##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546609_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 957652 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.004522519662675 31.0 31.0 33.0 30.0 34.0 2 31.373291132895876 31.0 31.0 34.0 30.0 34.0 3 31.518385593096447 31.0 31.0 34.0 30.0 34.0 4 35.290393587649795 37.0 35.0 37.0 33.0 37.0 5 35.08008128213589 37.0 35.0 37.0 32.0 37.0 6 35.152036439124025 37.0 35.0 37.0 32.0 37.0 7 35.654169781924956 37.0 35.0 37.0 35.0 37.0 8 35.703609453120755 37.0 35.0 37.0 35.0 37.0 9 37.47707622393103 39.0 37.0 39.0 35.0 39.0 10 36.77456215827879 39.0 37.0 39.0 32.0 39.0 11 36.31990013073643 38.0 35.0 39.0 32.0 39.0 12 35.29414442824742 37.0 35.0 39.0 30.0 39.0 13 34.855356643122974 37.0 33.0 39.0 28.0 39.0 14 35.67768354266477 37.0 34.0 40.0 27.0 41.0 15 36.08989382364366 37.0 34.0 40.0 30.0 41.0 16 36.26648719994319 37.0 35.0 40.0 31.0 41.0 17 36.21101506601563 37.0 34.0 40.0 31.0 41.0 18 36.188855659467116 37.0 35.0 40.0 31.0 41.0 19 36.08921299177572 37.0 35.0 40.0 31.0 41.0 20 35.90310467685548 36.0 34.0 40.0 30.0 41.0 21 35.77554790257839 36.0 34.0 40.0 30.0 41.0 22 35.67028001821121 36.0 34.0 40.0 30.0 41.0 23 35.5425968932347 36.0 34.0 40.0 30.0 41.0 24 35.477550300109016 35.0 34.0 40.0 30.0 41.0 25 35.361480997272494 35.0 34.0 40.0 29.0 41.0 26 35.215304724471935 35.0 34.0 40.0 29.0 41.0 27 35.038302013675114 35.0 34.0 40.0 29.0 41.0 28 35.05314143342258 36.0 34.0 40.0 29.0 41.0 29 35.02427499759829 36.0 34.0 40.0 29.0 41.0 30 34.96492567237368 36.0 34.0 40.0 29.0 41.0 31 34.791227919954224 35.0 34.0 40.0 27.0 41.0 32 34.53278435172693 35.0 33.0 40.0 26.0 41.0 33 34.30350168954902 35.0 33.0 40.0 25.0 41.0 34 34.17669779836517 35.0 33.0 40.0 24.0 41.0 35 33.95073784631578 35.0 33.0 40.0 23.0 41.0 36 33.61470450643866 35.0 33.0 39.0 23.0 41.0 37 33.61442152264079 35.0 33.0 40.0 23.0 41.0 38 33.58329330487484 35.0 33.0 40.0 23.0 41.0 39 33.523680836044825 35.0 33.0 40.0 23.0 41.0 40 33.400804258749524 35.0 32.0 40.0 22.0 41.0 41 33.44768872199922 35.0 33.0 40.0 22.0 41.0 42 33.19913183494631 35.0 32.0 39.0 21.0 41.0 43 33.24806819178574 35.0 32.0 39.0 21.0 41.0 44 33.0784397672641 35.0 32.0 39.0 20.0 41.0 45 32.939105228203985 35.0 32.0 39.0 20.0 41.0 46 32.98599491255696 35.0 32.0 39.0 20.0 41.0 47 32.870649254635296 35.0 32.0 39.0 20.0 41.0 48 32.92364032028336 35.0 32.0 39.0 20.0 41.0 49 32.86001282302966 35.0 32.0 39.0 20.0 41.0 50 32.313112696470114 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 5.0 14 9.0 15 31.0 16 88.0 17 276.0 18 674.0 19 1389.0 20 2288.0 21 3730.0 22 5683.0 23 7995.0 24 11417.0 25 15343.0 26 19115.0 27 22354.0 28 24899.0 29 28435.0 30 33692.0 31 40535.0 32 49578.0 33 63055.0 34 103052.0 35 143774.0 36 67188.0 37 76516.0 38 100700.0 39 135830.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.10028277495374 25.404217816075153 29.32892115298668 13.16657825598443 2 28.96647216316574 27.38280711573724 30.630020090805427 13.020700630291588 3 26.66991767364345 27.10170291504638 32.21180554105249 14.016573870257673 4 23.91213092020901 30.21337604891965 31.76038895131008 14.11410407956126 5 22.349559130038887 34.85065556172806 30.08963590114154 12.710149407091512 6 21.135026084631996 41.62200882992987 27.043226558290485 10.199738527147648 7 86.73046158729893 5.356121012643424 6.556661501255154 1.3567558988024877 8 87.48501543358131 4.373927063275595 5.696119258352721 2.444938244790383 9 82.91091127048239 6.339568026798879 8.128422433201205 2.6210982695175282 10 50.396281739086845 27.26731631114434 12.403044112057406 9.933357837711403 11 45.39968589842657 21.045327530251072 21.8517791431543 11.70320742816806 12 42.161348798937404 22.542322263202085 22.381303437992088 12.91502549986843 13 21.068613650887798 43.398019322259024 23.443589111702373 12.089777915150806 14 14.682786649012375 45.36073646794451 26.15052231917231 13.8059545638708 15 12.924423485775627 24.941732487375372 48.483791606972055 13.650052419876948 16 13.66477593113156 19.98304185654079 48.69211362791494 17.66006858441271 17 14.655323645750231 21.217623938549703 29.699619485992823 34.427432929707244 18 18.78365001065105 24.200753509625624 37.22020107512959 19.795395404593734 19 27.175842581647615 25.23870884204283 26.736643373584556 20.848805202725 20 28.97284190916951 23.972173607949443 27.301357904541522 19.75362657833952 21 19.944301270190007 31.601980677740976 29.408699611132228 19.045018440936794 22 21.42364867404861 27.310651468383085 24.65373643035257 26.61196342721573 23 17.505106239009578 32.92145789911158 24.356968919816385 25.21646694206246 24 16.847873757899528 25.246540496965498 41.818740001587216 16.086845743547762 25 14.67401519549899 27.180750418732487 37.87273456328604 20.272499822482487 26 15.169393474873964 36.4391240241758 28.242931670377132 20.148550830573107 27 15.761362164961804 38.895131007923545 27.189626294311502 18.15388053280315 28 14.377978639422254 32.72430903919169 36.977837460789516 15.919874860596542 29 14.248704122165462 25.88539469452369 37.15692130335446 22.70897987995639 30 17.02831508731773 35.2419250416644 30.563607657061233 17.166152213956636 31 27.40275173027363 29.841737917322785 25.133869088144756 17.621641264258834 32 29.991688003575412 26.45345073158099 27.69429813752804 15.86056312731556 33 29.62297368981634 28.485295284717203 23.933224177467388 17.958506847999065 34 18.961480788428364 27.95232506171344 27.867743188548662 25.218450961309536 35 20.051333887466427 26.210878273109646 31.40712910326507 22.330658736158856 36 30.91571886238425 24.37503393717133 26.976918546611923 17.7323286538325 37 19.926236252835057 34.1751492191318 29.004795061253986 16.893819466779163 38 19.517632710003216 34.278422642045335 25.69284040549176 20.511104242459684 39 19.889479685731352 34.17859514729776 27.825347829900632 18.106577337070252 40 24.8592390555233 25.590611203234577 26.568001737583174 22.98214800365895 41 17.817850325588 23.92340850329765 28.90736927401603 29.35137189709832 42 19.799885553416065 25.223672064591312 27.030382644217315 27.946059737775307 43 20.127039885052188 25.509788524432675 28.660202244656723 25.702969345858413 44 18.095926286375427 30.148947634422523 29.86606825861586 21.88905782058618 45 16.09874985903021 38.974387355740916 23.654103996023608 21.272758789205266 46 21.113097450848535 34.49854435640504 25.593743865203646 18.79461432754278 47 20.525514487517384 28.828217348264296 26.805039826575833 23.841228337642484 48 21.137845480404156 26.090166365234968 32.56819805106657 20.20379010329431 49 21.85762677882989 24.657077936452907 33.320245767773685 20.165049516943526 50 20.235638833313143 33.885377986993184 26.97430799497103 18.904675184722635 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1633.0 1 1733.0 2 1833.0 3 4107.5 4 6382.0 5 5076.0 6 3770.0 7 4250.5 8 4731.0 9 5489.0 10 6247.0 11 6553.5 12 6860.0 13 7158.5 14 7457.0 15 7214.0 16 6971.0 17 6952.5 18 6934.0 19 6760.5 20 6587.0 21 6305.0 22 6023.0 23 6396.0 24 6769.0 25 7602.5 26 8436.0 27 9578.5 28 10721.0 29 12954.0 30 15187.0 31 16492.5 32 17798.0 33 20764.0 34 23730.0 35 26251.0 36 28772.0 37 30571.5 38 32371.0 39 42706.0 40 53041.0 41 72230.0 42 91419.0 43 100354.5 44 109290.0 45 106193.5 46 103097.0 47 99158.0 48 95219.0 49 86656.0 50 78093.0 51 67019.0 52 55945.0 53 48035.0 54 40125.0 55 33286.5 56 26448.0 57 25075.0 58 23702.0 59 21768.0 60 19834.0 61 17735.5 62 15637.0 63 13718.5 64 11800.0 65 10304.5 66 8809.0 67 7170.5 68 5532.0 69 4689.5 70 3847.0 71 3071.5 72 2296.0 73 2119.0 74 1942.0 75 1497.5 76 1053.0 77 890.0 78 727.0 79 528.0 80 329.0 81 233.0 82 137.0 83 103.0 84 69.0 85 52.5 86 36.0 87 22.0 88 8.0 89 5.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 957652.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.779767897838713 #Duplication Level Percentage of deduplicated Percentage of total 1 81.83188912597642 20.277752191833677 2 6.272980093940335 3.10885981511208 3 2.2922330812379843 1.704030111624748 4 1.2887508732590935 1.277397900699892 5 0.8250342625949314 1.022207876743346 6 0.6438684439119898 0.9572946358129015 7 0.4866727012277947 0.8441745605047272 8 0.39268368585605995 0.7784488474224782 9 0.3279637765421551 0.7314179635451921 >10 3.7798284463926466 21.808409864653115 >50 1.1788739384833458 20.515774421312035 >100 0.6758254627243397 25.9371295335708 >500 0.0021225674080538304 0.31274014301771536 >1k 0.0012735404448322985 0.7243621341473219 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3312 0.3458458813848872 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2321 0.24236361434007342 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1253 0.13084084824132358 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07831654922665018 0.0 2 0.0 0.0 0.0 0.2827749537410249 0.0 3 0.0 0.0 0.0 0.3928358109208773 0.0 4 0.0 0.0 0.0 0.6415691712647182 0.0 5 0.0 0.0 0.0 0.962667023093984 0.0 6 0.0 0.0 0.0 1.5656000300735549 0.0 7 0.0 0.0 0.0 1.8361576021352224 0.0 8 0.0 0.0 0.0 2.644279968088617 0.0 9 0.0 0.0 0.0 3.028448747561745 0.0 10 0.0 0.0 0.0 3.6376470784794477 0.0 11 0.0 0.0 0.0 4.089168090287495 0.0 12 0.0 0.0 0.0 4.469577675397744 0.0 13 0.0 0.0 0.0 4.6677707559739865 0.0 14 0.0 0.0 0.0 4.758095842748723 0.0 15 0.0 0.0 0.0 4.837456612631728 0.0 16 0.0 0.0 0.0 5.007560157552013 0.0 17 0.0 0.0 0.0 5.177141592144119 0.0 18 0.0 0.0 0.0 5.449683183452862 0.0 19 0.0 0.0 0.0 5.559326352370172 0.0 20 0.0 0.0 0.0 5.6793073057854 0.0 21 0.0 0.0 0.0 5.839386332404673 0.0 22 0.0 0.0 0.0 6.010011987653135 0.0 23 0.0 0.0 0.0 6.195883264484385 0.0 24 0.0 0.0 0.0 6.3395680267988785 0.0 25 0.0 0.0 0.0 6.454119032801059 0.0 26 0.0 0.0 0.0 6.57075848011595 0.0 27 0.0 0.0 0.0 6.690530589399907 0.0 28 0.0 0.0 0.0 6.805186017467723 0.0 29 0.0 0.0 0.0 6.936444553971588 0.0 30 0.0 0.0 0.0 7.128894420937877 0.0 31 0.0 0.0 0.0 7.273832248039998 0.0 32 0.0 0.0 0.0 7.407388069987845 0.0 33 0.0 0.0 0.0 7.526429224812354 0.0 34 0.0 0.0 0.0 7.666354792763968 0.0 35 0.0 0.0 0.0 7.845229791197638 0.0 36 0.0 0.0 0.0 7.993613546465731 0.0 37 0.0 0.0 0.0 8.141057503143104 0.0 38 0.0 0.0 0.0 8.291320855592637 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 60 0.0 44.000004 1 ACGCCGA 20 7.855822E-4 44.000004 12 ACGTTAG 20 7.855822E-4 44.000004 1 CGTTCGA 30 2.527273E-6 44.000004 14 TATGACG 40 8.309144E-9 44.000004 1 TAACCGA 20 7.855822E-4 44.000004 37 TACGAGT 20 7.855822E-4 44.000004 13 CGTAGAT 30 2.527273E-6 44.000004 26 TTGCGAC 20 7.855822E-4 44.000004 22 CGGTAAG 20 7.855822E-4 44.000004 2 TCGACAC 30 2.527273E-6 44.000004 34 GTTGCCG 20 7.855822E-4 44.000004 22 TATCCGA 30 2.527273E-6 44.000004 32 GAATCTA 55 1.8189894E-12 44.0 19 TCGATAC 25 4.4422814E-5 44.0 31 ATACTCG 35 1.445751E-7 44.0 44 GCCGATC 35 1.445751E-7 44.0 9 CTCGCGG 25 4.4422814E-5 44.0 1 CCGACAT 25 4.4422814E-5 44.0 36 CGGTCTA 50 2.7284841E-11 44.0 31 >>END_MODULE