##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546626_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3678641 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.93540060038476 31.0 31.0 33.0 30.0 34.0 2 31.311312791870694 31.0 31.0 34.0 30.0 34.0 3 31.478651762974426 31.0 31.0 34.0 30.0 34.0 4 35.2719384685812 37.0 35.0 37.0 33.0 37.0 5 35.06703807194015 37.0 35.0 37.0 32.0 37.0 6 35.13459100792929 37.0 35.0 37.0 32.0 37.0 7 35.61771670570735 36.0 35.0 37.0 35.0 37.0 8 35.64596545300289 37.0 35.0 37.0 35.0 37.0 9 37.405976011249805 39.0 37.0 39.0 35.0 39.0 10 36.62482177521536 39.0 35.0 39.0 32.0 39.0 11 36.29719915588392 38.0 35.0 39.0 32.0 39.0 12 35.80707304681267 37.0 35.0 39.0 30.0 39.0 13 35.66447419033279 37.0 35.0 39.0 30.0 39.0 14 36.54258298105197 38.0 35.0 40.0 30.0 41.0 15 36.72398665702905 38.0 35.0 40.0 31.0 41.0 16 36.76443773665329 38.0 35.0 40.0 31.0 41.0 17 36.66798499772062 38.0 35.0 40.0 31.0 41.0 18 36.60020262917746 38.0 35.0 40.0 31.0 41.0 19 36.54478270643969 38.0 35.0 40.0 30.0 41.0 20 36.40260057994243 38.0 35.0 40.0 30.0 41.0 21 36.29311993206187 38.0 35.0 40.0 30.0 41.0 22 36.22860779293223 38.0 34.0 40.0 30.0 41.0 23 36.00571624140545 38.0 34.0 40.0 30.0 41.0 24 35.94968141767571 38.0 34.0 40.0 30.0 41.0 25 35.76671629550152 38.0 34.0 40.0 29.0 41.0 26 35.63436687624588 37.0 34.0 40.0 29.0 41.0 27 35.45825183811087 37.0 34.0 40.0 28.0 41.0 28 35.38504001885479 37.0 34.0 40.0 27.0 41.0 29 35.24468519760423 37.0 34.0 40.0 27.0 41.0 30 35.207066142088884 37.0 34.0 40.0 27.0 41.0 31 35.13680160689776 37.0 34.0 40.0 27.0 41.0 32 34.961860371805784 37.0 33.0 40.0 26.0 41.0 33 34.758742698730316 37.0 33.0 40.0 25.0 41.0 34 34.60326000824761 37.0 33.0 40.0 24.0 41.0 35 34.38749554522988 37.0 33.0 40.0 24.0 41.0 36 34.17986669533668 37.0 33.0 40.0 23.0 41.0 37 34.24664434501763 37.0 33.0 40.0 23.0 41.0 38 34.16238551138858 37.0 33.0 40.0 23.0 41.0 39 34.06040545951616 37.0 33.0 40.0 23.0 41.0 40 34.00276922918002 36.0 33.0 40.0 23.0 41.0 41 34.001161026585635 36.0 33.0 40.0 23.0 41.0 42 33.76481341886854 36.0 32.0 40.0 22.0 41.0 43 33.799495520220646 36.0 33.0 40.0 23.0 41.0 44 33.591337398783956 36.0 32.0 40.0 22.0 41.0 45 33.33520096144201 35.0 32.0 40.0 21.0 41.0 46 33.43193695715347 35.0 32.0 40.0 22.0 41.0 47 33.279841387077454 35.0 32.0 40.0 21.0 41.0 48 33.33831406761356 35.0 32.0 39.0 22.0 41.0 49 33.238734358693875 35.0 32.0 39.0 21.0 41.0 50 32.75777603740077 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 6.0 13 14.0 14 38.0 15 134.0 16 412.0 17 1150.0 18 2557.0 19 4967.0 20 8576.0 21 13331.0 22 19984.0 23 28847.0 24 40181.0 25 53610.0 26 69326.0 27 82179.0 28 93441.0 29 106122.0 30 124705.0 31 147678.0 32 178040.0 33 220788.0 34 314145.0 35 376398.0 36 321036.0 37 386516.0 38 493740.0 39 590718.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.63609006695679 23.72397850184348 28.32575943126823 14.314171999931496 2 32.15698406014613 25.714713667357046 28.594499979747955 13.53380229274887 3 29.02194043941771 25.75717500022427 31.5883773382616 13.632507222096422 4 25.432571430590805 28.512295709203478 30.830053816069576 15.225079044136136 5 22.57105273387645 33.00074674315868 29.992081314811635 14.436119208153228 6 21.40216998614434 41.18417643907084 27.14741666827505 10.266236906509768 7 88.43176053330563 3.5372030051315146 6.66425454400144 1.3667819175614038 8 88.67345304964523 3.0601790171968397 6.482747297167622 1.7836206359903017 9 82.82411901569084 5.137739725077821 8.889451294649302 3.148689964582029 10 41.682947588525224 26.494077568319383 17.411348375663728 14.411626467491665 11 34.43162841929941 25.558868071116482 24.282065034342846 15.727438475241264 12 31.21829501710007 22.09449087312407 28.60482988146981 18.08238422830605 13 24.090608461113764 27.738368598621065 29.730354225922017 18.44066871434315 14 20.896303825244157 29.488879181197618 30.853214543088058 18.76160245047016 15 20.198600515788304 23.681707456639558 37.272867887896645 18.846824139675494 16 22.600628873543247 21.51041648260866 36.351848413585344 19.53710623026275 17 22.96818308717812 21.529119041515603 29.85817316775407 25.644524703552207 18 24.390556186374262 22.731383682180457 32.04688905495263 20.831171076492648 19 27.229539386963825 24.802719265076423 27.43208701256796 20.535654335391794 20 29.10433499762548 24.324662286969563 26.891724416707145 19.67927829869781 21 26.35070940600075 25.994789923778917 28.867426856820224 18.787073813400113 22 25.248101132999935 23.677031816912823 27.881057162142213 23.193809887945033 23 23.41671829352198 26.525257561148262 27.93257075099201 22.125453394337747 24 23.109594004959984 24.249417108111395 32.663502635891895 19.977486251036726 25 23.223250107852326 24.133559105115175 30.908914460530397 21.734276326502098 26 21.59966139669514 27.5017051133829 28.38382435252584 22.51480913739612 27 21.369603611768582 28.0209729625696 28.773832510429802 21.83559091523201 28 20.740240757388396 27.504151669053872 31.24689253449847 20.50871503905926 29 21.51414068401891 25.323210392098606 30.57305673481049 22.589592189071997 30 22.683295271270016 26.928966430809638 30.113321740283983 20.274416557636364 31 25.851258657748883 26.211636308082255 27.26025725261041 20.67684778155846 32 27.11237655427643 25.38717423091843 27.212114473796166 20.288334741008978 33 26.608059878634528 26.021783588015246 26.06351095418118 21.306645579169047 34 22.98555363244198 27.50798460627172 27.487080147260905 22.019381614025395 35 22.907671610249547 26.943727316691135 28.57362270468904 21.574978368370274 36 26.880660548284002 27.25933299824582 25.136130435125363 20.723876018344818 37 23.13202076527718 30.533803108267428 25.649336263038442 20.68483986341695 38 23.579631717256454 28.896676789064223 25.66453209215033 21.859159401528988 39 23.029129507337085 28.58183225816273 25.680570623771114 22.708467610729073 40 25.228800527151197 25.707591471959347 27.00622322210838 22.057384778781078 41 21.46923279548072 25.411503867868596 27.736030778757698 25.38323255789298 42 22.36423722782408 26.057149909436667 26.738379744041346 24.84023311869791 43 22.153480048746264 25.25272240482287 28.00142770115377 24.5923698452771 44 22.13681628623179 26.809384226403175 28.52333239367473 22.530467093690305 45 21.32088996996445 28.891430286347592 26.623581915169215 23.164097828518738 46 22.674514854806436 28.125332153912275 26.807046406539808 22.393106584741485 47 21.85464686551365 27.427547292600718 27.88491728331196 22.832888558573668 48 22.633548639293696 26.780868260860462 28.50805501270714 22.077528087138703 49 22.75802395504209 26.061961468922902 29.329526855162 21.85048772087301 50 21.988935587897814 28.261061625747118 27.55373519731879 22.196267589036278 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2756.0 1 4153.0 2 5550.0 3 20463.5 4 35377.0 5 25988.0 6 16599.0 7 17143.5 8 17688.0 9 18433.0 10 19178.0 11 19665.5 12 20153.0 13 20126.0 14 20099.0 15 19827.0 16 19555.0 17 18814.5 18 18074.0 19 18121.5 20 18169.0 21 19698.0 22 21227.0 23 22061.5 24 22896.0 25 27404.5 26 31913.0 27 36698.0 28 41483.0 29 45779.0 30 50075.0 31 62340.5 32 74606.0 33 81905.0 34 89204.0 35 101039.0 36 112874.0 37 121262.5 38 129651.0 39 141898.5 40 154146.0 41 184231.5 42 214317.0 43 226236.5 44 238156.0 45 245440.0 46 252724.0 47 257001.5 48 261279.0 49 259463.0 50 257647.0 51 240397.5 52 223148.0 53 210191.5 54 197235.0 55 195335.0 56 193435.0 57 190625.5 58 187816.0 59 182904.0 60 177992.0 61 167398.0 62 156804.0 63 142254.0 64 127704.0 65 107654.0 66 87604.0 67 74809.5 68 62015.0 69 52539.0 70 43063.0 71 37311.5 72 31560.0 73 25729.0 74 19898.0 75 15871.0 76 11844.0 77 9310.0 78 6776.0 79 5019.5 80 3263.0 81 2628.0 82 1993.0 83 1305.0 84 617.0 85 469.0 86 321.0 87 195.5 88 70.0 89 60.5 90 51.0 91 37.0 92 23.0 93 17.5 94 12.0 95 6.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3678641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.714360367908917 #Duplication Level Percentage of deduplicated Percentage of total 1 79.59913453456605 16.48845157722665 2 6.266407153403483 2.596092319752841 3 2.2850073333979015 1.419973960419562 4 1.2753528572822466 1.0567247472794705 5 0.9039228667227559 0.9362092003044236 6 0.6902927405345088 0.8579383552069959 7 0.5645114141059862 0.8185445004512482 8 0.4681611912654226 0.7758127700913198 9 0.40282382571047853 0.7509814101491927 >10 5.176417302846001 25.386806772009706 >50 1.5738242507844529 23.187865332963774 >100 0.7897457344298251 24.30649576439447 >500 0.0029325299673678613 0.4137043476378076 >1k 0.001332968166985388 0.4659454626168316 >5k 0.0 0.0 >10k+ 1.332968166985388E-4 0.5384534794957531 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19501 0.5301142459946485 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022453944269092852 0.0 2 0.0 0.0 0.0 0.07317919851379898 0.0 3 0.0 0.0 0.0 0.11479782887212968 0.0 4 0.0 0.0 0.0 0.1946914635051368 0.0 5 0.0 0.0 0.0 0.31568723341038174 0.0 6 0.0 0.0 0.0 0.6010915444045777 0.0 7 0.0 0.0 0.0 0.7559857023286589 0.0 8 0.0 0.0 0.0 1.1870144436491628 0.0 9 0.0 0.0 0.0 1.4246837351076118 0.0 10 0.0 0.0 0.0 1.761683186807302 0.0 11 0.0 0.0 0.0 1.9930186174731375 0.0 12 0.0 0.0 0.0 2.193282791117698 0.0 13 0.0 0.0 0.0 2.3022088863795083 0.0 14 0.0 0.0 0.0 2.364351400422058 0.0 15 0.0 0.0 0.0 2.4144514237730728 0.0 16 0.0 0.0 0.0 2.4936926435604887 0.0 17 0.0 0.0 0.0 2.5794036439000165 0.0 18 0.0 0.0 0.0 2.708255575904254 0.0 19 0.0 0.0 0.0 2.7729805653772686 0.0 20 0.0 0.0 0.0 2.8455617169492755 0.0 21 0.0 0.0 0.0 2.9300766234052196 0.0 22 0.0 0.0 0.0 3.0222030363930594 0.0 23 0.0 0.0 0.0 3.1281388969459103 0.0 24 0.0 0.0 0.0 3.2147741516500252 0.0 25 0.0 0.0 0.0 3.291976575044969 0.0 26 0.0 0.0 0.0 3.3698857811893035 0.0 27 0.0 0.0 0.0 3.45421039998195 0.0 28 0.0 0.0 0.0 3.5363331186707265 0.0 29 0.0 0.0 0.0 3.633896322038492 0.0 30 0.0 0.0 0.0 3.7807168462483838 0.0 31 0.0 0.0 0.0 3.8885012155304093 0.0 32 0.0 0.0 0.0 4.000906856635371 0.0 33 0.0 0.0 0.0 4.108908697532594 0.0 34 0.0 0.0 0.0 4.225228827711103 0.0 35 0.0 0.0 0.0 4.366096066454976 0.0 36 0.0 0.0 0.0 4.483258899142373 0.0 37 0.0 0.0 0.0 4.603738173961525 0.0 38 0.0 0.0 0.0 4.752053815525897 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 14585 0.0 41.164207 1 TATCGCT 40 4.1278327E-7 38.500004 33 AGGGTAC 1545 0.0 38.019417 6 TACGGGA 955 0.0 37.54974 4 AGGGCGA 4795 0.0 37.20959 6 TAGGGTA 1870 0.0 37.17647 5 GGGCGAT 9060 0.0 36.958057 7 GTAGGGT 1985 0.0 36.79597 4 TAGGGCG 2045 0.0 36.684597 5 GGCGATA 1875 0.0 36.490665 8 ATAGGGC 2070 0.0 36.347824 4 AGGGATT 3645 0.0 36.27435 6 TACGTAG 225 0.0 36.17778 1 ACATACG 730 0.0 36.164383 17 AAGGGAT 3735 0.0 35.871487 5 GCGATAC 270 0.0 35.851852 9 TAAGGGC 2340 0.0 35.726498 4 TAGCGGG 2165 0.0 35.66744 3 GCGATGT 920 0.0 35.630436 9 TAAGGGA 3650 0.0 35.62192 4 >>END_MODULE