16 11041.0 17 11267.0 18 11493.0 19 11989.0 20 12485.0 21 13701.5 22 14918.0 23 15719.5 24 16521.0 25 20465.5 26 24410.0 27 28905.0 28 33400.0 29 39446.0 30 45492.0 31 53795.0 32 62098.0 33 69796.5 34 77495.0 35 84477.5 36 91460.0 37 96214.5 38 100969.0 39 115906.0 40 130843.0 41 148688.5 42 166534.0 43 184671.0 44 202808.0 45 203366.5 46 203925.0 47 186273.0 48 168621.0 49 153367.5 50 138114.0 51 118816.5 52 99519.0 53 87308.0 54 75097.0 55 64393.5 56 53690.0 57 43797.0 58 33904.0 59 29982.0 60 26060.0 61 23286.5 62 20513.0 63 16156.0 64 11799.0 65 9255.0 66 6711.0 67 5627.5 68 4544.0 69 3936.0 70 3328.0 71 2538.0 72 1748.0 73 1432.5 74 1117.0 75 966.0 76 815.0 77 622.5 78 430.0 79 375.5 80 321.0 81 205.5 82 90.0 83 64.5 84 39.0 85 24.0 86 9.0 87 6.5 88 4.0 89 2.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1915799.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.75438337097487 #Duplication Level Percentage of deduplicated Percentage of total 1 81.47512099097176 16.9096589624319 2 6.425446053225395 2.667123414363145 3 2.2338776272492864 1.3908825803932616 4 1.1351591104288916 0.9423810945958406 5 0.7914202069427154 0.821271919121269 6 0.572643301656953 0.7130915170445526 7 0.4551730838427392 0.6612785677554769 8 0.3937704599015205 0.6537970467968995 9 0.3036366664703337 0.5671612603269124 >10 3.8549061342905517 18.842263361136744 >50 1.3452717117658228 20.083543527856364 >100 1.0072302951366867 34.550004959480994 >500 0.005329260818550348 0.646410272800913 >1k 0.001015097298771495 0.5511315158957675 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4882 0.2548284031884347 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3014 0.15732339352927943 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04713438100761092 0.0 2 0.0 0.0 0.0 0.15147726875314163 0.0 3 0.0 0.0 0.0 0.21547145603479279 0.0 4 0.0 0.0 0.0 0.36402566239986556 0.0 5 0.0 0.0 0.0 0.5683790418514677 0.0 6 0.0 0.0 0.0 0.9051575869911196 0.0 7 0.0 0.0 0.0 1.0570524360854139 0.0 8 0.0 0.0 0.0 1.5227067140133177 0.0 9 0.0 0.0 0.0 1.7405270594670945 0.0 10 0.0 0.0 0.0 2.0960445224159736 0.0 11 0.0 0.0 0.0 2.3925787621770342 0.0 12 0.0 0.0 0.0 2.639681929054144 0.0 13 0.0 0.0 0.0 2.7718983045716175 0.0 14 0.0 0.0 0.0 2.8317688859843857 0.0 15 0.0 0.0 0.0 2.8922136403662386 0.0 16 0.0 0.0 0.0 3.0073092218964517 0.0 17 0.0 0.0 0.0 3.1456327099032833 0.0 18 0.0 0.0 0.0 3.3243048983739945 0.0 19 0.0 0.0 0.0 3.4139802766365364 0.0 20 0.0 0.0 0.0 3.510389137900166 0.0 21 0.0 0.0 0.0 3.6322182024314658 0.0 22 0.0 0.0 0.0 3.7680362083913814 0.0 23 0.0 0.0 0.0 3.9222277493620155 0.0 24 0.0 0.0 0.0 4.0315816012013785 0.0 25 0.0 0.0 0.0 4.128042660007652 0.0 26 0.0 0.0 0.0 4.23055863376064 0.0 27 0.0 0.0 0.0 4.333179002598916 0.0 28 0.0 0.0 0.0 4.43960979205021 0.0 29 5.21975426440874E-5 0.0 0.0 4.54943342177337 0.0 30 5.21975426440874E-5 0.0 0.0 4.707487580899667 0.0 31 5.21975426440874E-5 0.0 0.0 4.8394951662465635 0.0 32 5.21975426440874E-5 0.0 0.0 4.958818748730947 0.0 33 5.21975426440874E-5 0.0 0.0 5.076732997563941 0.0 34 5.21975426440874E-5 0.0 0.0 5.206496088577142 0.0 35 5.21975426440874E-5 0.0 0.0 5.364759037874015 0.0 36 5.21975426440874E-5 0.0 0.0 5.510494576936307 0.0 37 5.21975426440874E-5 0.0 0.0 5.65586473320009 0.0 38 5.21975426440874E-5 0.0 0.0 5.809429903658995 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 95 0.0 44.000004 28 AGCGTTA 20 7.8577996E-4 44.0 35 CGTATCG 30 2.5286045E-6 44.0 32 GTCGACG 20 7.8577996E-4 44.0 12 ACGCATC 25 4.4439563E-5 44.0 43 TCCGATT 20 7.8577996E-4 44.0 35 GCAACGC 20 7.8577996E-4 44.0 13 TCTAGCG 45 4.802132E-10 44.0 1 CTCGGTA 30 2.5286045E-6 44.0 11 CGGATGT 20 7.8577996E-4 44.0 18 TACTCGA 35 1.4467696E-7 44.0 33 ACGTCGA 25 4.4439563E-5 44.0 34 TTACGCC 20 7.8577996E-4 44.0 41 CGCACTC 35 1.4467696E-7 44.0 19 TCGACCG 20 7.8577996E-4 44.0 18 TCGGTAC 45 4.802132E-10 44.0 36 GCTAGCG 120 0.0 42.166664 1 AATCGAC 95 0.0 41.68421 19 CGTTTTT 5795 0.0 41.418465 1 TGTAACG 75 0.0 41.066666 1 >>END_MODULE