##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546625_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1633306 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.957413981213563 31.0 31.0 33.0 30.0 34.0 2 31.33138064759451 31.0 31.0 34.0 30.0 34.0 3 31.502393917612498 31.0 31.0 34.0 30.0 34.0 4 35.26603404383502 37.0 35.0 37.0 33.0 37.0 5 35.063754128130306 37.0 35.0 37.0 32.0 37.0 6 35.131392402893276 37.0 35.0 37.0 32.0 37.0 7 35.63815414870208 37.0 35.0 37.0 35.0 37.0 8 35.67330494102146 37.0 35.0 37.0 35.0 37.0 9 37.43355990855357 39.0 37.0 39.0 35.0 39.0 10 36.66872772156595 39.0 35.0 39.0 32.0 39.0 11 36.26714896045199 38.0 35.0 39.0 31.0 39.0 12 35.568976664507446 37.0 35.0 39.0 30.0 39.0 13 35.27247558020359 37.0 35.0 39.0 30.0 39.0 14 36.153278075265746 38.0 35.0 40.0 30.0 41.0 15 36.43270826164846 38.0 35.0 40.0 30.0 41.0 16 36.54467074755129 38.0 35.0 40.0 31.0 41.0 17 36.46043301132794 38.0 35.0 40.0 31.0 41.0 18 36.405489234717805 38.0 35.0 40.0 31.0 41.0 19 36.355615542953984 38.0 35.0 40.0 30.0 41.0 20 36.20244767361413 38.0 34.0 40.0 30.0 41.0 21 36.061734298410705 38.0 34.0 40.0 30.0 41.0 22 35.98476219397957 38.0 34.0 40.0 30.0 41.0 23 35.81287156234043 37.0 34.0 40.0 30.0 41.0 24 35.75095603640714 37.0 34.0 40.0 30.0 41.0 25 35.582479339450174 37.0 34.0 40.0 29.0 41.0 26 35.4569468305388 37.0 34.0 40.0 29.0 41.0 27 35.25426588771486 37.0 34.0 40.0 28.0 41.0 28 35.21868712904991 36.0 34.0 40.0 27.0 41.0 29 35.11430130055238 36.0 34.0 40.0 27.0 41.0 30 35.085821640280514 36.0 34.0 40.0 27.0 41.0 31 34.99694607134242 36.0 34.0 40.0 27.0 41.0 32 34.81600508416671 36.0 33.0 40.0 26.0 41.0 33 34.60648219011012 36.0 33.0 40.0 25.0 41.0 34 34.502210853324485 36.0 33.0 40.0 25.0 41.0 35 34.289161369639245 36.0 33.0 40.0 24.0 41.0 36 34.0567033978936 36.0 33.0 40.0 23.0 41.0 37 34.103514589427824 36.0 33.0 40.0 23.0 41.0 38 34.04763222568214 36.0 33.0 40.0 23.0 41.0 39 33.95539721276968 36.0 33.0 40.0 23.0 41.0 40 33.8926484075856 36.0 33.0 40.0 23.0 41.0 41 33.914976740427086 36.0 33.0 40.0 23.0 41.0 42 33.695040610883694 35.0 33.0 40.0 23.0 41.0 43 33.72951241224853 35.0 33.0 40.0 23.0 41.0 44 33.513079606638314 35.0 32.0 40.0 22.0 41.0 45 33.32453685959643 35.0 32.0 40.0 22.0 41.0 46 33.413724678657886 35.0 32.0 39.0 23.0 41.0 47 33.260729465268604 35.0 32.0 39.0 22.0 41.0 48 33.31383525193687 35.0 32.0 39.0 22.0 41.0 49 33.227330334915806 35.0 32.0 39.0 22.0 41.0 50 32.72696420633978 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 6.0 14 20.0 15 78.0 16 203.0 17 523.0 18 1169.0 19 2350.0 20 3866.0 21 6058.0 22 9264.0 23 12800.0 24 17631.0 25 23966.0 26 30847.0 27 36423.0 28 41455.0 29 47800.0 30 56455.0 31 67024.0 32 81259.0 33 101792.0 34 152466.0 35 196654.0 36 131241.0 37 155708.0 38 202592.0 39 253654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.5469936435671 24.877212230898557 29.443900897933396 13.131893227600951 2 31.182399378928384 25.782860039698623 29.253122195106123 13.781618386266873 3 29.599413704474237 25.71018535412225 30.92996658311425 13.760434358289261 4 25.489161247188218 28.7896450512029 30.933333986405486 14.787859715203396 5 22.577337008496876 33.19892292075092 30.028298432749285 14.195441638002922 6 21.578871319887394 41.838394030267445 26.800366863282203 9.78236778656296 7 88.28547743043863 4.144416294313497 6.146062036140196 1.4240442391076749 8 88.8713443775998 3.4330370426607137 5.841036523468352 1.854582056271146 9 83.37813000135921 5.359252950763667 8.336833391905742 2.9257836559713857 10 47.0924003218013 25.069399120556714 14.886310342336342 12.951890215305644 11 38.58517632335888 23.645538557992197 23.197612694743057 14.571672423905868 12 35.49720627977856 21.802466898425646 26.276705038737386 16.423621783058408 13 22.66115473769153 33.133595296900886 27.89030347038461 16.314946495022976 14 18.671026739631152 35.51655354232459 28.970260318642065 16.842159399402192 15 17.230757739211146 24.05832097598368 42.04160151251511 16.669319772290066 16 19.319711064552507 20.90826826081579 40.834479270877594 18.937541403754103 17 20.290380369630675 21.004882122517152 29.218591004992327 29.486146502859846 18 22.15598301849133 23.520393606586886 33.48845837828306 20.83516499663872 19 28.028305779811006 24.361754625281485 27.30762024997153 20.302319344935977 20 29.91288833813137 24.101913542226626 26.756774297039254 19.228423822602743 21 24.14997557101976 27.52111361863607 29.03332259845981 19.29558821188436 22 24.01307532085231 24.55314558325262 26.686854759610263 24.746924336284813 23 21.79891581859125 29.246203711980485 26.06357902315916 22.8913014462691 24 20.912676497851596 24.732964919004765 35.85855926568567 18.495799317457966 25 20.655774239487272 24.260181496914846 34.59088499032025 20.493159273277634 26 19.49077515174744 31.018498676916632 28.243819590450286 21.24690658088564 27 19.751473392003703 31.980596409980738 28.35684189000714 19.91108830800842 28 18.869030053155992 28.04440809009457 34.510924468531925 18.575637388217515 29 19.081605039104733 25.026051456371313 33.93497605470132 21.95736744982263 30 20.66440703701572 29.74047728961995 30.225873167673416 19.369242505690913 31 27.33933506642356 26.933287455014554 26.447218096302837 19.28015938225905 32 28.829135507981967 25.416609012640617 26.875306892890862 18.878948586486548 33 28.70062315328542 26.165703181155276 25.73718580596655 19.396487859592753 34 22.053675183952056 26.61381272094758 27.627646013667984 23.70486608143238 35 21.337214214605225 26.34576741896497 30.576940267163653 21.74007809926615 36 28.79631863227099 25.342709816776527 26.435462797540694 19.42550875341179 37 22.784095570578934 31.264808921292154 27.461541193138334 18.489554314990578 38 22.073451025098787 31.2849521155252 25.193870591303774 21.44772626807224 39 21.55395253553223 31.434036243055495 26.476055313578716 20.535955907833557 40 25.176237643160558 26.102702126851916 26.656058325874028 22.065001904113497 41 19.72949343233907 25.18603372546234 27.9319368201672 27.152536022031388 42 21.498176091926435 25.597469182137335 26.298256419801312 26.606098306134918 43 21.470134806337576 26.014292484078304 27.64331974535084 24.87225296423328 44 20.638631095459147 27.52723617007468 29.7654572994895 22.06867543497667 45 19.41552899456685 32.10555768484289 26.173540046996706 22.30537327359356 46 22.167738317253473 30.56579722354537 27.153699306804725 20.112765152396427 47 21.68062812479719 27.45382677832568 27.66248333135371 23.203061765523422 48 22.182922244821242 25.76810469073156 30.76906593130742 21.27990713313978 49 21.986633245699213 25.41764984638518 31.511731420811532 21.08398548710407 50 20.805837975247748 30.885027055554808 27.533481172542075 20.775653796655373 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1949.0 1 2576.5 2 3204.0 3 7614.5 4 12025.0 5 9264.0 6 6503.0 7 6885.0 8 7267.0 9 7892.0 10 8517.0 11 8802.5 12 9088.0 13 9261.0 14 9434.0 15 9207.5 16 8981.0 17 8776.0 18 8571.0 19 8715.5 20 8860.0 21 8906.5 22 8953.0 23 9881.0 24 10809.0 25 12826.5 26 14844.0 27 16815.5 28 18787.0 29 21932.0 30 25077.0 31 28524.0 32 31971.0 33 35433.5 34 38896.0 35 44654.5 36 50413.0 37 53880.0 38 57347.0 39 67923.0 40 78499.0 41 95207.5 42 111916.0 43 127042.0 44 142168.0 45 140029.0 46 137890.0 47 136718.5 48 135547.0 49 127785.0 50 120023.0 51 107883.5 52 95744.0 53 88392.5 54 81041.0 55 76281.5 56 71522.0 57 68336.5 58 65151.0 59 61598.5 60 58046.0 61 55232.5 62 52419.0 63 47613.5 64 42808.0 65 37202.0 66 31596.0 67 27466.0 68 23336.0 69 19866.0 70 16396.0 71 13704.0 72 11012.0 73 9164.5 74 7317.0 75 5778.5 76 4240.0 77 3574.0 78 2908.0 79 2029.5 80 1151.0 81 843.0 82 535.0 83 434.0 84 333.0 85 250.5 86 168.0 87 100.5 88 33.0 89 18.0 90 3.0 91 3.0 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1633306.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.182237844112176 #Duplication Level Percentage of deduplicated Percentage of total 1 80.30285626688828 17.8129705727367 2 5.89232405854886 2.6140986744263035 3 2.095260005877793 1.3943266738691127 4 1.2749720689810304 1.1312693471494806 5 0.9000769739432214 0.9982860757008648 6 0.6788137410250187 0.9034564713161118 7 0.534891409186961 0.8305561921550247 8 0.4499497135387893 0.7984713250886053 9 0.4073825036942176 0.8132990031427537 >10 5.3090961233569445 28.019811057495993 >50 1.5321464978973003 23.65375442857454 >100 0.6205564739126774 20.279972399479597 >500 8.370815744333513E-4 0.1366011069062097 >1k 5.580543829555675E-4 0.21793044740224934 >5k 2.7902719147778377E-4 0.3951962245564789 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6385 0.3909249093556259 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2280 0.13959417280044278 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03153113990887194 0.0 2 0.0 0.0 0.0 0.11100185758210647 0.0 3 0.0 0.0 0.0 0.16506398678508497 0.0 4 0.0 0.0 0.0 0.2772291291405285 0.0 5 0.0 0.0 0.0 0.4398440953501671 0.0 6 0.0 0.0 0.0 0.7396042137848021 0.0 7 0.0 0.0 0.0 0.8879536351424656 0.0 8 0.0 0.0 0.0 1.320205766708749 0.0 9 0.0 0.0 0.0 1.5316786933985427 0.0 10 0.0 0.0 0.0 1.8813988315722834 0.0 11 0.0 0.0 0.0 2.1595463434286044 0.0 12 0.0 0.0 0.0 2.3881624141465223 0.0 13 0.0 0.0 0.0 2.508531775429711 0.0 14 0.0 0.0 0.0 2.5707368980460488 0.0 15 0.0 0.0 0.0 2.6257174099648197 0.0 16 0.0 0.0 0.0 2.732433481539895 0.0 17 0.0 0.0 0.0 2.844659849409725 0.0 18 0.0 0.0 0.0 2.999376724263549 0.0 19 0.0 0.0 0.0 3.0741943028434355 0.0 20 0.0 0.0 0.0 3.155746688005799 0.0 21 0.0 0.0 0.0 3.258789228717705 0.0 22 0.0 0.0 0.0 3.369607409756653 0.0 23 0.0 0.0 0.0 3.4986095685682903 0.0 24 0.0 0.0 0.0 3.597305097758779 0.0 25 0.0 0.0 0.0 3.6776329726334196 0.0 26 0.0 0.0 0.0 3.7654303602631716 0.0 27 0.0 0.0 0.0 3.857513533899955 0.0 28 0.0 0.0 0.0 3.9410863610370623 0.0 29 0.0 0.0 0.0 4.032924632616301 0.0 30 0.0 0.0 0.0 4.16970243175498 0.0 31 0.0 0.0 0.0 4.278561396333571 0.0 32 0.0 0.0 0.0 4.379767171613892 0.0 33 0.0 0.0 0.0 4.480666819322282 0.0 34 0.0 0.0 0.0 4.596199364968965 0.0 35 0.0 0.0 0.0 4.735364959168704 0.0 36 0.0 0.0 0.0 4.8504077007002975 0.0 37 0.0 0.0 0.0 4.9690015220662875 0.0 38 6.122551438615911E-5 0.0 0.0 5.100146573881441 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 65 0.0 44.000004 31 ATCGCTA 20 7.8574556E-4 44.000004 14 TCGAATA 20 7.8574556E-4 44.000004 39 TGCGTAA 20 7.8574556E-4 44.000004 30 ATTCGAC 25 4.443666E-5 44.0 18 CGTAACA 25 4.443666E-5 44.0 33 GTTACGG 180 0.0 41.555557 2 CGTTTTT 5330 0.0 39.831142 1 ATTACCG 50 1.3478711E-9 39.600002 1 TAACGGG 445 0.0 38.5618 3 TCGATTG 75 0.0 38.13333 1 GCATATC 480 0.0 37.125004 28 GGGCGAT 3400 0.0 36.947056 7 TAGGGCG 650 0.0 36.892307 5 ACGTCCA 30 1.3013349E-4 36.666668 17 GTACGGA 30 1.3013349E-4 36.666668 3 ATAGGGC 885 0.0 36.54237 4 AGGGACC 1575 0.0 36.31746 6 GCGATAA 195 0.0 36.102566 9 AGGGCGA 1775 0.0 35.94366 6 >>END_MODULE